Wall clock time and date at job start Sun Mar 29 2020 23:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 119.99827 * 2 1 4 4 H 1.48499 * 109.47110 * 269.99991 * 3 2 1 5 5 H 1.48503 * 109.47516 * 29.99832 * 3 2 1 6 6 H 1.48506 * 109.47211 * 150.00279 * 3 2 1 7 7 C 1.37872 * 120.00476 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00584 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99772 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47041 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47061 * 179.97438 * 10 9 7 12 12 C 1.37765 * 120.00255 * 180.02562 * 11 10 9 13 13 N 1.32581 * 120.89083 * 0.02562 * 12 11 10 14 14 C 1.32301 * 121.45080 * 179.97438 * 13 12 11 15 15 N 1.31216 * 122.96831 * 359.97438 * 14 13 12 16 16 C 1.34009 * 120.58800 * 359.97438 * 15 14 13 17 17 N 1.33531 * 121.81790 * 179.97438 * 16 15 14 18 18 C 1.31543 * 119.58903 * 180.02562 * 17 16 15 19 19 C 1.39559 * 120.74153 * 0.02562 * 18 17 16 20 20 N 1.31513 * 120.64255 * 0.25402 * 19 18 17 21 21 C 1.33105 * 119.57964 * 359.49334 * 20 19 18 22 22 H 0.97004 * 120.00513 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47226 * 59.99336 * 9 7 2 24 24 H 1.09004 * 109.46593 * 299.99576 * 9 7 2 25 25 H 1.09008 * 109.47008 * 60.00171 * 10 9 7 26 26 H 1.08996 * 109.47275 * 300.00157 * 10 9 7 27 27 H 0.97001 * 119.99772 * 0.02562 * 11 10 9 28 28 H 1.08001 * 118.51253 * 180.02562 * 14 13 12 29 29 H 1.07997 * 119.63103 * 179.97438 * 18 17 16 30 30 H 1.08002 * 119.67390 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.2017 -6.1238 0.0018 13 7 3.5274 -6.1444 0.0024 14 6 4.2001 -7.2837 0.0035 15 7 3.6152 -8.4583 0.0046 16 6 2.2785 -8.5545 0.0052 17 7 1.6578 -9.7367 0.0058 18 6 0.3431 -9.7801 0.0058 19 6 -0.4094 -8.6047 0.0046 20 7 0.1820 -7.4301 -0.0015 21 6 1.5114 -7.3639 0.0036 22 1 -0.4851 0.8400 0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8904 25 1 2.8720 -3.6042 0.8906 26 1 2.8720 -3.6042 -0.8894 27 1 0.5429 -4.9308 0.0011 28 1 5.2794 -7.2451 0.0044 29 1 -0.1597 -10.7359 0.0059 30 1 -1.4880 -8.6604 0.0043 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309511270.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:44:56 Heat of formation + Delta-G solvation = 88.915376 kcal Electronic energy + Delta-G solvation = -16367.880765 eV Core-core repulsion = 13584.401780 eV Total energy + Delta-G solvation = -2783.478984 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.097 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.85124 -39.04830 -36.86264 -34.65001 -33.25226 -32.33723 -31.24201 -29.21239 -26.11007 -25.37070 -24.43191 -22.46308 -21.29793 -19.85323 -18.31945 -18.06284 -16.85937 -16.17704 -15.90048 -15.39397 -14.66966 -14.35822 -14.34181 -14.01740 -13.84057 -13.22096 -12.38596 -12.35441 -11.88915 -11.44238 -11.24984 -11.21161 -10.78091 -10.70459 -10.03223 -9.93639 -9.74879 -9.69701 -9.41384 -8.65555 -8.52246 -7.91716 -6.16904 -4.20938 0.15412 0.33652 1.89889 2.86101 3.09766 3.24831 3.31631 3.35485 3.50234 3.79354 3.96212 4.09182 4.31935 4.37601 4.71782 4.84983 4.94278 5.13397 5.20424 5.79091 5.99457 6.14436 6.24750 6.55031 6.56191 6.92328 7.21197 7.36230 7.45857 7.46955 7.73125 7.81118 8.16475 8.35581 8.84495 9.44575 10.94627 Molecular weight = 245.10amu Principal moments of inertia in cm(-1) A = 0.042631 B = 0.004538 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.639998 B = 6169.097779 C = 6805.290500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.061 0.939 9 C 0.010 3.990 10 C 0.118 3.882 11 N -0.650 5.650 12 C 0.500 3.500 13 N -0.594 5.594 14 C 0.385 3.615 15 N -0.563 5.563 16 C 0.331 3.669 17 N -0.437 5.437 18 C 0.126 3.874 19 C 0.030 3.970 20 N -0.385 5.385 21 C -0.068 4.068 22 H 0.263 0.737 23 H 0.024 0.976 24 H 0.024 0.976 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.421 0.579 28 H 0.204 0.796 29 H 0.180 0.820 30 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.048 -15.869 0.019 15.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.080 0.920 9 C -0.028 4.028 10 C -0.003 4.003 11 N -0.274 5.274 12 C 0.239 3.761 13 N -0.326 5.326 14 C 0.092 3.908 15 N -0.287 5.287 16 C 0.084 3.916 17 N -0.154 5.154 18 C -0.052 4.052 19 C -0.145 4.145 20 N -0.101 5.101 21 C -0.207 4.207 22 H 0.073 0.927 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.260 0.740 28 H 0.220 0.780 29 H 0.197 0.803 30 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 1.136 -15.427 0.016 15.469 hybrid contribution -0.975 0.860 -0.010 1.300 sum 0.161 -14.567 0.006 14.568 Atomic orbital electron populations 1.69949 1.06147 1.27052 1.49939 1.24995 0.94894 0.99499 0.94815 0.86487 0.79822 0.82855 0.78250 1.20506 1.21129 1.19650 1.20976 0.93248 0.90070 1.51917 0.92046 1.19374 0.94219 0.91017 0.98144 1.22087 0.96240 0.80101 1.01882 1.45458 1.10319 1.03553 1.68085 1.18782 0.88386 0.85012 0.83959 1.68173 1.05180 1.31638 1.27576 1.24799 1.00822 0.81000 0.84165 1.68358 1.07539 1.28433 1.24367 1.19891 0.91300 0.88217 0.92152 1.68394 1.09881 1.25380 1.11724 1.24235 0.89721 1.00548 0.90662 1.23907 1.02206 0.88189 1.00178 1.68207 1.08489 1.28613 1.04804 1.20627 0.92378 0.95916 1.11734 0.92720 0.95779 0.95758 0.91340 0.91340 0.74048 0.77995 0.80299 0.80452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 2 C 0.06 1.65 5.46 -17.83 -0.10 1.55 16 3 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.52 -13.97 9.11 -34.44 -0.31 -14.28 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.01 0.24 5.09 -27.88 -0.14 0.09 16 10 C 0.12 2.33 5.66 -4.04 -0.02 2.31 16 11 N -0.65 -11.33 5.66 -59.92 -0.34 -11.66 16 12 C 0.50 8.50 7.58 -154.98 -1.17 7.32 16 13 N -0.59 -9.79 9.67 -13.50 -0.13 -9.92 16 14 C 0.38 5.50 12.22 -92.21 -1.13 4.37 16 15 N -0.56 -9.04 10.50 -14.25 -0.15 -9.19 16 16 C 0.33 5.37 7.65 -157.73 -1.21 4.17 16 17 N -0.44 -6.25 10.56 -12.44 -0.13 -6.39 16 18 C 0.13 1.23 11.21 -17.18 -0.19 1.04 16 19 C 0.03 0.30 11.21 -17.20 -0.19 0.10 16 20 N -0.39 -5.44 9.85 -10.62 -0.10 -5.54 16 21 C -0.07 -1.09 6.63 -84.61 -0.56 -1.65 16 22 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 23 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 1.37 8.14 -51.92 -0.42 0.94 16 26 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.42 7.02 7.95 -40.82 -0.32 6.69 16 28 H 0.20 2.01 8.06 -52.49 -0.42 1.59 16 29 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 30 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 272.95 15.07 4.11 4.11 Total: -1.00 -32.12 272.95 -8.88 -41.00 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -2.83 Total: 1.62 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: -5.03 Total: 5.02 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: -0.12 Total: -67.55 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.12 -8.88 -41.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309511270.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.914 kcal (2) G-P(sol) polarization free energy of solvation -32.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds