Wall clock time and date at job start Sun Mar 29 2020 23:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46831 * 129.34088 * 3 2 1 5 5 C 1.36792 * 119.99507 * 270.58965 * 4 3 2 6 6 H 1.07999 * 120.00028 * 197.24461 * 5 4 3 7 7 C 1.39099 * 120.00498 * 17.25135 * 5 4 3 8 8 N 1.31326 * 119.99764 * 20.96733 * 7 5 4 9 9 Si 1.86804 * 120.00396 * 200.96905 * 7 5 4 10 10 H 1.48505 * 109.46771 * 59.99668 * 9 7 5 11 11 H 1.48503 * 109.47066 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46790 * 299.99876 * 9 7 5 13 13 C 1.34773 * 120.00213 * 90.59220 * 4 3 2 14 14 O 1.21565 * 119.99869 * 185.26686 * 13 4 3 15 15 C 1.47982 * 119.99729 * 5.27103 * 13 4 3 16 16 C 1.40204 * 121.15818 * 53.43589 * 15 13 4 17 17 C 1.38449 * 117.81448 * 180.25920 * 16 15 13 18 18 N 1.31945 * 119.97531 * 359.75597 * 17 16 15 19 19 N 1.28265 * 122.54397 * 359.97438 * 18 17 16 20 20 C 1.31901 * 122.33588 * 0.02562 * 19 18 17 21 21 C 1.50691 * 120.18065 * 179.97438 * 20 19 18 22 22 H 4.40638 * 5.51402 * 180.02562 * 4 1 2 23 23 H 1.09002 * 109.47261 * 9.33570 * 3 2 1 24 24 H 1.09004 * 109.47055 * 249.33657 * 3 2 1 25 25 H 0.97003 * 119.99940 * 180.02562 * 8 7 5 26 26 H 1.08005 * 121.09119 * 0.03558 * 16 15 13 27 27 H 1.08004 * 120.01481 * 179.76956 * 17 16 15 28 28 H 1.09003 * 109.47578 * 85.77022 * 21 20 19 29 29 H 1.09005 * 109.47418 * 325.76633 * 21 20 19 30 30 H 1.09007 * 109.46733 * 205.77058 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1339 0.8765 -1.0683 5 6 3.3506 0.3717 -2.3211 6 1 3.9594 0.9187 -3.0258 7 6 2.7868 -0.8459 -2.6875 8 7 1.7467 -1.3109 -2.0342 9 14 3.5089 -1.8198 -4.1086 10 1 4.9245 -2.1552 -3.8100 11 1 2.7328 -3.0720 -4.2956 12 1 3.4440 -1.0066 -5.3494 13 6 3.3693 2.1795 -0.8167 14 8 3.6818 2.9267 -1.7232 15 6 3.2475 2.7004 0.5630 16 6 3.9396 2.1048 1.6270 17 6 3.7709 2.6452 2.8905 18 7 2.9831 3.6898 3.0609 19 7 2.3511 4.2428 2.0914 20 6 2.4421 3.8068 0.8499 21 6 1.6774 4.4934 -0.2522 22 1 -1.0501 0.0000 0.0003 23 1 3.0099 -1.0132 -0.1667 24 1 3.0092 0.3635 0.9616 25 1 1.3537 -2.1603 -2.2895 26 1 4.5803 1.2502 1.4668 27 1 4.2842 2.2120 3.7363 28 1 2.2597 5.3342 -0.6293 29 1 0.7259 4.8559 0.1370 30 1 1.4934 3.7867 -1.0615 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281019734.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:13:38 Heat of formation + Delta-G solvation = 78.383226 kcal Electronic energy + Delta-G solvation = -17460.888946 eV Core-core repulsion = 14644.660502 eV Total energy + Delta-G solvation = -2816.228444 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.26490 -40.31314 -37.29167 -34.82986 -34.54561 -33.61671 -33.13216 -29.44427 -28.34502 -27.47407 -25.62788 -24.06927 -21.70628 -19.85788 -18.86480 -18.73000 -17.99054 -17.18590 -16.68623 -16.41013 -15.92309 -15.75915 -15.49474 -14.67621 -14.49174 -14.19023 -13.92779 -13.87872 -13.57852 -13.29875 -12.83420 -12.55586 -12.19765 -11.98107 -11.36782 -11.28749 -11.15768 -10.99961 -10.72825 -10.66639 -10.30942 -9.98420 -8.36112 -6.01849 -0.51326 -0.13767 1.34480 1.43861 1.52882 1.71583 2.04134 2.28566 2.37893 2.50551 2.88333 2.97878 3.00513 3.41489 3.60173 3.65611 3.87329 3.95036 4.25926 4.43742 4.46960 4.58749 4.64333 4.79915 4.91635 5.08273 5.22145 5.35674 5.39236 5.90379 6.30261 6.99295 7.13944 7.23074 7.63158 7.78376 8.54678 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.030298 B = 0.007900 C = 0.007481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.922461 B = 3543.302795 C = 3741.685661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.147 4.147 3 C 0.227 3.773 4 N -0.424 5.424 5 C -0.351 4.351 6 H 0.085 0.915 7 C 0.008 3.992 8 N -0.856 5.856 9 Si 0.989 3.011 10 H -0.262 1.262 11 H -0.273 1.273 12 H -0.279 1.279 13 C 0.473 3.527 14 O -0.611 6.611 15 C -0.111 4.111 16 C -0.095 4.095 17 C 0.048 3.952 18 N -0.262 5.262 19 N -0.262 5.262 20 C 0.093 3.907 21 C -0.091 4.091 22 H 0.227 0.773 23 H 0.097 0.903 24 H 0.100 0.900 25 H 0.277 0.723 26 H 0.181 0.819 27 H 0.226 0.774 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.756 -0.733 7.641 7.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.149 4.149 3 C 0.105 3.895 4 N -0.139 5.139 5 C -0.479 4.479 6 H 0.102 0.898 7 C -0.197 4.197 8 N -0.491 5.491 9 Si 0.812 3.188 10 H -0.187 1.187 11 H -0.198 1.198 12 H -0.204 1.204 13 C 0.263 3.737 14 O -0.498 6.498 15 C -0.125 4.125 16 C -0.124 4.124 17 C -0.116 4.116 18 N -0.103 5.103 19 N -0.105 5.105 20 C -0.052 4.052 21 C -0.149 4.149 22 H 0.244 0.756 23 H 0.115 0.885 24 H 0.117 0.883 25 H 0.087 0.913 26 H 0.198 0.802 27 H 0.242 0.758 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.133 0.514 8.247 8.340 hybrid contribution 0.487 -1.568 -2.042 2.620 sum 1.620 -1.053 6.205 6.499 Atomic orbital electron populations 1.25031 0.96340 1.02184 1.03248 1.23234 0.94937 0.98956 0.97767 1.18580 0.84912 0.96225 0.89774 1.43817 1.53931 1.05987 1.10171 1.19657 1.31328 1.04729 0.92143 0.89756 1.26113 0.94311 0.98146 1.01181 1.70131 1.17151 1.20359 1.41454 0.85061 0.78878 0.77226 0.77611 1.18695 1.19806 1.20427 1.18027 0.85998 0.82109 0.87585 1.90611 1.55433 1.56946 1.46844 1.21250 0.98500 0.97104 0.95685 1.23002 0.97236 1.00066 0.92131 1.24859 0.95656 0.92894 0.98206 1.72706 1.04818 1.08365 1.24425 1.72868 1.16750 1.23984 0.96901 1.23032 0.94299 0.92523 0.95337 1.20602 1.00133 1.00456 0.93750 0.75585 0.88498 0.88262 0.91276 0.80171 0.75809 0.89094 0.88456 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.11 19.12 74.32 1.42 -8.69 16 2 C -0.15 -6.43 10.99 31.12 0.34 -6.09 16 3 C 0.23 9.40 5.01 84.57 0.42 9.82 16 4 N -0.42 -20.40 2.58 -648.57 -1.67 -22.08 16 5 C -0.35 -18.46 9.30 84.13 0.78 -17.68 16 6 H 0.08 4.75 7.42 -2.91 -0.02 4.72 16 7 C 0.01 0.41 4.91 84.98 0.42 0.83 16 8 N -0.86 -41.72 8.98 21.69 0.19 -41.52 16 9 Si 0.99 39.06 29.60 68.60 2.03 41.09 16 10 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 11 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 12 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 13 C 0.47 22.54 6.15 86.83 0.53 23.07 16 14 O -0.61 -33.50 15.70 -3.92 -0.06 -33.56 16 15 C -0.11 -4.29 5.01 -19.83 -0.10 -4.39 16 16 C -0.09 -2.75 7.75 22.80 0.18 -2.57 16 17 C 0.05 1.18 11.30 84.73 0.96 2.14 16 18 N -0.26 -8.43 11.48 -57.35 -0.66 -9.09 16 19 N -0.26 -9.55 11.42 -46.91 -0.54 -10.08 16 20 C 0.09 3.55 6.91 42.93 0.30 3.84 16 21 C -0.09 -3.28 9.51 71.23 0.68 -2.60 16 22 H 0.23 7.35 7.80 -4.41 -0.03 7.32 16 23 H 0.10 4.10 6.85 -2.39 -0.02 4.09 16 24 H 0.10 3.35 4.32 -2.39 -0.01 3.34 16 25 H 0.28 12.79 8.31 -92.71 -0.77 12.02 16 26 H 0.18 4.18 7.41 -2.91 -0.02 4.15 16 27 H 0.23 3.08 8.06 -2.91 -0.02 3.05 16 28 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 29 H 0.10 2.97 8.14 -2.38 -0.02 2.95 16 30 H 0.06 2.36 6.68 -2.38 -0.02 2.35 16 Total: -1.00 -66.36 270.18 6.40 -59.96 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 1.17 Total: 17.59 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 5.93 Total: -2.31 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -2.67 Total: -82.77 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -0.06 Total: -33.56 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.09 kcal Total: -66.36 6.40 -59.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281019734.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.344 kcal (2) G-P(sol) polarization free energy of solvation -66.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds