Wall clock time and date at job start Sun Mar 29 2020 23:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36023 * 126.34360 * 2 1 4 4 N 1.30114 * 110.12727 * 179.71433 * 3 2 1 5 5 C 1.35800 * 109.62810 * 0.41667 * 4 3 2 6 6 C 1.39652 * 133.56873 * 179.88829 * 5 4 3 7 7 C 1.38468 * 119.55513 * 179.68276 * 6 5 4 8 8 N 1.39584 * 119.82963 * 179.97438 * 7 6 5 9 9 C 1.34781 * 120.00160 * 33.61127 * 8 7 6 10 10 O 1.21759 * 120.00063 * 5.27552 * 9 8 7 11 11 C 1.41822 * 119.99767 * 185.27521 * 9 8 7 12 12 H 1.07998 * 120.00333 * 0.02562 * 11 9 8 13 13 C 1.40136 * 120.00071 * 179.97438 * 11 9 8 14 14 N 1.30630 * 119.99600 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 120.00284 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47503 * 59.99839 * 15 13 11 17 17 H 1.48502 * 109.47176 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46891 * 299.99764 * 15 13 11 19 19 C 1.39530 * 120.33512 * 359.97224 * 7 6 5 20 20 C 1.36658 * 120.52395 * 0.02591 * 19 7 6 21 21 C 1.38133 * 126.33877 * 179.97438 * 2 1 3 22 22 H 1.09005 * 109.47026 * 270.04094 * 1 2 3 23 23 H 1.08997 * 109.47536 * 30.04026 * 1 2 3 24 24 H 1.09003 * 109.47139 * 150.03865 * 1 2 3 25 25 H 1.08008 * 124.93981 * 359.96446 * 3 2 1 26 26 H 1.07999 * 120.22485 * 359.65553 * 6 5 4 27 27 H 0.97007 * 119.99979 * 213.61033 * 8 7 6 28 28 H 0.97002 * 120.00078 * 179.97438 * 14 13 11 29 29 H 1.07997 * 119.74130 * 180.02562 * 19 7 6 30 30 H 1.07998 * 119.97235 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2711 1.0956 0.0000 4 7 3.5204 0.7323 0.0061 5 6 3.6013 -0.6233 0.0011 6 6 4.6686 -1.5239 0.0020 7 6 4.4139 -2.8849 0.0023 8 7 5.4764 -3.7902 0.0026 9 6 6.6198 -3.4871 0.6487 10 8 6.6928 -2.4685 1.3117 11 6 7.7378 -4.3548 0.5564 12 1 7.6732 -5.2581 -0.0320 13 6 8.9268 -4.0395 1.2277 14 7 9.0051 -2.9467 1.9390 15 14 10.3996 -5.1820 1.1056 16 1 10.8124 -5.3073 -0.3153 17 1 11.5240 -4.6269 1.9011 18 1 10.0330 -6.5203 1.6344 19 6 3.1006 -3.3561 0.0023 20 6 2.0497 -2.4824 0.0015 21 6 2.2835 -1.1127 0.0005 22 1 -0.3633 0.0007 1.0277 23 1 -0.3634 0.8896 -0.5144 24 1 -0.3633 -0.8903 -0.5132 25 1 1.9245 2.1186 -0.0005 26 1 5.6859 -1.1612 0.0020 27 1 5.3919 -4.6374 -0.4623 28 1 9.8279 -2.7285 2.4041 29 1 2.9129 -4.4196 0.0030 30 1 1.0367 -2.8568 0.0011 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258762607.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:38:22 Heat of formation + Delta-G solvation = 16.333163 kcal Electronic energy + Delta-G solvation = -16742.674860 eV Core-core repulsion = 13923.755724 eV Total energy + Delta-G solvation = -2818.919136 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.93226 -40.28718 -37.82845 -35.07500 -34.98135 -34.26622 -30.94069 -30.06459 -28.46504 -27.36377 -24.44077 -23.21300 -21.71671 -21.50102 -19.50796 -18.31773 -17.96519 -17.49030 -16.89192 -16.60525 -15.93366 -15.41622 -15.16733 -14.83690 -14.50777 -14.13011 -13.97229 -13.76960 -13.29439 -13.12756 -12.87444 -12.71537 -12.64316 -12.41121 -12.06068 -11.31217 -10.97004 -10.88141 -10.39614 -9.84449 -9.12503 -8.43398 -8.36211 -7.00299 0.12326 0.60222 1.39567 1.43416 1.56064 1.85299 1.95605 2.22262 2.39646 2.92508 3.02482 3.53472 3.69317 3.76182 4.01718 4.18980 4.51322 4.52134 4.53753 4.58982 4.79694 4.88540 5.11119 5.22499 5.42613 5.55333 5.60870 5.79578 5.89948 6.22088 6.38002 6.45960 6.74696 7.03092 7.45842 8.42174 8.60186 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.054095 B = 0.005173 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.481397 B = 5411.244325 C = 5822.633109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.493 5.493 3 C 0.267 3.733 4 N -0.563 5.563 5 C 0.034 3.966 6 C -0.127 4.127 7 C 0.154 3.846 8 N -0.693 5.693 9 C 0.526 3.474 10 O -0.618 6.618 11 C -0.566 4.566 12 H 0.095 0.905 13 C 0.028 3.972 14 N -0.807 5.807 15 Si 1.006 2.994 16 H -0.253 1.253 17 H -0.274 1.274 18 H -0.249 1.249 19 C -0.134 4.134 20 C -0.076 4.076 21 C 0.009 3.991 22 H 0.084 0.916 23 H 0.117 0.883 24 H 0.094 0.906 25 H 0.262 0.738 26 H 0.083 0.917 27 H 0.409 0.591 28 H 0.278 0.722 29 H 0.163 0.837 30 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.203 0.358 -5.461 19.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.184 5.184 3 C -0.018 4.018 4 N -0.284 5.284 5 C -0.083 4.083 6 C -0.151 4.151 7 C 0.054 3.946 8 N -0.339 5.339 9 C 0.335 3.665 10 O -0.505 6.505 11 C -0.601 4.601 12 H 0.113 0.887 13 C -0.189 4.189 14 N -0.435 5.435 15 Si 0.824 3.176 16 H -0.177 1.177 17 H -0.199 1.199 18 H -0.173 1.173 19 C -0.155 4.155 20 C -0.097 4.097 21 C -0.100 4.100 22 H 0.102 0.898 23 H 0.136 0.864 24 H 0.113 0.887 25 H 0.277 0.723 26 H 0.101 0.899 27 H 0.245 0.755 28 H 0.088 0.912 29 H 0.180 0.820 30 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -17.452 1.671 -4.875 18.197 hybrid contribution 0.538 -0.845 0.003 1.002 sum -16.914 0.826 -4.872 17.621 Atomic orbital electron populations 1.22336 0.72859 1.06606 1.04706 1.45487 1.08735 1.03925 1.60223 1.26218 0.84063 0.95201 0.96317 1.70339 1.21552 1.11506 1.25007 1.18977 0.93061 0.90601 1.05705 1.20068 0.96817 0.92167 1.06086 1.17838 0.89237 0.88728 0.98766 1.43637 1.13859 1.20362 1.56013 1.17521 0.82790 0.86880 0.79263 1.90641 1.83340 1.30577 1.45911 1.20597 0.96905 1.09714 1.32882 0.88727 1.27123 1.03371 0.96559 0.91867 1.70201 1.27877 1.23509 1.21898 0.84959 0.74834 0.78056 0.79765 1.17664 1.19886 1.17301 1.20773 0.88954 1.01379 1.04403 1.19787 1.00512 0.87437 1.01920 1.19029 0.90182 0.90945 1.09870 0.89763 0.86436 0.88685 0.72291 0.89911 0.75549 0.91196 0.81992 0.81366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 11.18 127.77 1.43 2.19 16 2 N -0.49 -11.83 3.21 -543.40 -1.74 -13.58 16 3 C 0.27 7.16 12.50 180.06 2.25 9.41 16 4 N -0.56 -23.33 11.28 -192.04 -2.17 -25.49 16 5 C 0.03 1.55 7.23 39.44 0.29 1.83 16 6 C -0.13 -6.71 8.70 22.67 0.20 -6.51 16 7 C 0.15 7.07 6.27 38.27 0.24 7.31 16 8 N -0.69 -33.66 5.31 -311.40 -1.65 -35.31 16 9 C 0.53 32.00 7.30 85.13 0.62 32.62 16 10 O -0.62 -43.64 12.56 -4.54 -0.06 -43.70 16 11 C -0.57 -32.49 9.32 23.62 0.22 -32.27 16 12 H 0.09 4.74 7.85 -2.91 -0.02 4.72 16 13 C 0.03 1.60 5.50 85.33 0.47 2.07 16 14 N -0.81 -50.48 11.73 21.85 0.26 -50.23 16 15 Si 1.01 40.89 29.56 68.60 2.03 42.92 16 16 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 17 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 18 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 19 C -0.13 -4.47 9.89 22.21 0.22 -4.25 16 20 C -0.08 -2.16 9.98 22.07 0.22 -1.94 16 21 C 0.01 0.30 6.88 38.89 0.27 0.56 16 22 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 23 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 24 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.26 3.56 8.06 -2.91 -0.02 3.53 16 26 H 0.08 5.26 6.41 -2.91 -0.02 5.24 16 27 H 0.41 16.20 8.77 -92.70 -0.81 15.39 16 28 H 0.28 15.72 8.29 -92.71 -0.77 14.95 16 29 H 0.16 4.12 8.06 -2.91 -0.02 4.10 16 30 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -92.81 269.62 3.45 -89.36 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.37 Total: 24.99 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 6.42 Total: 11.04 kcal Atomic # 7 Polarization: -119.30 SS G_CDS: -5.31 Total: -124.61 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -0.06 Total: -43.70 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -92.81 3.45 -89.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258762607.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.693 kcal (2) G-P(sol) polarization free energy of solvation -92.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds