Wall clock time and date at job start Sun Mar 29 2020 23:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99301 * 3 2 1 5 5 H 1.48496 * 109.47547 * 29.99797 * 3 2 1 6 6 H 1.48499 * 109.47030 * 149.99701 * 3 2 1 7 7 C 1.37870 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00310 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 180.02562 * 7 2 1 10 10 N 1.46893 * 109.47176 * 180.02562 * 9 7 2 11 11 C 1.46903 * 110.99924 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47245 * 179.97438 * 11 10 9 13 13 C 1.39873 * 126.04180 * 90.01853 * 12 11 10 14 14 N 1.30835 * 108.20227 * 179.97438 * 13 12 11 15 15 N 1.40079 * 108.20831 * 0.02562 * 14 13 12 16 16 C 1.46495 * 126.04001 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.47285 * 305.03096 * 16 15 14 18 18 F 1.39894 * 109.47316 * 174.99865 * 17 16 15 19 19 F 1.39900 * 109.46568 * 294.99464 * 17 16 15 20 20 C 1.34953 * 107.92753 * 359.75682 * 15 14 13 21 21 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 23 23 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 24 24 H 1.00893 * 111.00654 * 56.04333 * 10 9 7 25 25 H 1.08993 * 109.46933 * 299.99334 * 11 10 9 26 26 H 1.09003 * 109.46864 * 60.00013 * 11 10 9 27 27 H 1.07999 * 125.89451 * 359.96791 * 13 12 11 28 28 H 1.09008 * 109.47066 * 65.02870 * 16 15 14 29 29 H 1.08996 * 109.47777 * 185.02425 * 16 15 14 30 30 H 1.09000 * 109.47376 * 54.99531 * 17 16 15 31 31 H 1.07988 * 126.13153 * 180.23565 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0013 -2.5789 0.0010 11 6 5.4698 -2.6180 0.0009 12 6 5.9341 -4.0517 0.0015 13 6 6.1879 -4.8350 -1.1293 14 7 6.5721 -6.0195 -0.7280 15 7 6.5743 -6.0278 0.6727 16 6 6.9407 -7.1598 1.5274 17 6 6.0936 -8.3774 1.1521 18 9 6.5209 -9.4876 1.8882 19 9 4.7495 -8.1167 1.4393 20 6 6.1839 -4.8073 1.0960 21 1 -0.4850 0.8400 -0.0004 22 1 3.8752 -0.6803 -0.8889 23 1 3.8746 -0.6798 0.8911 24 1 3.6261 -3.0951 -0.7805 25 1 5.8466 -2.1141 -0.8890 26 1 5.8467 -2.1141 0.8910 27 1 6.0846 -4.5168 -2.1561 28 1 7.9960 -7.3942 1.3873 29 1 6.7617 -6.9003 2.5708 30 1 6.2044 -8.5829 0.0874 31 1 6.0862 -4.4909 2.1238 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308825431.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:43:57 Heat of formation + Delta-G solvation = -22.385822 kcal Electronic energy + Delta-G solvation = -16918.284099 eV Core-core repulsion = 13679.289546 eV Total energy + Delta-G solvation = -3238.994553 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.29780 -47.29577 -41.21042 -35.68839 -34.01979 -32.41854 -30.52709 -29.34884 -27.05553 -24.24156 -23.61872 -21.10937 -20.96544 -20.14350 -18.09574 -17.75574 -17.09003 -16.68427 -16.16781 -15.03781 -14.96939 -14.29211 -14.20525 -14.03557 -13.66635 -13.57701 -13.52129 -13.06582 -12.70213 -12.51647 -12.37267 -11.78653 -11.60581 -11.41501 -10.80755 -10.56081 -10.31281 -9.81586 -9.49099 -9.27041 -8.58912 -8.41679 -7.41987 -6.03922 -4.01888 1.78208 2.18620 2.84441 3.25511 3.29516 3.37103 3.39437 3.87190 4.04864 4.33916 4.43380 4.63867 4.80728 4.95958 5.05459 5.27886 5.32618 5.50907 5.63997 5.83453 6.10571 6.33383 6.62683 6.79702 6.88061 7.03475 7.60964 7.63527 7.92993 8.37573 8.67913 9.04934 9.57931 11.09496 Molecular weight = 245.10amu Principal moments of inertia in cm(-1) A = 0.040198 B = 0.004121 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.390143 B = 6793.528537 C = 7188.509286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.079 0.921 9 C 0.163 3.837 10 N -0.677 5.677 11 C 0.130 3.870 12 C -0.216 4.216 13 C 0.066 3.934 14 N -0.307 5.307 15 N -0.387 5.387 16 C 0.095 3.905 17 C 0.253 3.747 18 F -0.200 7.200 19 F -0.195 7.195 20 C 0.079 3.921 21 H 0.263 0.737 22 H -0.020 1.020 23 H 0.026 0.974 24 H 0.336 0.664 25 H 0.028 0.972 26 H 0.070 0.930 27 H 0.184 0.816 28 H 0.112 0.888 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.044 -13.400 2.008 21.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.554 4.554 8 H 0.097 0.903 9 C 0.035 3.965 10 N -0.307 5.307 11 C 0.000 4.000 12 C -0.227 4.227 13 C -0.121 4.121 14 N -0.128 5.128 15 N -0.170 5.170 16 C -0.029 4.029 17 C 0.199 3.801 18 F -0.181 7.181 19 F -0.176 7.176 20 C -0.065 4.065 21 H 0.073 0.927 22 H -0.003 1.003 23 H 0.044 0.956 24 H 0.153 0.847 25 H 0.046 0.954 26 H 0.088 0.912 27 H 0.201 0.799 28 H 0.131 0.869 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 17.222 -14.628 2.465 22.731 hybrid contribution 0.159 1.921 -0.508 1.993 sum 17.382 -12.708 1.957 21.621 Atomic orbital electron populations 1.69904 1.06191 1.26853 1.51068 1.24915 0.94745 0.98959 0.94775 0.86807 0.80312 0.83830 0.78430 1.20357 1.21215 1.19138 1.21079 0.89017 0.94804 1.50474 0.90327 1.20020 0.96617 0.85072 0.94748 1.60546 1.04079 1.16423 1.49699 1.20181 0.90392 0.89284 1.00179 1.20197 1.11770 0.99213 0.91496 1.23860 0.97649 0.90531 1.00098 1.77225 1.25647 1.21881 0.88023 1.48085 1.54496 1.09622 1.04814 1.22529 1.00683 0.84400 0.95289 1.22139 0.77434 0.83553 0.97013 1.93004 1.89746 1.54921 1.80444 1.93058 1.35321 1.94103 1.95118 1.22354 0.98876 0.84746 1.00541 0.92672 1.00268 0.95575 0.84662 0.95364 0.91208 0.79923 0.86949 0.86369 0.86011 0.80680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.52 -14.82 9.87 -34.44 -0.34 -15.16 16 8 H 0.08 2.47 8.06 -52.49 -0.42 2.04 16 9 C 0.16 3.93 4.51 -4.98 -0.02 3.91 16 10 N -0.68 -13.88 6.48 -116.34 -0.75 -14.63 16 11 C 0.13 2.10 6.17 -4.97 -0.03 2.07 16 12 C -0.22 -3.07 5.61 -105.05 -0.59 -3.66 16 13 C 0.07 0.88 11.96 -17.36 -0.21 0.67 16 14 N -0.31 -4.10 12.34 30.62 0.38 -3.72 16 15 N -0.39 -4.52 3.66 -61.37 -0.22 -4.74 16 16 C 0.09 0.75 6.70 -4.04 -0.03 0.72 16 17 C 0.25 2.31 5.43 37.16 0.20 2.51 16 18 F -0.20 -1.85 17.34 2.25 0.04 -1.81 16 19 F -0.19 -2.48 17.32 2.25 0.04 -2.44 16 20 C 0.08 1.00 11.36 -17.22 -0.20 0.80 16 21 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 22 H -0.02 -0.48 7.57 -51.93 -0.39 -0.87 16 23 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 24 H 0.34 6.83 8.71 -39.30 -0.34 6.49 16 25 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.18 2.01 8.06 -52.49 -0.42 1.58 16 28 H 0.11 0.63 8.14 -51.92 -0.42 0.21 16 29 H 0.12 0.70 8.07 -51.93 -0.42 0.29 16 30 H 0.12 1.03 8.05 -51.93 -0.42 0.61 16 31 H 0.18 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 282.91 15.07 4.26 4.26 Total: -1.00 -33.22 282.91 -5.11 -38.33 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -3.65 Total: 1.25 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -1.31 Total: -6.26 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: 0.17 Total: -50.17 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.08 Total: -4.25 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -33.22 -5.11 -38.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308825431.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.945 kcal (2) G-P(sol) polarization free energy of solvation -33.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds