Wall clock time and date at job start Sun Mar 29 2020 23:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00101 * 2 1 4 4 H 1.48500 * 109.47207 * 239.99832 * 3 2 1 5 5 H 1.48501 * 109.47123 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47065 * 119.99937 * 3 2 1 7 7 C 1.37880 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99598 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00055 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46897 * 179.97438 * 9 7 2 11 11 C 1.38999 * 119.99958 * 179.97438 * 10 9 7 12 12 C 1.39276 * 120.05128 * 359.97438 * 11 10 9 13 13 N 1.31988 * 120.03412 * 180.02562 * 12 11 10 14 14 C 1.32133 * 120.15229 * 359.97438 * 13 12 11 15 15 C 1.38910 * 120.10695 * 359.97438 * 14 13 12 16 16 N 1.39807 * 120.02086 * 180.02562 * 15 14 13 17 17 C 1.35848 * 126.10630 * 179.97438 * 16 15 14 18 18 C 1.35281 * 107.61599 * 179.97438 * 17 16 15 19 19 C 1.39956 * 107.96808 * 0.02562 * 18 17 16 20 20 N 1.30820 * 108.36880 * 359.71413 * 19 18 17 21 21 N 1.32657 * 120.05091 * 180.02562 * 11 10 9 22 22 H 0.96999 * 119.99978 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47295 * 60.00425 * 9 7 2 24 24 H 1.08999 * 109.47424 * 299.99655 * 9 7 2 25 25 H 0.96997 * 120.00143 * 0.02562 * 10 9 7 26 26 H 1.07995 * 119.98187 * 0.03664 * 12 11 10 27 27 H 1.08001 * 119.94909 * 179.97438 * 14 13 12 28 28 H 1.07999 * 126.19036 * 0.02562 * 17 16 15 29 29 H 1.07999 * 126.01213 * 179.97438 * 18 17 16 30 30 H 1.07999 * 125.81416 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7397 -4.9231 0.0011 12 6 0.3706 -5.1789 0.0022 13 7 -0.0690 -6.4234 0.0032 14 6 0.7872 -7.4297 0.0027 15 6 2.1540 -7.1817 0.0005 16 7 3.0584 -8.2478 -0.0006 17 6 4.4132 -8.1483 -0.0031 18 6 4.9160 -9.4042 -0.0028 19 6 3.8405 -10.2998 -0.0005 20 7 2.7293 -9.6096 0.0067 21 7 2.6008 -5.9322 0.0016 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 3.1566 -3.4354 0.0009 26 1 -0.3317 -4.3584 0.0020 27 1 0.4239 -8.4468 0.0039 28 1 4.9854 -7.2323 -0.0043 29 1 5.9630 -9.6691 -0.0048 30 1 3.9153 -11.3772 -0.0001 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309528703.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:46:25 Heat of formation + Delta-G solvation = 119.052075 kcal Electronic energy + Delta-G solvation = -16273.261771 eV Core-core repulsion = 13491.089612 eV Total energy + Delta-G solvation = -2782.172159 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.097 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.71448 -41.63562 -37.54934 -35.74401 -34.91771 -33.16515 -31.42229 -30.26408 -28.76740 -26.04100 -25.18353 -24.06494 -22.02958 -21.87416 -19.49890 -19.29998 -18.14967 -17.71004 -17.02599 -16.89950 -16.64884 -15.61491 -15.61021 -15.24223 -14.55245 -14.47936 -14.28029 -13.83074 -13.72402 -12.91587 -12.83415 -12.71648 -12.58584 -12.20999 -11.91937 -11.88651 -11.54013 -10.75528 -10.41898 -10.40329 -9.74882 -8.73815 -8.32082 -6.45684 -0.51450 0.15358 0.90220 1.05547 1.44363 1.45629 1.53917 1.83899 2.14039 2.41658 2.69730 3.04617 3.20958 3.28962 3.59442 3.69763 4.05200 4.15422 4.39289 4.52200 4.70699 4.87241 5.04120 5.14642 5.20880 5.42596 5.54040 5.76473 5.79654 5.90311 6.35013 6.46899 6.58065 6.69650 6.94425 7.26379 8.78768 Molecular weight = 245.10amu Principal moments of inertia in cm(-1) A = 0.045241 B = 0.004399 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.762512 B = 6363.849269 C = 6967.465403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.017 3.983 3 Si 0.974 3.026 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.561 4.561 8 H 0.073 0.927 9 C 0.266 3.734 10 N -0.684 5.684 11 C 0.391 3.609 12 C -0.038 4.038 13 N -0.387 5.387 14 C -0.032 4.032 15 C 0.373 3.627 16 N -0.339 5.339 17 C 0.055 3.945 18 C -0.250 4.250 19 C 0.074 3.926 20 N -0.315 5.315 21 N -0.548 5.548 22 H 0.271 0.729 23 H 0.013 0.987 24 H 0.013 0.987 25 H 0.405 0.595 26 H 0.171 0.829 27 H 0.185 0.815 28 H 0.186 0.814 29 H 0.191 0.809 30 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.775 -15.663 -0.017 17.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.184 4.184 3 Si 0.798 3.202 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.599 4.599 8 H 0.091 0.909 9 C 0.144 3.856 10 N -0.311 5.311 11 C 0.147 3.853 12 C -0.207 4.207 13 N -0.100 5.100 14 C -0.196 4.196 15 C 0.140 3.860 16 N -0.118 5.118 17 C -0.085 4.085 18 C -0.278 4.278 19 C -0.115 4.115 20 N -0.134 5.134 21 N -0.278 5.278 22 H 0.080 0.920 23 H 0.031 0.969 24 H 0.031 0.969 25 H 0.242 0.758 26 H 0.188 0.812 27 H 0.202 0.798 28 H 0.203 0.797 29 H 0.208 0.792 30 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 7.139 -15.320 -0.008 16.902 hybrid contribution 1.400 1.245 -0.003 1.874 sum 8.539 -14.075 -0.011 16.463 Atomic orbital electron populations 1.70032 1.07601 1.28755 1.49461 1.25793 0.95757 1.03040 0.93843 0.85358 0.78123 0.77544 0.79153 1.19217 1.20798 1.19230 1.21457 0.94112 0.90791 1.53513 0.90893 1.18963 0.88314 0.82446 0.95849 1.45199 1.10786 1.00462 1.74666 1.19218 0.89871 0.86174 0.90026 1.23186 0.93375 0.95436 1.08741 1.68247 1.37358 0.99062 1.05319 1.22986 0.87525 1.00289 1.08803 1.18524 0.88175 0.84746 0.94601 1.45867 1.04516 1.03853 1.57600 1.23392 0.83203 1.02235 0.99691 1.22106 1.02325 0.90009 1.13362 1.24989 0.88821 1.02531 0.95158 1.77475 1.25583 0.84107 1.26195 1.66974 1.38667 0.97677 1.24499 0.92028 0.96877 0.96870 0.75850 0.81204 0.79821 0.79711 0.79193 0.74789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.83 13.29 21.45 0.28 -50.55 16 2 C 0.02 0.87 5.46 84.66 0.46 1.33 16 3 Si 0.97 40.62 29.54 68.60 2.03 42.65 16 4 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 5 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.56 -28.61 9.28 25.60 0.24 -28.37 16 8 H 0.07 3.52 7.60 -2.91 -0.02 3.50 16 9 C 0.27 12.73 4.65 85.63 0.40 13.13 16 10 N -0.68 -27.89 5.72 -348.49 -1.99 -29.88 16 11 C 0.39 15.28 7.66 133.02 1.02 16.30 16 12 C -0.04 -1.46 10.48 84.92 0.89 -0.56 16 13 N -0.39 -14.34 10.48 -194.18 -2.04 -16.37 16 14 C -0.03 -1.10 10.83 84.81 0.92 -0.18 16 15 C 0.37 12.77 7.55 132.64 1.00 13.78 16 16 N -0.34 -10.03 3.81 -191.98 -0.73 -10.76 16 17 C 0.05 1.31 11.12 83.39 0.93 2.23 16 18 C -0.25 -4.26 10.80 22.00 0.24 -4.02 16 19 C 0.07 1.28 12.02 85.26 1.02 2.31 16 20 N -0.32 -8.21 11.85 -56.98 -0.68 -8.89 16 21 N -0.55 -20.04 10.06 -189.61 -1.91 -21.94 16 22 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 23 H 0.01 0.68 7.94 -2.39 -0.02 0.66 16 24 H 0.01 0.68 7.94 -2.39 -0.02 0.67 16 25 H 0.41 15.55 8.45 -92.71 -0.78 14.77 16 26 H 0.17 6.65 6.71 -2.91 -0.02 6.63 16 27 H 0.18 5.53 7.69 -2.91 -0.02 5.50 16 28 H 0.19 4.06 8.06 -2.91 -0.02 4.04 16 29 H 0.19 1.81 8.06 -2.91 -0.02 1.78 16 30 H 0.24 1.77 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -60.72 274.72 2.48 -58.24 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.40 Total: 21.58 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 7.12 Total: 15.94 kcal Atomic # 7 Polarization: -131.34 SS G_CDS: -7.06 Total: -138.39 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -60.72 2.48 -58.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309528703.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.289 kcal (2) G-P(sol) polarization free energy of solvation -60.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds