Wall clock time and date at job start Sun Mar 29 2020 22:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00194 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00241 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 H 1.09002 * 110.01442 * 326.39011 * 14 13 11 16 16 C 1.54265 * 110.03505 * 87.82597 * 14 13 11 17 17 C 1.54892 * 104.19262 * 95.67432 * 16 14 13 18 18 C 1.54887 * 102.74888 * 37.94521 * 17 16 14 19 19 C 1.53878 * 110.03501 * 204.99877 * 14 13 11 20 20 H 1.09000 * 110.02713 * 359.97438 * 19 14 13 21 21 O 1.42896 * 110.03289 * 121.42572 * 19 14 13 22 22 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 24 24 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 25 25 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 26 26 H 1.08999 * 110.49118 * 214.35639 * 16 14 13 27 27 H 1.08994 * 110.48661 * 337.00455 * 16 14 13 28 28 H 1.08996 * 110.75728 * 279.62954 * 17 16 14 29 29 H 1.09000 * 110.91410 * 156.32981 * 17 16 14 30 30 H 1.08996 * 110.49245 * 203.37445 * 18 17 16 31 31 H 1.09004 * 110.59951 * 80.79025 * 18 17 16 32 32 H 0.96695 * 113.99998 * 179.97438 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2124 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 1 1.4003 -7.7682 0.5325 16 6 2.0941 -8.1833 -1.4844 17 6 3.3872 -8.9535 -1.8501 18 6 3.7328 -9.6872 -0.5305 19 6 3.3721 -8.6713 0.5729 20 1 4.2601 -8.1146 0.8722 21 8 2.8155 -9.3501 1.7005 22 1 -0.4849 0.8401 0.0004 23 1 3.1244 -3.7267 -0.9039 24 1 3.1244 -3.7361 0.8761 25 1 3.8007 -6.1835 -0.0260 26 1 1.2288 -8.8443 -1.5360 27 1 1.9608 -7.3266 -2.1449 28 1 4.1830 -8.2624 -2.1277 29 1 3.2010 -9.6680 -2.6519 30 1 4.7952 -9.9280 -0.4948 31 1 3.1339 -10.5920 -0.4266 32 1 3.4243 -9.9685 2.1270 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323500785.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:34 Heat of formation + Delta-G solvation = -100.062592 kcal Electronic energy + Delta-G solvation = -15393.579239 eV Core-core repulsion = 12672.764004 eV Total energy + Delta-G solvation = -2720.815235 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.88809 -38.12835 -35.40607 -33.30555 -32.41716 -29.68157 -27.96614 -26.90888 -25.44353 -21.42403 -20.72436 -20.01203 -17.92595 -17.67126 -16.46934 -15.99129 -15.34310 -14.81074 -14.76648 -14.50361 -14.05602 -13.85980 -13.09848 -12.84871 -12.70266 -12.28948 -12.15944 -11.45221 -11.29676 -11.06238 -11.01099 -10.93873 -10.88451 -10.73875 -10.26025 -9.79314 -9.36499 -9.06793 -8.88100 -8.21552 -6.48577 -6.20762 -3.91086 3.00384 3.11218 3.22284 3.28241 3.32697 3.65294 4.03659 4.21267 4.30098 4.47846 4.72158 5.02165 5.14010 5.14624 5.26402 5.30086 5.39363 5.49474 5.57709 5.64547 5.74912 5.90416 5.98457 6.05923 6.09329 6.15297 6.69666 7.40078 7.60801 7.72099 8.36396 8.64110 9.24667 10.86759 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.053260 B = 0.004311 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.592082 B = 6493.813421 C = 6531.006069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.533 3.467 12 O -0.514 6.514 13 N -0.731 5.731 14 C 0.146 3.854 15 H 0.102 0.898 16 C -0.132 4.132 17 C -0.123 4.123 18 C -0.157 4.157 19 C 0.095 3.905 20 H 0.064 0.936 21 O -0.560 6.560 22 H 0.268 0.732 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.396 0.604 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.844 -17.922 -1.135 20.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.388 6.388 13 N -0.386 5.386 14 C 0.040 3.960 15 H 0.120 0.880 16 C -0.170 4.170 17 C -0.161 4.161 18 C -0.195 4.195 19 C 0.035 3.965 20 H 0.082 0.918 21 O -0.365 6.365 22 H 0.078 0.922 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.230 0.770 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 8.139 -17.781 -1.283 19.598 hybrid contribution 3.009 1.013 0.138 3.178 sum 11.148 -16.769 -1.145 20.169 Atomic orbital electron populations 1.70034 1.05957 1.27331 1.46957 1.24995 0.95019 0.99025 0.94544 0.86114 0.79569 0.81892 0.77900 1.19635 1.20564 1.20564 1.22915 0.94943 0.91672 1.58825 0.90890 1.85417 1.04917 0.96303 1.96700 1.23532 1.06576 0.95348 1.04906 1.20314 0.86574 0.86218 0.74973 1.90705 1.15332 1.85511 1.47249 1.46065 1.09733 1.04982 1.77838 1.21293 0.98027 0.80521 0.96119 0.87965 1.22759 0.97797 1.00600 0.95876 1.22451 0.97933 0.98984 0.96683 1.23110 1.01530 0.99146 0.95680 1.22691 0.95220 0.92659 0.85933 0.91850 1.86583 1.43897 1.60549 1.45488 0.92240 0.89219 0.89238 0.77016 0.90534 0.90444 0.91249 0.91162 0.91226 0.90285 0.77503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.54 -15.36 9.50 30.94 0.29 -15.06 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 11 C 0.53 10.19 7.84 -10.99 -0.09 10.10 16 12 O -0.51 -11.99 15.52 5.56 0.09 -11.90 16 13 N -0.73 -10.15 5.03 -52.72 -0.27 -10.41 16 14 C 0.15 1.89 3.06 -66.81 -0.20 1.69 16 15 H 0.10 1.67 7.38 -51.93 -0.38 1.28 16 16 C -0.13 -1.51 6.54 -25.07 -0.16 -1.68 16 17 C -0.12 -1.03 6.91 -24.74 -0.17 -1.20 16 18 C -0.16 -1.17 6.56 -25.07 -0.16 -1.34 16 19 C 0.09 0.91 4.03 -25.61 -0.10 0.81 16 20 H 0.06 0.53 7.62 -51.93 -0.40 0.14 16 21 O -0.56 -5.77 13.22 -35.23 -0.47 -6.23 16 22 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16 23 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 24 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 25 H 0.40 4.22 8.32 -40.82 -0.34 3.88 16 26 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 32 H 0.38 2.04 9.11 45.56 0.42 2.46 16 LS Contribution 288.02 15.07 4.34 4.34 Total: -1.00 -35.23 288.02 -6.90 -42.13 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -3.62 Total: 2.65 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -0.47 Total: -7.58 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.47 Total: -36.01 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.38 Total: -18.14 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -35.23 -6.90 -42.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323500785.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.933 kcal (2) G-P(sol) polarization free energy of solvation -35.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds