Wall clock time and date at job start Sun Mar 29 2020 23:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00101 * 2 1 4 4 H 1.48500 * 109.47207 * 239.99832 * 3 2 1 5 5 H 1.48501 * 109.47123 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47065 * 119.99937 * 3 2 1 7 7 C 1.37880 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99598 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00055 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46897 * 179.97438 * 9 7 2 11 11 C 1.38999 * 119.99958 * 179.97438 * 10 9 7 12 12 C 1.39276 * 120.05128 * 359.97438 * 11 10 9 13 13 N 1.31988 * 120.03412 * 180.02562 * 12 11 10 14 14 C 1.32133 * 120.15229 * 359.97438 * 13 12 11 15 15 C 1.38910 * 120.10695 * 359.97438 * 14 13 12 16 16 N 1.39807 * 120.02086 * 180.02562 * 15 14 13 17 17 C 1.35848 * 126.10630 * 179.97438 * 16 15 14 18 18 C 1.35281 * 107.61599 * 179.97438 * 17 16 15 19 19 C 1.39956 * 107.96808 * 0.02562 * 18 17 16 20 20 N 1.30820 * 108.36880 * 359.71413 * 19 18 17 21 21 N 1.32657 * 120.05091 * 180.02562 * 11 10 9 22 22 H 0.96999 * 119.99978 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47295 * 60.00425 * 9 7 2 24 24 H 1.08999 * 109.47424 * 299.99655 * 9 7 2 25 25 H 0.96997 * 120.00143 * 0.02562 * 10 9 7 26 26 H 1.07995 * 119.98187 * 0.03664 * 12 11 10 27 27 H 1.08001 * 119.94909 * 179.97438 * 14 13 12 28 28 H 1.07999 * 126.19036 * 0.02562 * 17 16 15 29 29 H 1.07999 * 126.01213 * 179.97438 * 18 17 16 30 30 H 1.07999 * 125.81416 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7397 -4.9231 0.0011 12 6 0.3706 -5.1789 0.0022 13 7 -0.0690 -6.4234 0.0032 14 6 0.7872 -7.4297 0.0027 15 6 2.1540 -7.1817 0.0005 16 7 3.0584 -8.2478 -0.0006 17 6 4.4132 -8.1483 -0.0031 18 6 4.9160 -9.4042 -0.0028 19 6 3.8405 -10.2998 -0.0005 20 7 2.7293 -9.6096 0.0067 21 7 2.6008 -5.9322 0.0016 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 3.1566 -3.4354 0.0009 26 1 -0.3317 -4.3584 0.0020 27 1 0.4239 -8.4468 0.0039 28 1 4.9854 -7.2323 -0.0043 29 1 5.9630 -9.6691 -0.0048 30 1 3.9153 -11.3772 -0.0001 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309528703.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:46:25 Heat of formation + Delta-G solvation = 136.661387 kcal Electronic energy + Delta-G solvation = -16272.498174 eV Core-core repulsion = 13491.089612 eV Total energy + Delta-G solvation = -2781.408562 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.097 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.58714 -40.35520 -35.95263 -34.40768 -33.13253 -31.73647 -30.42500 -28.89250 -27.02002 -24.68953 -23.62143 -22.54057 -20.96629 -20.70969 -18.18981 -17.83772 -16.53986 -16.22151 -15.65460 -15.54715 -14.85386 -14.59461 -14.28179 -13.69360 -13.56642 -12.88162 -12.80045 -12.68290 -12.10704 -11.28278 -11.23846 -11.10481 -11.07179 -10.93457 -10.52648 -10.38053 -9.65383 -9.36547 -8.96828 -8.85504 -8.52908 -7.22932 -6.35982 -4.43123 0.75843 1.60698 2.05202 2.17722 2.67247 3.16696 3.22076 3.23087 3.66058 4.11874 4.21384 4.39129 4.66028 4.84550 4.90704 5.01937 5.02500 5.42284 5.49592 5.63780 5.76554 5.82919 6.39677 6.44931 6.77279 7.01483 7.11308 7.11962 7.39843 7.58593 7.70424 7.93158 8.15076 8.33549 8.66127 9.24147 10.74218 Molecular weight = 245.10amu Principal moments of inertia in cm(-1) A = 0.045241 B = 0.004399 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.762512 B = 6363.849269 C = 6967.465403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.248 3.752 10 N -0.682 5.682 11 C 0.398 3.602 12 C -0.020 4.020 13 N -0.382 5.382 14 C -0.035 4.035 15 C 0.368 3.632 16 N -0.318 5.318 17 C 0.082 3.918 18 C -0.272 4.272 19 C 0.059 3.941 20 N -0.282 5.282 21 N -0.548 5.548 22 H 0.269 0.731 23 H 0.032 0.968 24 H 0.032 0.968 25 H 0.401 0.599 26 H 0.177 0.823 27 H 0.168 0.832 28 H 0.181 0.819 29 H 0.154 0.846 30 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.717 -14.038 -0.015 15.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.584 4.584 8 H 0.083 0.917 9 C 0.127 3.873 10 N -0.308 5.308 11 C 0.153 3.847 12 C -0.191 4.191 13 N -0.094 5.094 14 C -0.197 4.197 15 C 0.137 3.863 16 N -0.096 5.096 17 C -0.060 4.060 18 C -0.301 4.301 19 C -0.130 4.130 20 N -0.101 5.101 21 N -0.278 5.278 22 H 0.079 0.921 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.236 0.764 26 H 0.194 0.806 27 H 0.185 0.815 28 H 0.198 0.802 29 H 0.172 0.828 30 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 5.050 -13.671 -0.005 14.574 hybrid contribution 1.933 1.063 -0.004 2.206 sum 6.983 -12.608 -0.009 14.413 Atomic orbital electron populations 1.69914 1.06088 1.27898 1.48350 1.24911 0.94982 0.99544 0.94270 0.86403 0.79423 0.81876 0.78875 1.19943 1.20918 1.19947 1.21060 0.93491 0.89865 1.54017 0.91653 1.19421 0.88375 0.81849 0.97624 1.45596 1.11259 1.00707 1.73206 1.19247 0.89616 0.86272 0.89573 1.23281 0.93432 0.95203 1.07215 1.68264 1.36840 0.99066 1.05259 1.22682 0.87390 0.99941 1.09708 1.18354 0.87402 0.84520 0.96021 1.45803 1.04107 1.03895 1.55781 1.22979 0.83907 1.00617 0.98529 1.21624 1.00676 0.91349 1.16402 1.24130 0.89864 1.00658 0.98323 1.77457 1.23629 0.84546 1.24447 1.66960 1.38886 0.97403 1.24542 0.92093 0.95024 0.95017 0.76357 0.80650 0.81484 0.80162 0.82804 0.79142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.98 13.29 55.43 0.74 -23.25 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 19.87 29.54 -169.99 -5.02 14.85 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.55 -13.76 9.28 -34.44 -0.32 -14.08 16 8 H 0.07 1.58 7.60 -52.48 -0.40 1.18 16 9 C 0.25 5.71 4.65 -5.20 -0.02 5.69 16 10 N -0.68 -13.54 5.72 -61.50 -0.35 -13.89 16 11 C 0.40 7.60 7.66 -154.75 -1.19 6.41 16 12 C -0.02 -0.37 10.48 -17.10 -0.18 -0.55 16 13 N -0.38 -6.97 10.48 -12.73 -0.13 -7.10 16 14 C -0.03 -0.59 10.83 -17.17 -0.19 -0.78 16 15 C 0.37 6.39 7.55 -154.06 -1.16 5.23 16 16 N -0.32 -4.91 3.81 -12.03 -0.05 -4.96 16 17 C 0.08 1.06 11.12 -16.83 -0.19 0.88 16 18 C -0.27 -2.85 10.80 -39.99 -0.43 -3.28 16 19 C 0.06 0.63 12.02 -17.34 -0.21 0.42 16 20 N -0.28 -4.00 11.85 30.64 0.36 -3.64 16 21 N -0.55 -9.98 10.06 -11.28 -0.11 -10.10 16 22 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 23 H 0.03 0.77 7.94 -51.93 -0.41 0.36 16 24 H 0.03 0.77 7.94 -51.93 -0.41 0.36 16 25 H 0.40 7.58 8.45 -40.82 -0.34 7.23 16 26 H 0.18 3.22 6.71 -52.49 -0.35 2.87 16 27 H 0.17 2.58 7.69 -52.49 -0.40 2.18 16 28 H 0.18 2.10 8.06 -52.49 -0.42 1.68 16 29 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.19 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 274.72 15.07 4.14 4.14 Total: -1.00 -28.10 274.72 -7.14 -35.24 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -2.73 Total: 7.12 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -3.98 Total: 1.58 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: 0.46 Total: -62.93 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.10 -7.14 -35.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309528703.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.901 kcal (2) G-P(sol) polarization free energy of solvation -28.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds