Wall clock time and date at job start Sun Mar 29 2020 23:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 120.00050 * 2 1 4 4 H 1.48506 * 109.47118 * 269.99612 * 3 2 1 5 5 H 1.48495 * 109.47356 * 29.99940 * 3 2 1 6 6 H 1.48503 * 109.47061 * 150.00316 * 3 2 1 7 7 C 1.38794 * 119.99568 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99619 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00261 * 359.97438 * 7 2 1 10 10 C 1.81005 * 100.00090 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47155 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46906 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.46716 * 185.60083 * 12 11 10 14 14 C 1.47244 * 110.99901 * 183.59271 * 13 12 11 15 15 C 1.53089 * 108.47871 * 54.49442 * 14 13 12 16 16 C 1.50304 * 109.71405 * 49.01569 * 15 14 13 17 17 C 1.30140 * 122.85358 * 343.48879 * 16 15 14 18 18 F 1.35101 * 118.38073 * 180.34294 * 17 16 15 19 19 C 1.46845 * 111.00163 * 306.53418 * 13 12 11 20 20 H 0.97002 * 119.99578 * 0.02562 * 1 2 3 21 21 H 1.09008 * 109.47002 * 60.00189 * 10 9 7 22 22 H 1.08994 * 109.46973 * 299.99993 * 10 9 7 23 23 H 1.08999 * 109.46881 * 60.00020 * 11 10 9 24 24 H 1.08997 * 109.46958 * 300.00362 * 11 10 9 25 25 H 1.08996 * 109.47526 * 65.59846 * 12 11 10 26 26 H 1.08997 * 109.46999 * 305.59388 * 12 11 10 27 27 H 1.08996 * 109.63780 * 174.19555 * 14 13 12 28 28 H 1.09001 * 109.63208 * 294.79865 * 14 13 12 29 29 H 1.09002 * 109.42700 * 169.08395 * 15 14 13 30 30 H 1.08994 * 109.43514 * 288.93499 * 15 14 13 31 31 H 1.08004 * 118.57465 * 163.49509 * 16 15 14 32 32 H 1.09005 * 109.33403 * 47.82383 * 19 13 12 33 33 H 1.09002 * 109.33630 * 167.49802 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7279 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9791 -5.3243 0.0001 12 6 3.1511 -6.3078 0.0008 13 7 2.6402 -7.6784 -0.1338 14 6 3.7346 -8.6600 -0.0514 15 6 4.5066 -8.4180 1.2483 16 6 3.5441 -8.3154 2.3981 17 6 2.2692 -8.1108 2.2355 18 9 1.4870 -8.0269 3.3339 19 6 1.6244 -7.9641 0.8875 20 1 -0.4849 0.8401 -0.0004 21 1 3.1244 -3.7314 0.8895 22 1 3.1243 -3.7314 -0.8905 23 1 1.3703 -5.4846 -0.8896 24 1 1.3707 -5.4840 0.8903 25 1 3.7023 -6.2157 0.9366 26 1 3.8140 -6.0835 -0.8349 27 1 3.3224 -9.6690 -0.0501 28 1 4.4032 -8.5355 -0.9032 29 1 5.1923 -9.2472 1.4224 30 1 5.0735 -7.4908 1.1661 31 1 3.9271 -8.4157 3.4030 32 1 0.9043 -7.1464 0.9189 33 1 1.1083 -8.8901 0.6341 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271617179.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:56 Heat of formation + Delta-G solvation = -57.337759 kcal Electronic energy + Delta-G solvation = -15432.494407 eV Core-core repulsion = 12725.904649 eV Total energy + Delta-G solvation = -2706.589758 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.85243 -40.58957 -35.40320 -34.60114 -32.66134 -31.57412 -28.13995 -27.50539 -25.26789 -23.53796 -22.40471 -19.58437 -19.25935 -17.96939 -17.08744 -16.89830 -16.75497 -16.46968 -16.19137 -15.89482 -15.65064 -14.72451 -14.45748 -14.15756 -13.64072 -13.43626 -13.21455 -13.04409 -12.97172 -12.78762 -12.67213 -12.56445 -12.29164 -11.86518 -11.58856 -11.35632 -11.14180 -10.32322 -9.88627 -9.41526 -8.67243 -8.37533 -6.14106 0.84413 1.31306 1.39590 1.48784 1.73942 2.28163 2.84973 2.96842 3.22491 3.32166 3.70555 3.92648 3.99090 4.07442 4.12110 4.33578 4.42103 4.43566 4.48848 4.57893 4.68862 4.83189 4.86940 4.93866 5.03853 5.16187 5.26261 5.37415 5.39326 5.50961 5.94653 5.99392 6.17831 7.04627 8.72037 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.038785 B = 0.004515 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.755282 B = 6199.677152 C = 6375.239931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.015 3.985 3 Si 0.995 3.005 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.539 4.539 8 H 0.073 0.927 9 S -0.200 6.200 10 C -0.086 4.086 11 C -0.089 4.089 12 C 0.059 3.941 13 N -0.520 5.520 14 C 0.044 3.956 15 C -0.112 4.112 16 C -0.199 4.199 17 C 0.004 3.996 18 F -0.168 7.168 19 C 0.064 3.936 20 H 0.271 0.729 21 H 0.057 0.943 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.056 0.944 25 H 0.043 0.957 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.090 0.910 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.424 -17.997 1.044 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.190 4.190 3 Si 0.817 3.183 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.687 4.687 8 H 0.091 0.909 9 S 0.028 5.972 10 C -0.235 4.235 11 C -0.127 4.127 12 C -0.070 4.070 13 N -0.241 5.241 14 C -0.083 4.083 15 C -0.150 4.150 16 C -0.219 4.219 17 C -0.017 4.017 18 F -0.147 7.147 19 C -0.064 4.064 20 H 0.080 0.920 21 H 0.076 0.924 22 H 0.086 0.914 23 H 0.090 0.910 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.101 0.899 31 H 0.138 0.862 32 H 0.109 0.891 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.880 -18.120 0.586 19.768 hybrid contribution 1.596 1.480 1.368 2.570 sum 9.476 -16.640 1.954 19.248 Atomic orbital electron populations 1.70163 1.07738 1.28554 1.48007 1.26080 0.96026 1.03150 0.93711 0.85004 0.78133 0.76288 0.78904 1.19116 1.19959 1.18731 1.23045 0.94747 0.91973 1.58890 0.90867 1.84661 1.14177 1.01282 1.97036 1.23133 1.00105 0.97365 1.02923 1.21279 0.98186 0.90836 1.02434 1.22176 0.96247 0.86995 1.01581 1.62868 1.13782 1.03005 1.44481 1.22522 0.92393 0.96264 0.97138 1.21031 0.97400 1.04188 0.92383 1.22608 0.93618 1.03242 1.02439 1.20661 0.90755 1.04830 0.85440 1.91454 1.75892 1.94105 1.53264 1.21557 0.95849 1.04639 0.84397 0.91963 0.92376 0.91387 0.90961 0.92491 0.93907 0.89045 0.88832 0.87925 0.87466 0.89902 0.86168 0.89148 0.86718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.47 13.22 21.65 0.29 -55.18 16 2 C 0.02 0.87 5.49 84.86 0.47 1.34 16 3 Si 0.99 44.20 29.55 68.60 2.03 46.23 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 5 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.54 -31.49 9.50 67.95 0.65 -30.85 16 8 H 0.07 4.11 7.80 -2.91 -0.02 4.08 16 9 S -0.20 -10.83 21.44 -56.49 -1.21 -12.04 16 10 C -0.09 -3.47 5.67 71.98 0.41 -3.06 16 11 C -0.09 -2.86 4.60 30.60 0.14 -2.72 16 12 C 0.06 1.45 4.50 86.30 0.39 1.84 16 13 N -0.52 -11.00 5.13 -900.91 -4.62 -15.62 16 14 C 0.04 0.65 6.06 86.27 0.52 1.17 16 15 C -0.11 -1.63 5.52 29.75 0.16 -1.47 16 16 C -0.20 -4.00 9.22 26.41 0.24 -3.76 16 17 C 0.00 0.09 6.87 26.36 0.18 0.27 16 18 F -0.17 -4.77 17.20 44.97 0.77 -4.00 16 19 C 0.06 1.44 5.67 85.39 0.48 1.92 16 20 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 21 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 22 H 0.07 2.65 8.14 -2.40 -0.02 2.63 16 23 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 24 H 0.06 1.94 6.41 -2.39 -0.02 1.92 16 25 H 0.04 1.06 5.56 -2.39 -0.01 1.04 16 26 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.09 1.18 8.08 -2.39 -0.02 1.16 16 28 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 1.27 6.86 -2.39 -0.02 1.25 16 31 H 0.12 2.31 8.06 -2.91 -0.02 2.28 16 32 H 0.09 2.32 5.65 -2.38 -0.01 2.31 16 33 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -67.65 284.68 1.99 -65.66 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 1.09 Total: 10.26 kcal Atomic # 6 Polarization: -38.95 SS G_CDS: 3.65 Total: -35.31 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: -4.33 Total: -70.80 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.77 Total: -4.00 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: -10.83 SS G_CDS: -1.21 Total: -12.04 kcal Total: -67.65 1.99 -65.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271617179.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.324 kcal (2) G-P(sol) polarization free energy of solvation -67.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds