Wall clock time and date at job start Sun Mar 29 2020 22:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 119.99984 * 2 1 4 4 C 1.52997 * 109.47299 * 125.00058 * 3 2 1 5 5 S 1.81397 * 109.47184 * 179.97438 * 4 3 2 6 6 O 1.42106 * 110.54288 * 68.37368 * 5 4 3 7 7 O 1.42097 * 110.54604 * 291.62268 * 5 4 3 8 8 N 1.65597 * 104.45101 * 179.97438 * 5 4 3 9 9 C 1.36946 * 119.99842 * 270.00330 * 8 5 4 10 10 H 1.08001 * 119.99520 * 307.65289 * 9 8 5 11 11 C 1.38809 * 119.99991 * 127.66131 * 9 8 5 12 12 N 1.31618 * 120.00251 * 345.44004 * 11 9 8 13 13 Si 1.86800 * 119.99853 * 165.44845 * 11 9 8 14 14 H 1.48503 * 109.47236 * 59.99891 * 13 11 9 15 15 H 1.48503 * 109.46986 * 179.97438 * 13 11 9 16 16 H 1.48492 * 109.47382 * 299.99650 * 13 11 9 17 17 C 1.46498 * 120.00292 * 89.99797 * 8 5 4 18 18 C 1.53005 * 117.50163 * 181.79144 * 17 8 5 19 19 C 1.53001 * 117.49661 * 113.13062 * 17 8 5 20 20 H 1.07999 * 119.99786 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.00027 * 180.02562 * 1 2 3 22 22 H 1.07997 * 120.00190 * 179.97438 * 2 1 3 23 23 H 1.08998 * 109.47143 * 4.99874 * 3 2 1 24 24 H 1.09006 * 109.46867 * 245.00040 * 3 2 1 25 25 H 1.08998 * 109.47173 * 59.99835 * 4 3 2 26 26 H 1.09006 * 109.47147 * 299.99811 * 4 3 2 27 27 H 0.96992 * 120.00116 * 177.80210 * 12 11 9 28 28 H 1.09002 * 115.54980 * 327.46487 * 17 8 5 29 29 H 1.09002 * 117.49466 * 0.02562 * 18 17 8 30 30 H 1.08999 * 117.49962 * 145.01969 * 18 17 8 31 31 H 1.09000 * 117.49897 * 214.97733 * 19 17 8 32 32 H 1.09000 * 117.50036 * 359.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 16 3.9425 2.9038 1.1811 6 8 3.0711 3.9833 1.4886 7 8 4.8258 2.9690 0.0700 8 7 4.9452 2.8021 2.4951 9 6 4.5182 3.2464 3.7181 10 1 4.1146 4.2430 3.8198 11 6 4.6044 2.4160 4.8271 12 7 4.8195 1.1271 4.6690 13 14 4.4151 3.1276 6.5438 14 1 3.0778 3.7605 6.6726 15 1 4.5466 2.0409 7.5473 16 1 5.4695 4.1469 6.7762 17 6 6.2888 2.2368 2.3493 18 6 7.1515 2.1317 3.6086 19 6 7.4772 3.1809 2.5426 20 1 -0.5400 0.9353 -0.0004 21 1 -0.5400 -0.9353 0.0004 22 1 1.8500 -0.9353 0.0004 23 1 1.3586 2.1316 0.0895 24 1 2.6213 1.4026 -0.9314 25 1 3.7399 0.5066 1.0920 26 1 2.4772 1.2357 2.1130 27 1 4.9115 0.5521 5.4446 28 1 6.3887 1.4482 1.6035 29 1 6.7192 2.4827 4.5456 30 1 7.8192 1.2740 3.6911 31 1 8.3590 3.0131 1.9243 32 1 7.2593 4.2227 2.7778 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268871271.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:04 Heat of formation + Delta-G solvation = -24.144547 kcal Electronic energy + Delta-G solvation = -16521.206169 eV Core-core repulsion = 13803.682988 eV Total energy + Delta-G solvation = -2717.523181 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -37.23137 -35.70815 -35.35370 -34.53713 -32.97440 -31.02652 -30.08060 -24.98670 -23.33171 -21.32159 -20.74776 -19.65264 -18.33875 -16.86635 -16.55762 -15.42436 -15.29882 -14.85953 -14.58799 -13.84442 -13.75152 -13.33886 -12.67734 -12.34924 -11.97808 -11.74607 -11.44318 -11.20085 -11.09049 -10.84263 -10.77976 -10.76203 -10.68496 -10.43460 -10.38471 -9.77742 -9.60632 -9.23969 -9.03535 -8.74272 -7.52987 -6.56565 -4.31470 1.62640 2.48023 3.10707 3.13980 3.18041 3.91193 4.24442 4.67673 4.93327 5.08401 5.22934 5.26509 5.43570 5.60032 5.69959 5.92853 5.94201 6.05401 6.09027 6.14330 6.30926 6.45251 6.58055 6.68088 6.78197 6.95086 6.95967 7.23578 7.32013 7.58722 8.32147 8.70584 9.23542 10.41129 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.022527 B = 0.009556 C = 0.008006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.629537 B = 2929.348650 C = 3496.672653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.133 4.133 3 C -0.085 4.085 4 C -0.638 4.638 5 S 2.511 3.489 6 O -0.978 6.978 7 O -1.003 7.003 8 N -0.789 5.789 9 C -0.268 4.268 10 H 0.098 0.902 11 C 0.050 3.950 12 N -0.821 5.821 13 Si 0.911 3.089 14 H -0.266 1.266 15 H -0.281 1.281 16 H -0.267 1.267 17 C 0.122 3.878 18 C -0.150 4.150 19 C -0.210 4.210 20 H 0.096 0.904 21 H 0.094 0.906 22 H 0.108 0.892 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.112 0.888 26 H 0.121 0.879 27 H 0.274 0.726 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.899 -2.876 -1.893 3.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.152 4.152 3 C -0.123 4.123 4 C -0.760 4.760 5 S 2.613 3.387 6 O -0.969 6.969 7 O -0.992 6.992 8 N -0.612 5.612 9 C -0.413 4.413 10 H 0.115 0.885 11 C -0.164 4.164 12 N -0.456 5.456 13 Si 0.736 3.264 14 H -0.191 1.191 15 H -0.206 1.206 16 H -0.192 1.192 17 C 0.013 3.987 18 C -0.189 4.189 19 C -0.251 4.251 20 H 0.114 0.886 21 H 0.113 0.887 22 H 0.126 0.874 23 H 0.091 0.909 24 H 0.094 0.906 25 H 0.130 0.870 26 H 0.139 0.861 27 H 0.084 0.916 28 H 0.120 0.880 29 H 0.127 0.873 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.081 -2.398 -2.654 3.737 hybrid contribution -0.335 -0.749 1.197 1.451 sum -1.416 -3.147 -1.457 3.746 Atomic orbital electron populations 1.23800 0.95911 1.01613 1.03216 1.22932 0.95864 0.98341 0.98017 1.20472 0.97911 0.96562 0.97393 1.30877 1.11850 1.28751 1.04513 1.11205 0.74328 0.78246 0.74887 1.93386 1.68332 1.51024 1.84112 1.93369 1.63024 1.87796 1.55044 1.52535 1.16233 1.69934 1.22476 1.19417 1.40357 0.98094 0.83442 0.88502 1.25879 0.94777 0.94668 1.01101 1.70074 1.40298 1.03164 1.32091 0.86239 0.79943 0.79068 0.81131 1.19081 1.20588 1.19177 1.20831 0.80577 0.97458 0.99824 1.23099 1.01414 0.98848 0.95530 1.23371 0.99721 0.97500 1.04467 0.88590 0.88719 0.87396 0.90945 0.90561 0.86968 0.86051 0.91565 0.88045 0.87308 0.90742 0.90206 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.84 14.32 29.02 0.42 -2.42 16 2 C -0.13 -2.03 9.52 -36.02 -0.34 -2.37 16 3 C -0.09 -1.48 5.66 -27.88 -0.16 -1.64 16 4 C -0.64 -12.66 6.16 37.16 0.23 -12.44 16 5 S 2.51 58.29 5.39 -107.50 -0.58 57.71 16 6 O -0.98 -25.36 17.10 -57.54 -0.98 -26.34 16 7 O -1.00 -24.69 17.26 -57.54 -0.99 -25.68 16 8 N -0.79 -18.86 2.94 -53.42 -0.16 -19.02 16 9 C -0.27 -6.64 8.21 -15.06 -0.12 -6.76 16 10 H 0.10 2.46 7.69 -52.49 -0.40 2.06 16 11 C 0.05 1.16 3.14 -17.43 -0.05 1.11 16 12 N -0.82 -19.38 11.64 55.49 0.65 -18.74 16 13 Si 0.91 18.39 29.44 -169.99 -5.00 13.39 16 14 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 15 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 16 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 17 C 0.12 2.68 5.41 -67.93 -0.37 2.32 16 18 C -0.15 -3.08 8.37 -26.69 -0.22 -3.30 16 19 C -0.21 -4.18 10.38 -26.69 -0.28 -4.45 16 20 H 0.10 1.26 7.84 -52.49 -0.41 0.84 16 21 H 0.09 1.09 8.06 -52.49 -0.42 0.67 16 22 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 23 H 0.07 1.23 7.79 -51.93 -0.40 0.83 16 24 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.11 2.13 8.14 -51.92 -0.42 1.70 16 26 H 0.12 2.52 8.14 -51.92 -0.42 2.09 16 27 H 0.27 6.12 8.31 -40.82 -0.34 5.78 16 28 H 0.10 2.11 8.13 -51.93 -0.42 1.69 16 29 H 0.11 2.40 5.11 -51.93 -0.27 2.13 16 30 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 LS Contribution 286.09 15.07 4.31 4.31 Total: -1.00 -28.32 286.09 -8.09 -36.40 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -4.42 Total: 7.93 kcal Atomic # 6 Polarization: -29.06 SS G_CDS: -0.90 Total: -29.96 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.49 Total: -37.75 kcal Atomic # 8 Polarization: -50.05 SS G_CDS: -1.98 Total: -52.02 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.00 Total: 13.39 kcal Atomic # 16 Polarization: 58.29 SS G_CDS: -0.58 Total: 57.71 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.32 -8.09 -36.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268871271.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.258 kcal (2) G-P(sol) polarization free energy of solvation -28.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds