Wall clock time and date at job start Sun Mar 29 2020 22:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 115.51461 * 2 1 4 4 C 1.52874 * 117.38939 * 214.76761 * 2 1 3 5 5 H 1.09002 * 120.23939 * 140.79108 * 4 2 1 6 6 C 1.54391 * 118.19812 * 343.65740 * 4 2 1 7 7 N 1.48138 * 104.72498 * 273.00507 * 6 4 2 8 8 S 1.65603 * 127.84277 * 219.52554 * 7 6 4 9 9 O 1.42092 * 106.40598 * 203.54255 * 8 7 6 10 10 O 1.42109 * 106.39797 * 336.46301 * 8 7 6 11 11 C 1.76193 * 107.21790 * 89.99974 * 8 7 6 12 12 H 1.08007 * 119.99894 * 0.02562 * 11 8 7 13 13 C 1.37876 * 120.00281 * 180.02562 * 11 8 7 14 14 N 1.31513 * 119.99918 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 120.00275 * 180.02562 * 13 11 8 16 16 H 1.48502 * 109.46969 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.47038 * 120.00239 * 15 13 11 18 18 H 1.48502 * 109.47042 * 240.00100 * 15 13 11 19 19 C 1.48146 * 104.32478 * 39.52858 * 7 6 4 20 20 C 1.53005 * 117.44447 * 145.41616 * 2 1 3 21 21 H 1.08998 * 119.53563 * 221.01541 * 20 2 1 22 22 H 1.09001 * 109.47426 * 281.29134 * 1 2 3 23 23 H 1.09000 * 109.47630 * 41.28851 * 1 2 3 24 24 H 1.09004 * 109.47491 * 161.29257 * 1 2 3 25 25 H 1.09005 * 109.47359 * 205.41658 * 3 2 1 26 26 H 1.09003 * 109.47202 * 325.41317 * 3 2 1 27 27 H 1.08998 * 109.47153 * 85.41915 * 3 2 1 28 28 H 1.09002 * 110.40511 * 154.16031 * 6 4 2 29 29 H 1.08997 * 110.40732 * 31.85271 * 6 4 2 30 30 H 0.96998 * 120.00737 * 180.02562 * 14 13 11 31 31 H 1.09001 * 110.40901 * 79.19353 * 19 7 6 32 32 H 1.08996 * 110.41074 * 201.63284 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1890 1.3808 0.0000 4 6 2.2332 -1.1150 -0.7740 5 1 3.1336 -0.9002 -1.3496 6 6 1.4095 -2.3589 -1.1714 7 7 1.5054 -3.2633 -0.0021 8 16 1.6800 -4.9101 -0.0031 9 8 1.1810 -5.3674 1.2463 10 8 1.1809 -5.3658 -1.2532 11 6 3.4086 -5.2513 -0.0033 12 1 4.1195 -4.4382 -0.0025 13 6 3.8538 -6.5562 -0.0046 14 7 2.9882 -7.5463 -0.0062 15 14 5.6865 -6.9179 -0.0042 16 1 6.4432 -5.6402 -0.0017 17 1 6.0359 -7.7020 1.2075 18 1 6.0371 -7.6991 -1.2174 19 6 1.4095 -2.3604 1.1685 20 6 2.2351 -1.1179 0.7707 21 1 3.1178 -0.8857 1.3666 22 1 -0.3634 0.2012 1.0078 23 1 -0.3634 0.7722 -0.6781 24 1 -0.3634 -0.9734 -0.3296 25 1 3.1832 1.3089 -0.4411 26 1 1.5819 2.0731 -0.5834 27 1 2.2714 1.7440 1.0244 28 1 1.8385 -2.8326 -2.0545 29 1 0.3709 -2.0841 -1.3553 30 1 3.3012 -8.4644 -0.0067 31 1 0.3711 -2.0841 1.3514 32 1 1.8385 -2.8352 2.0508 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307601833.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:39 Heat of formation + Delta-G solvation = -85.651103 kcal Electronic energy + Delta-G solvation = -16503.386699 eV Core-core repulsion = 13783.196394 eV Total energy + Delta-G solvation = -2720.190306 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.07900 -37.47078 -36.20689 -35.41244 -35.07357 -29.90736 -29.44382 -28.48122 -28.28243 -24.54561 -21.19971 -20.85364 -19.44181 -19.19205 -18.34431 -17.16930 -16.37016 -16.30083 -15.96545 -15.55697 -15.07281 -14.50852 -14.06844 -13.73559 -13.48267 -13.26840 -13.10846 -13.05608 -12.94905 -12.78446 -12.59853 -12.49218 -12.32769 -12.31288 -12.17848 -11.96110 -11.30157 -11.02084 -10.60835 -10.43452 -9.83614 -8.78303 -7.52916 0.20994 1.30072 1.30289 1.48862 2.17551 2.51110 2.59227 2.88279 3.51883 3.64813 3.77064 3.87796 4.13558 4.22812 4.25361 4.43409 4.59260 4.64712 4.73129 4.81390 4.89646 5.02084 5.09806 5.15746 5.19203 5.21795 5.27978 5.36442 5.41063 5.60642 5.69147 5.88361 6.73650 8.17375 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.034821 B = 0.007753 C = 0.006966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.913541 B = 3610.450407 C = 4018.477200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.069 4.069 3 C -0.109 4.109 4 C -0.171 4.171 5 H 0.128 0.872 6 C 0.139 3.861 7 N -1.028 6.028 8 S 2.736 3.264 9 O -1.039 7.039 10 O -1.039 7.039 11 C -1.039 5.039 12 H 0.116 0.884 13 C 0.068 3.932 14 N -0.896 5.896 15 Si 0.993 3.007 16 H -0.248 1.248 17 H -0.257 1.257 18 H -0.257 1.257 19 C 0.142 3.858 20 C -0.175 4.175 21 H 0.129 0.871 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.300 0.700 31 H 0.079 0.921 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.969 16.898 0.018 16.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.069 4.069 3 C -0.166 4.166 4 C -0.191 4.191 5 H 0.146 0.854 6 C 0.014 3.986 7 N -0.866 5.866 8 S 2.839 3.161 9 O -1.030 7.030 10 O -1.030 7.030 11 C -1.173 5.173 12 H 0.134 0.866 13 C -0.144 4.144 14 N -0.527 5.527 15 Si 0.810 3.190 16 H -0.171 1.171 17 H -0.181 1.181 18 H -0.181 1.181 19 C 0.017 3.983 20 C -0.195 4.195 21 H 0.147 0.853 22 H 0.090 0.910 23 H 0.098 0.902 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.147 15.943 0.019 15.944 hybrid contribution 1.233 -0.780 0.011 1.459 sum 1.380 15.163 0.030 15.226 Atomic orbital electron populations 1.21556 0.91938 1.02400 1.02989 1.21781 0.95360 0.91095 0.98713 1.21340 1.00253 0.92067 1.02984 1.23960 1.02697 0.97640 0.94772 0.85394 1.21616 1.00427 0.88722 0.87828 1.59579 1.89933 1.23191 1.13865 0.99453 0.76428 0.68835 0.71369 1.93292 1.83253 1.79372 1.47056 1.93295 1.83254 1.79420 1.47001 1.30997 1.19038 1.00637 1.66582 0.86574 1.26078 1.06921 0.93974 0.87471 1.69988 1.39019 1.02186 1.41537 0.85074 0.74499 0.79804 0.79591 1.17131 1.18094 1.18084 1.21554 1.00231 0.88738 0.87746 1.23861 1.03097 0.97601 0.94944 0.85326 0.91035 0.90164 0.93105 0.92035 0.90401 0.90955 0.91231 0.89995 0.88984 0.90325 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.53 71.98 0.61 -1.95 16 2 C -0.07 -1.44 2.66 -52.22 -0.14 -1.58 16 3 C -0.11 -1.62 9.84 71.98 0.71 -0.91 16 4 C -0.17 -4.59 6.71 -9.86 -0.07 -4.66 16 5 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 6 C 0.14 4.82 6.52 86.54 0.56 5.39 16 7 N -1.03 -44.05 3.72 -502.86 -1.87 -45.92 16 8 S 2.74 154.85 5.31 -56.49 -0.30 154.55 16 9 O -1.04 -64.67 17.72 -128.00 -2.27 -66.94 16 10 O -1.04 -64.66 17.72 -128.00 -2.27 -66.93 16 11 C -1.04 -59.47 9.74 67.73 0.66 -58.81 16 12 H 0.12 6.09 7.81 -2.91 -0.02 6.07 16 13 C 0.07 3.89 5.46 84.65 0.46 4.36 16 14 N -0.90 -54.77 13.19 21.45 0.28 -54.49 16 15 Si 0.99 42.20 29.54 68.60 2.03 44.22 16 16 H -0.25 -9.86 7.11 99.48 0.71 -9.16 16 17 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 18 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 19 C 0.14 4.94 6.55 86.54 0.57 5.51 16 20 C -0.18 -4.71 6.83 -9.82 -0.07 -4.78 16 21 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 22 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.08 1.23 8.04 -2.39 -0.02 1.21 16 24 H 0.05 1.18 4.92 -2.39 -0.01 1.17 16 25 H 0.06 0.89 7.97 -2.38 -0.02 0.87 16 26 H 0.08 0.93 8.01 -2.39 -0.02 0.91 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.08 2.55 5.96 -2.39 -0.01 2.53 16 30 H 0.30 16.33 8.31 -92.71 -0.77 15.56 16 31 H 0.08 2.44 6.75 -2.39 -0.02 2.43 16 32 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -77.05 277.98 0.02 -77.03 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 1.11 Total: 15.90 kcal Atomic # 6 Polarization: -60.73 SS G_CDS: 3.30 Total: -57.43 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -1.59 Total: -100.41 kcal Atomic # 8 Polarization: -129.33 SS G_CDS: -4.54 Total: -133.87 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: 154.85 SS G_CDS: -0.30 Total: 154.55 kcal Total: -77.05 0.02 -77.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307601833.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.619 kcal (2) G-P(sol) polarization free energy of solvation -77.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds