Wall clock time and date at job start Sun Mar 29 2020 23:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46739 * 35.01006 * 3 2 1 5 5 C 1.36771 * 120.00168 * 265.73863 * 4 3 2 6 6 H 1.08004 * 120.00090 * 323.74257 * 5 4 3 7 7 C 1.39113 * 120.00040 * 143.73989 * 5 4 3 8 8 N 1.31314 * 119.99954 * 341.12488 * 7 5 4 9 9 Si 1.86808 * 119.99979 * 161.13011 * 7 5 4 10 10 H 1.48500 * 109.47052 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47176 * 119.99902 * 9 7 5 12 12 H 1.48502 * 109.46767 * 239.99468 * 9 7 5 13 13 C 1.34774 * 119.99898 * 85.74597 * 4 3 2 14 14 O 1.21579 * 119.99933 * 174.56670 * 13 4 3 15 15 C 1.47982 * 120.00435 * 354.84239 * 13 4 3 16 16 C 1.39544 * 120.11093 * 174.15328 * 15 13 4 17 17 N 1.32048 * 119.85853 * 179.68430 * 16 15 13 18 18 C 1.32167 * 120.08421 * 0.58723 * 17 16 15 19 19 C 1.50703 * 119.88880 * 179.72739 * 18 17 16 20 20 C 1.38705 * 120.21595 * 359.71261 * 18 17 16 21 21 N 1.31810 * 120.13845 * 359.97204 * 20 18 17 22 22 H 4.40632 * 5.51324 * 180.02562 * 4 1 2 23 23 H 1.08994 * 109.47220 * 275.01041 * 3 2 1 24 24 H 1.08994 * 109.47093 * 155.01049 * 3 2 1 25 25 H 0.97002 * 119.99823 * 185.03942 * 8 7 5 26 26 H 1.07997 * 120.06511 * 359.97438 * 16 15 13 27 27 H 1.08996 * 109.47076 * 269.97766 * 19 18 17 28 28 H 1.09002 * 109.47132 * 29.98594 * 19 18 17 29 29 H 1.09006 * 109.46750 * 149.97905 * 19 18 17 30 30 H 1.08000 * 119.93167 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.1304 -0.7925 5 6 3.4462 -2.3121 -0.1781 6 1 3.8978 -2.3080 0.8030 7 6 3.1813 -3.5191 -0.8169 8 7 2.3209 -3.5625 -1.8079 9 14 4.0494 -5.0784 -0.2647 10 1 4.9634 -4.7633 0.8625 11 1 3.0420 -6.0755 0.1781 12 1 4.8332 -5.6356 -1.3962 13 6 3.2777 -1.0066 -2.1269 14 8 3.7755 -1.9094 -2.7713 15 6 2.8343 0.2307 -2.8069 16 6 3.0909 0.4127 -4.1664 17 7 2.6875 1.5159 -4.7696 18 6 2.0523 2.4511 -4.0849 19 6 1.5993 3.7111 -4.7764 20 6 1.8010 2.2763 -2.7320 21 7 2.1943 1.1758 -2.1226 22 1 -1.0498 -0.0001 -0.0003 23 1 3.0094 -0.0889 1.0237 24 1 3.0089 0.9322 -0.4341 25 1 2.0811 -4.4144 -2.2051 26 1 3.6141 -0.3492 -4.7250 27 1 2.3882 4.4610 -4.7186 28 1 1.3808 3.4934 -5.8219 29 1 0.7011 4.0903 -4.2888 30 1 1.2812 3.0433 -2.1770 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281469049.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:14 Heat of formation + Delta-G solvation = 79.152577 kcal Electronic energy + Delta-G solvation = -17355.645591 eV Core-core repulsion = 14539.450509 eV Total energy + Delta-G solvation = -2816.195082 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.18264 -39.98004 -36.69396 -35.53779 -34.30901 -33.60926 -32.89797 -29.43716 -28.14495 -26.56626 -25.46286 -24.13905 -22.00085 -19.37553 -19.27614 -18.31123 -17.67801 -16.96847 -16.86534 -16.23879 -15.95135 -15.62767 -15.38822 -14.43604 -14.30328 -14.15954 -13.57457 -13.54537 -13.33026 -13.11216 -12.86760 -12.71990 -12.21993 -12.14198 -12.09589 -11.33932 -11.00838 -10.76144 -10.55507 -10.08715 -9.82873 -9.32039 -8.29641 -6.02181 -0.45160 0.10448 1.38419 1.46030 1.55305 1.90983 2.20318 2.26434 2.36855 2.80674 3.00299 3.18183 3.24364 3.40576 3.54370 3.88717 4.00667 4.15671 4.31157 4.54655 4.69710 4.82980 4.85393 4.94354 5.15899 5.29844 5.39074 5.48871 6.03590 6.23543 6.72124 6.85992 6.98757 7.07990 7.48950 8.17984 8.78531 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.031914 B = 0.007865 C = 0.006789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.159905 B = 3559.023019 C = 4123.478066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.169 4.169 3 C 0.208 3.792 4 N -0.435 5.435 5 C -0.360 4.360 6 H 0.101 0.899 7 C 0.010 3.990 8 N -0.852 5.852 9 Si 0.985 3.015 10 H -0.250 1.250 11 H -0.274 1.274 12 H -0.292 1.292 13 C 0.495 3.505 14 O -0.572 6.572 15 C 0.029 3.971 16 C 0.084 3.916 17 N -0.457 5.457 18 C 0.080 3.920 19 C -0.093 4.093 20 C 0.051 3.949 21 N -0.418 5.418 22 H 0.236 0.764 23 H 0.092 0.908 24 H 0.118 0.882 25 H 0.263 0.737 26 H 0.161 0.839 27 H 0.102 0.898 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.177 14.265 -0.069 14.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.171 4.171 3 C 0.086 3.914 4 N -0.153 5.153 5 C -0.488 4.488 6 H 0.119 0.881 7 C -0.198 4.198 8 N -0.487 5.487 9 Si 0.809 3.191 10 H -0.173 1.173 11 H -0.199 1.199 12 H -0.219 1.219 13 C 0.283 3.717 14 O -0.453 6.453 15 C -0.109 4.109 16 C -0.075 4.075 17 N -0.172 5.172 18 C -0.063 4.063 19 C -0.151 4.151 20 C -0.113 4.113 21 N -0.136 5.136 22 H 0.252 0.748 23 H 0.110 0.890 24 H 0.136 0.864 25 H 0.072 0.928 26 H 0.178 0.822 27 H 0.120 0.880 28 H 0.096 0.904 29 H 0.129 0.871 30 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -2.892 13.628 -0.527 13.941 hybrid contribution 0.031 -1.314 -0.026 1.315 sum -2.861 12.313 -0.553 12.654 Atomic orbital electron populations 1.25281 0.96456 1.01713 1.02339 1.23785 0.95298 0.99144 0.98851 1.19001 0.84345 0.91396 0.96695 1.43449 1.54892 1.11542 1.05379 1.19743 1.41718 0.82994 1.04300 0.88143 1.26223 0.95409 1.02620 0.95558 1.69985 1.28648 1.26769 1.23321 0.85025 0.78555 0.77472 0.78056 1.17286 1.19935 1.21862 1.17693 0.84826 0.85816 0.83348 1.90562 1.47982 1.41686 1.65062 1.22349 0.98848 0.95718 0.94027 1.23440 0.96554 0.95429 0.92089 1.68416 1.09459 1.01007 1.38358 1.23328 0.92949 0.96869 0.93200 1.20844 1.03307 0.90037 1.00869 1.24504 0.97404 0.95845 0.93566 1.68968 1.06285 1.00979 1.37323 0.74770 0.89045 0.86444 0.92792 0.82159 0.88016 0.90406 0.87135 0.77101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -8.93 19.25 74.32 1.43 -7.50 16 2 C -0.17 -7.08 11.82 31.13 0.37 -6.71 16 3 C 0.21 8.78 5.47 84.57 0.46 9.24 16 4 N -0.43 -23.00 2.53 -648.59 -1.64 -24.64 16 5 C -0.36 -20.17 9.29 84.13 0.78 -19.39 16 6 H 0.10 5.20 7.90 -2.91 -0.02 5.18 16 7 C 0.01 0.55 4.38 84.98 0.37 0.92 16 8 N -0.85 -52.86 11.18 21.69 0.24 -52.62 16 9 Si 0.99 45.34 29.60 68.60 2.03 47.37 16 10 H -0.25 -10.54 7.11 99.48 0.71 -9.84 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 13 C 0.49 27.28 6.78 86.83 0.59 27.87 16 14 O -0.57 -35.85 13.67 -3.97 -0.05 -35.90 16 15 C 0.03 1.30 6.56 41.85 0.27 1.57 16 16 C 0.08 3.48 10.78 84.98 0.92 4.39 16 17 N -0.46 -15.81 10.41 -182.16 -1.90 -17.70 16 18 C 0.08 2.11 6.79 42.62 0.29 2.40 16 19 C -0.09 -1.38 10.19 71.24 0.73 -0.66 16 20 C 0.05 1.38 10.88 84.81 0.92 2.30 16 21 N -0.42 -15.64 5.02 -184.37 -0.93 -16.57 16 22 H 0.24 6.65 7.80 -4.43 -0.03 6.62 16 23 H 0.09 3.49 8.00 -2.39 -0.02 3.47 16 24 H 0.12 4.52 5.63 -2.39 -0.01 4.50 16 25 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 26 H 0.16 6.92 7.66 -2.91 -0.02 6.90 16 27 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.11 0.98 8.08 -2.38 -0.02 0.96 16 30 H 0.21 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -77.67 273.66 6.05 -71.63 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 1.16 Total: 13.99 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 7.13 Total: 14.45 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -4.22 Total: -111.53 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -0.05 Total: -35.90 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -77.67 6.05 -71.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281469049.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.780 kcal (2) G-P(sol) polarization free energy of solvation -77.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds