Wall clock time and date at job start Sun Mar 29 2020 22:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99405 * 2 1 4 4 H 1.48490 * 109.47640 * 270.00179 * 3 2 1 5 5 H 1.48504 * 109.47220 * 30.00465 * 3 2 1 6 6 H 1.48508 * 109.46829 * 150.00027 * 3 2 1 7 7 C 1.37877 * 120.00555 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99871 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99557 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46998 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47378 * 179.97438 * 10 9 7 12 12 N 1.30977 * 126.43995 * 90.02539 * 11 10 9 13 13 C 1.35209 * 105.58046 * 180.02562 * 12 11 10 14 14 C 1.48429 * 126.41504 * 179.97438 * 13 12 11 15 15 C 1.39759 * 120.53388 * 179.97438 * 14 13 12 16 16 C 1.38416 * 118.30988 * 179.97438 * 15 14 13 17 17 C 1.38314 * 119.28145 * 0.02562 * 16 15 14 18 18 N 1.31887 * 121.02665 * 0.02562 * 17 16 15 19 19 C 1.31746 * 121.84814 * 359.67959 * 18 17 16 20 20 N 1.30758 * 107.17541 * 359.97438 * 13 12 11 21 21 O 1.21293 * 110.09786 * 0.02562 * 20 13 12 22 22 H 0.96994 * 120.00702 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47360 * 60.00037 * 9 7 2 24 24 H 1.08993 * 109.47490 * 299.99482 * 9 7 2 25 25 H 1.08996 * 109.47078 * 59.99470 * 10 9 7 26 26 H 1.09006 * 109.46848 * 300.00087 * 10 9 7 27 27 H 1.08005 * 120.84592 * 359.95707 * 15 14 13 28 28 H 1.08002 * 120.35840 * 180.02562 * 16 15 14 29 29 H 1.08000 * 119.48392 * 179.97438 * 17 16 15 30 30 H 1.08000 * 119.70188 * 180.31198 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0467 -1.3999 5 1 1.4463 2.6527 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0027 11 6 1.4921 -4.9671 -0.0033 12 7 1.1032 -5.6405 -1.0572 13 6 0.4711 -6.7346 -0.5762 14 6 -0.1538 -7.8154 -1.3791 15 6 -0.7778 -8.8966 -0.7507 16 6 -1.3461 -9.8782 -1.5440 17 6 -1.2783 -9.7590 -2.9203 18 7 -0.6816 -8.7272 -3.4848 19 6 -0.1318 -7.7660 -2.7708 20 7 0.5132 -6.6625 0.7287 21 8 1.0950 -5.6550 1.0718 22 1 -0.4851 0.8399 0.0004 23 1 0.6248 -2.5563 -0.8920 24 1 0.6242 -2.5575 0.8880 25 1 2.8722 -3.6049 0.8872 26 1 2.8721 -3.6034 -0.8927 27 1 -0.8155 -8.9646 0.3266 28 1 -1.8371 -10.7280 -1.0932 29 1 -1.7202 -10.5233 -3.5425 30 1 0.3435 -6.9342 -3.2693 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236181081.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:38 Heat of formation + Delta-G solvation = 69.979091 kcal Electronic energy + Delta-G solvation = -16147.818100 eV Core-core repulsion = 13331.225225 eV Total energy + Delta-G solvation = -2816.592874 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.61426 -41.15586 -37.20166 -36.32044 -34.65391 -33.49737 -32.44240 -31.60514 -27.77986 -26.21445 -25.15812 -24.07691 -23.51839 -21.97737 -19.27692 -18.95204 -18.42629 -17.98029 -17.14102 -16.85649 -16.49350 -15.67806 -15.15730 -15.13071 -14.78123 -14.32917 -14.20622 -13.71494 -13.46356 -13.15430 -13.01829 -12.82046 -12.60210 -12.24335 -12.01748 -11.94493 -11.36509 -11.22876 -10.80515 -10.65632 -10.56272 -9.99761 -8.19961 -6.31981 -0.57392 0.11791 0.23818 1.32175 1.47136 1.47816 1.58852 1.76438 2.34424 2.45352 2.73677 2.82706 3.15839 3.43851 3.72680 3.82808 3.85777 4.10628 4.31770 4.47259 4.50891 4.53167 4.69082 4.81742 4.92856 4.99370 5.07360 5.43934 5.52960 5.55328 5.78012 6.13288 6.80598 6.83997 6.99368 7.38450 8.92499 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.045355 B = 0.004110 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.204644 B = 6811.112940 C = 7085.976052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.255 1.255 7 C -0.538 4.538 8 H 0.080 0.920 9 C 0.032 3.968 10 C -0.014 4.014 11 C 0.218 3.782 12 N -0.504 5.504 13 C 0.206 3.794 14 C -0.093 4.093 15 C -0.048 4.048 16 C -0.157 4.157 17 C 0.113 3.887 18 N -0.504 5.504 19 C 0.134 3.866 20 N -0.395 5.395 21 O 0.069 5.931 22 H 0.263 0.737 23 H -0.007 1.007 24 H -0.001 1.001 25 H 0.120 0.880 26 H 0.117 0.883 27 H 0.148 0.852 28 H 0.185 0.815 29 H 0.201 0.799 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.042 -18.446 -1.829 18.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.179 1.179 7 C -0.576 4.576 8 H 0.098 0.902 9 C -0.006 4.006 10 C -0.053 4.053 11 C -0.001 4.001 12 N -0.237 5.237 13 C -0.064 4.064 14 C -0.097 4.097 15 C -0.075 4.075 16 C -0.176 4.176 17 C -0.044 4.044 18 N -0.212 5.212 19 C -0.024 4.024 20 N -0.106 5.106 21 O 0.013 5.987 22 H 0.072 0.928 23 H 0.012 0.988 24 H 0.017 0.983 25 H 0.138 0.862 26 H 0.135 0.865 27 H 0.166 0.834 28 H 0.203 0.797 29 H 0.217 0.783 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.433 -18.950 -2.616 19.135 hybrid contribution 0.067 1.321 1.041 1.683 sum -0.366 -17.629 -1.575 17.703 Atomic orbital electron populations 1.70111 1.08110 1.27939 1.51426 1.25997 0.95646 1.03608 0.94555 0.85375 0.78809 0.78051 0.78380 1.20029 1.21385 1.17905 1.21570 0.94227 0.90910 1.50859 0.90215 1.18966 0.94021 0.91930 0.95692 1.20586 0.96725 0.81331 1.06675 1.29536 0.93984 0.97054 0.79554 1.72019 1.16944 1.05463 1.29299 1.24123 0.99167 0.95263 0.87880 1.18540 1.03566 0.93699 0.93856 1.21890 0.92391 0.91266 1.01975 1.22532 1.00185 1.00313 0.94585 1.23728 0.92193 0.94557 0.93901 1.67858 1.09873 1.02702 1.40793 1.22868 0.93822 0.96576 0.89147 1.74753 1.16570 1.04301 1.14982 1.85243 1.52340 1.24994 1.36169 0.92790 0.98821 0.98295 0.86228 0.86526 0.83390 0.79744 0.78258 0.82465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.78 13.29 21.45 0.28 -55.49 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.97 42.27 29.54 68.60 2.03 44.30 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 7 C -0.54 -28.27 9.11 25.60 0.23 -28.04 16 8 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 9 C 0.03 1.60 4.96 29.85 0.15 1.75 16 10 C -0.01 -0.53 5.78 29.85 0.17 -0.36 16 11 C 0.22 8.18 7.75 88.36 0.68 8.86 16 12 N -0.50 -19.29 11.28 -302.51 -3.41 -22.70 16 13 C 0.21 7.29 7.82 137.30 1.07 8.36 16 14 C -0.09 -2.69 5.89 -19.94 -0.12 -2.81 16 15 C -0.05 -1.05 9.83 22.68 0.22 -0.82 16 16 C -0.16 -2.32 10.10 22.33 0.23 -2.09 16 17 C 0.11 1.87 11.17 84.70 0.95 2.82 16 18 N -0.50 -12.41 10.35 -194.97 -2.02 -14.42 16 19 C 0.13 3.80 10.87 84.96 0.92 4.72 16 20 N -0.40 -14.21 11.93 -59.14 -0.71 -14.91 16 21 O 0.07 2.54 11.29 74.59 0.84 3.38 16 22 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 23 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 24 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 25 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 26 H 0.12 3.97 8.14 -2.38 -0.02 3.96 16 27 H 0.15 3.00 7.95 -2.91 -0.02 2.97 16 28 H 0.19 1.13 8.06 -2.91 -0.02 1.11 16 29 H 0.20 1.60 8.06 -2.91 -0.02 1.57 16 30 H 0.16 4.64 7.89 -2.91 -0.02 4.61 16 Total: -1.00 -67.27 278.31 3.15 -64.12 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: 1.16 Total: 2.88 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 4.97 Total: -7.16 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -5.85 Total: -107.53 kcal Atomic # 8 Polarization: 2.54 SS G_CDS: 0.84 Total: 3.38 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -67.27 3.15 -64.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236181081.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.103 kcal (2) G-P(sol) polarization free energy of solvation -67.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds