Wall clock time and date at job start Sun Mar 29 2020 22:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.46807 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46906 * 120.00270 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00008 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99910 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99766 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99894 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46896 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00232 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99423 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99634 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.52216 * 324.87778 * 14 13 11 16 16 C 1.53179 * 109.52212 * 204.68454 * 14 13 11 17 17 C 1.53175 * 109.03373 * 183.11485 * 16 14 13 18 18 C 1.53096 * 109.16442 * 56.98537 * 17 16 14 19 19 O 1.42903 * 109.41150 * 302.38523 * 18 17 16 20 20 C 1.42906 * 114.09759 * 61.15918 * 19 18 17 21 21 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46895 * 300.00170 * 10 9 7 23 23 H 1.09003 * 109.47006 * 60.00004 * 10 9 7 24 24 H 0.96994 * 120.00530 * 359.97438 * 13 11 10 25 25 H 1.09003 * 109.54149 * 302.98224 * 16 14 13 26 26 H 1.08997 * 109.54074 * 63.24734 * 16 14 13 27 27 H 1.08997 * 109.52667 * 297.07529 * 17 16 14 28 28 H 1.08999 * 109.52228 * 176.88760 * 17 16 14 29 29 H 1.09002 * 109.47723 * 182.41152 * 18 17 16 30 30 H 1.08990 * 109.49148 * 62.37696 * 18 17 16 31 31 H 1.09001 * 109.48443 * 178.85404 * 20 19 18 32 32 H 1.08999 * 109.47597 * 58.82214 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1041 1.6963 1.2125 6 1 3.1041 1.6964 -1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3431 0.0003 14 6 2.3303 -7.7151 0.0003 15 1 1.4155 -7.7615 0.5910 16 6 3.3791 -8.6545 0.6037 17 6 2.8629 -10.0946 0.5270 18 6 2.5458 -10.4379 -0.9309 19 8 1.5877 -9.5079 -1.4402 20 6 2.0337 -8.1502 -1.4372 21 1 -0.4850 0.8401 0.0004 22 1 3.1244 -3.7314 -0.8895 23 1 3.1245 -3.7314 0.8906 24 1 3.8008 -6.1836 0.0006 25 1 4.3098 -8.5703 0.0426 26 1 3.5540 -8.3847 1.6452 27 1 1.9591 -10.1902 1.1286 28 1 3.6261 -10.7756 0.9037 29 1 2.1377 -11.4471 -0.9862 30 1 3.4581 -10.3816 -1.5245 31 1 1.2568 -7.5114 -1.8574 32 1 2.9394 -8.0639 -2.0374 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330671050.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:43 Heat of formation + Delta-G solvation = -121.020911 kcal Electronic energy + Delta-G solvation = -15393.083588 eV Core-core repulsion = 12671.359532 eV Total energy + Delta-G solvation = -2721.724056 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.16089 -39.71832 -36.13655 -34.58397 -33.79294 -31.86307 -29.65900 -27.65430 -26.07512 -24.36107 -21.76967 -21.41382 -19.80499 -17.90155 -17.81872 -17.24948 -16.87823 -16.68856 -16.33676 -15.92983 -15.61859 -14.97364 -14.60013 -14.38632 -14.03281 -13.71172 -13.56986 -13.17141 -12.87913 -12.81887 -12.62461 -12.15209 -11.95728 -11.72221 -11.43518 -11.12675 -10.98642 -10.86318 -10.28022 -9.98556 -8.67346 -8.34362 -6.13041 1.26057 1.44472 1.46612 1.56247 1.56886 2.17043 2.28013 2.98005 2.99807 3.32069 3.61890 3.80809 3.91902 3.93459 4.09940 4.17294 4.30569 4.47479 4.50270 4.60754 4.71661 4.79815 4.88434 5.00494 5.12514 5.24236 5.40666 5.41727 6.19676 6.20545 6.48065 7.06708 7.21785 8.74674 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.069579 B = 0.004138 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.321572 B = 6765.124114 C = 6935.963992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.280 1.280 5 H -0.261 1.261 6 H -0.261 1.261 7 C -0.548 4.548 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.128 4.128 11 C 0.533 3.467 12 O -0.564 6.564 13 N -0.705 5.705 14 C 0.113 3.887 15 H 0.063 0.937 16 C -0.122 4.122 17 C -0.149 4.149 18 C 0.046 3.954 19 O -0.403 6.403 20 C 0.056 3.944 21 H 0.271 0.729 22 H 0.112 0.888 23 H 0.112 0.888 24 H 0.419 0.581 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.155 -18.615 0.005 22.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.205 1.205 5 H -0.186 1.186 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.280 4.280 11 C 0.319 3.681 12 O -0.442 6.442 13 N -0.360 5.360 14 C 0.007 3.993 15 H 0.081 0.919 16 C -0.159 4.159 17 C -0.187 4.187 18 C -0.030 4.030 19 O -0.321 6.321 20 C -0.022 4.022 21 H 0.080 0.920 22 H 0.130 0.870 23 H 0.130 0.870 24 H 0.257 0.743 25 H 0.113 0.887 26 H 0.101 0.899 27 H 0.081 0.919 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.840 -18.943 -0.064 21.826 hybrid contribution 1.801 1.517 0.095 2.357 sum 12.641 -17.426 0.031 21.528 Atomic orbital electron populations 1.70184 1.08037 1.28692 1.47931 1.26143 0.95945 1.03362 0.93672 0.84994 0.77789 0.75614 0.79539 1.20473 1.18582 1.18600 1.23187 0.95399 0.91958 1.59034 0.89765 1.85628 1.10657 0.99343 1.97076 1.23369 1.03536 0.94042 1.07004 1.20168 0.86278 0.86810 0.74799 1.90707 1.17539 1.86047 1.49897 1.45701 1.10377 1.04335 1.75598 1.21601 0.98953 0.81253 0.97461 0.91855 1.21883 0.97655 0.93916 1.02494 1.22181 1.02761 0.96180 0.97550 1.22930 0.93087 0.93195 0.93744 1.87970 1.43375 1.16278 1.84482 1.22865 1.00495 0.82961 0.95914 0.91992 0.86954 0.86991 0.74295 0.88722 0.89913 0.91891 0.87400 0.87315 0.91328 0.91497 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.29 13.22 21.65 0.29 -56.01 16 2 C 0.01 0.77 5.49 84.86 0.47 1.24 16 3 Si 1.00 43.41 29.55 68.60 2.03 45.44 16 4 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 6 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 7 C -0.55 -31.25 9.50 67.96 0.65 -30.60 16 8 H 0.08 4.42 7.80 -2.92 -0.02 4.39 16 9 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 10 C -0.13 -5.01 6.16 71.24 0.44 -4.57 16 11 C 0.53 19.60 7.81 87.66 0.68 20.29 16 12 O -0.56 -26.57 15.53 -3.01 -0.05 -26.62 16 13 N -0.70 -17.33 5.08 -442.09 -2.25 -19.58 16 14 C 0.11 2.64 2.65 45.08 0.12 2.76 16 15 H 0.06 1.93 7.58 -2.39 -0.02 1.92 16 16 C -0.12 -1.71 5.50 30.71 0.17 -1.54 16 17 C -0.15 -1.85 6.14 30.69 0.19 -1.66 16 18 C 0.05 0.67 6.84 72.01 0.49 1.17 16 19 O -0.40 -9.77 10.77 -148.98 -1.60 -11.37 16 20 C 0.06 1.36 6.42 72.01 0.46 1.83 16 21 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 22 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 23 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 24 H 0.42 6.94 8.60 -92.71 -0.80 6.15 16 25 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -77.39 286.28 1.24 -76.16 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.32 Total: 12.83 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 3.67 Total: -11.10 kcal Atomic # 7 Polarization: -73.63 SS G_CDS: -1.96 Total: -75.59 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -1.65 Total: -37.99 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -77.39 1.24 -76.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330671050.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.864 kcal (2) G-P(sol) polarization free energy of solvation -77.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds