Wall clock time and date at job start Sun Mar 29 2020 22:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 119.99584 * 2 1 4 4 N 1.46496 * 109.47090 * 125.00124 * 3 2 1 5 5 C 1.46501 * 119.99951 * 274.99830 * 4 3 2 6 6 C 1.50700 * 109.47041 * 274.99836 * 5 4 3 7 7 H 1.07995 * 119.99960 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00151 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00389 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99652 * 0.02562 * 8 6 5 11 11 H 1.48509 * 109.46993 * 89.99802 * 10 8 6 12 12 H 1.48493 * 109.47228 * 209.99745 * 10 8 6 13 13 H 1.48498 * 109.47478 * 329.99953 * 10 8 6 14 14 S 1.65599 * 120.00159 * 95.00067 * 4 3 2 15 15 O 1.42105 * 104.27797 * 26.07081 * 14 4 3 16 16 O 1.42101 * 104.27901 * 153.92789 * 14 4 3 17 17 C 1.81397 * 104.44825 * 269.99969 * 14 4 3 18 18 C 1.53004 * 117.49799 * 253.62057 * 17 14 4 19 19 C 1.53005 * 117.49881 * 184.99731 * 17 14 4 20 20 H 1.08002 * 119.99518 * 179.97438 * 1 2 3 21 21 H 1.07997 * 120.00182 * 0.02562 * 1 2 3 22 22 H 1.07997 * 120.00306 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.47596 * 4.99634 * 3 2 1 24 24 H 1.09002 * 109.47208 * 245.00149 * 3 2 1 25 25 H 1.08993 * 109.47174 * 35.00253 * 5 4 3 26 26 H 1.09004 * 109.47087 * 155.00351 * 5 4 3 27 27 H 0.97001 * 120.00023 * 180.02562 * 9 8 6 28 28 H 1.09003 * 115.55418 * 39.33032 * 17 14 4 29 29 H 1.08992 * 117.49685 * 359.97438 * 18 17 14 30 30 H 1.09003 * 117.49682 * 145.01889 * 18 17 14 31 31 H 1.08999 * 117.50112 * 214.97366 * 19 17 14 32 32 H 1.08999 * 117.50121 * 0.02562 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3320 1.1314 5 6 2.5283 1.7622 2.4522 6 6 2.5990 3.2647 2.5449 7 1 2.9544 3.8414 1.7039 8 6 2.2087 3.9031 3.7030 9 7 2.2699 5.2143 3.7838 10 14 1.5931 2.9054 5.1574 11 1 2.7381 2.5498 6.0339 12 1 0.6105 3.7087 5.9283 13 1 0.9416 1.6646 4.6664 14 16 4.5712 0.8761 0.9173 15 8 4.8253 1.1284 -0.4579 16 8 5.2786 1.5740 1.9330 17 6 4.5759 -0.9073 1.2487 18 6 5.1926 -1.3792 2.5671 19 6 5.9286 -1.6224 1.2479 20 1 -0.5399 -0.9354 -0.0004 21 1 -0.5400 0.9353 -0.0004 22 1 1.8500 -0.9352 -0.0004 23 1 1.3585 2.1317 0.0895 24 1 2.6212 1.4027 -0.9314 25 1 1.4983 1.4371 2.5982 26 1 3.1613 1.3206 3.2220 27 1 1.9957 5.6633 4.5987 28 1 3.7152 -1.4583 0.8697 29 1 5.5957 -0.6180 3.2350 30 1 4.7373 -2.2407 3.0557 31 1 5.9576 -2.6440 0.8688 32 1 6.8156 -1.0212 1.0486 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292572055.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:25 Heat of formation + Delta-G solvation = -15.125687 kcal Electronic energy + Delta-G solvation = -16480.066773 eV Core-core repulsion = 13762.934679 eV Total energy + Delta-G solvation = -2717.132094 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -37.06503 -36.60176 -36.36250 -35.33171 -33.18585 -31.94720 -28.05487 -25.03104 -23.35403 -22.62987 -21.82629 -19.75478 -18.26960 -17.29446 -16.86806 -16.35165 -15.89229 -15.23189 -14.53613 -14.15894 -13.88367 -13.35946 -13.15344 -12.54320 -12.15983 -11.88286 -11.83912 -11.56035 -11.46923 -11.28503 -11.13773 -11.01069 -10.92531 -10.65874 -10.44673 -10.31909 -10.10070 -9.52822 -9.20786 -8.56253 -8.10906 -6.04826 -4.03275 0.78048 2.42368 3.09198 3.28771 3.34170 3.35301 3.50022 4.29507 4.40815 4.48201 4.63790 4.81689 5.06826 5.18021 5.26404 5.34494 5.37356 5.49657 5.61647 5.76768 5.91125 6.02988 6.22961 6.37444 6.75461 6.77089 6.89170 7.11318 7.39709 7.61615 8.52932 9.01341 9.54342 11.08867 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.020482 B = 0.009913 C = 0.008567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.746156 B = 2823.756424 C = 3267.410130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.173 4.173 3 C 0.143 3.857 4 N -0.971 5.971 5 C 0.228 3.772 6 C -0.526 4.526 7 H 0.079 0.921 8 C 0.073 3.927 9 N -0.896 5.896 10 Si 0.869 3.131 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.264 1.264 14 S 2.631 3.369 15 O -0.967 6.967 16 O -0.932 6.932 17 C -0.693 4.693 18 C -0.126 4.126 19 C -0.134 4.134 20 H 0.092 0.908 21 H 0.101 0.899 22 H 0.101 0.899 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.034 0.966 26 H 0.030 0.970 27 H 0.264 0.736 28 H 0.152 0.848 29 H 0.118 0.882 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.951 -15.088 -4.670 15.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.193 4.193 3 C 0.018 3.982 4 N -0.808 5.808 5 C 0.105 3.895 6 C -0.565 4.565 7 H 0.097 0.903 8 C -0.130 4.130 9 N -0.535 5.535 10 Si 0.696 3.304 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.189 1.189 14 S 2.720 3.280 15 O -0.957 6.957 16 O -0.922 6.922 17 C -0.798 4.798 18 C -0.164 4.164 19 C -0.172 4.172 20 H 0.111 0.889 21 H 0.120 0.880 22 H 0.119 0.881 23 H 0.113 0.887 24 H 0.110 0.890 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.074 0.926 28 H 0.170 0.830 29 H 0.137 0.863 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.626 -14.376 -4.766 15.233 hybrid contribution -0.926 -1.147 0.986 1.774 sum 0.700 -15.523 -3.780 15.992 Atomic orbital electron populations 1.23824 0.95817 1.01797 1.00526 1.23528 0.96698 0.99060 0.99973 1.20394 0.93360 0.95254 0.89241 1.57147 1.27513 1.78917 1.17233 1.19433 0.95477 0.96595 0.77997 1.21367 1.43812 0.89657 1.01713 0.90334 1.24854 0.95210 0.94778 0.98133 1.69893 1.48017 1.07723 1.27840 0.86960 0.79285 0.80672 0.83471 1.19820 1.21015 1.18918 1.04355 0.73954 0.75574 0.74138 1.93517 1.84312 1.83599 1.34284 1.93634 1.71397 1.67534 1.59639 1.33001 1.05658 1.27845 1.13314 1.22805 1.00664 1.03779 0.89151 1.22689 0.91380 1.01869 1.01273 0.88915 0.88031 0.88143 0.88730 0.88995 0.94851 0.95256 0.92591 0.83033 0.86332 0.87423 0.87289 0.87789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.33 14.32 29.01 0.42 -1.91 16 2 C -0.17 -2.44 9.84 -36.03 -0.35 -2.80 16 3 C 0.14 2.48 6.09 -5.20 -0.03 2.45 16 4 N -0.97 -19.58 2.68 -116.95 -0.31 -19.89 16 5 C 0.23 5.34 4.08 -5.19 -0.02 5.32 16 6 C -0.53 -15.00 9.94 -34.44 -0.34 -15.34 16 7 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 8 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 9 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 10 Si 0.87 21.04 27.47 -169.99 -4.67 16.37 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 14 S 2.63 50.17 5.73 -107.50 -0.62 49.55 16 15 O -0.97 -19.87 16.53 -57.54 -0.95 -20.82 16 16 O -0.93 -21.34 16.29 -57.54 -0.94 -22.28 16 17 C -0.69 -9.55 6.60 -26.73 -0.18 -9.73 16 18 C -0.13 -1.55 10.17 -26.73 -0.27 -1.82 16 19 C -0.13 -1.51 10.30 -26.72 -0.28 -1.79 16 20 H 0.09 0.99 8.06 -52.49 -0.42 0.57 16 21 H 0.10 1.30 7.84 -52.49 -0.41 0.89 16 22 H 0.10 1.23 7.02 -52.49 -0.37 0.86 16 23 H 0.09 1.70 7.76 -51.93 -0.40 1.30 16 24 H 0.09 1.53 6.82 -51.93 -0.35 1.17 16 25 H 0.03 0.75 7.17 -51.93 -0.37 0.38 16 26 H 0.03 0.68 7.04 -51.93 -0.37 0.31 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.15 1.79 7.10 -51.93 -0.37 1.42 16 29 H 0.12 1.57 7.68 -51.93 -0.40 1.17 16 30 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 287.48 15.07 4.33 4.33 Total: -1.00 -34.23 287.48 -7.86 -42.09 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -4.32 Total: 1.14 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: -1.15 Total: -23.61 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 0.46 Total: -46.77 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -1.89 Total: -43.10 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Atomic # 16 Polarization: 50.17 SS G_CDS: -0.62 Total: 49.55 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -34.23 -7.86 -42.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292572055.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.966 kcal (2) G-P(sol) polarization free energy of solvation -34.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds