Wall clock time and date at job start Sun Mar 29 2020 22:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00217 * 2 1 4 4 H 1.48501 * 109.46972 * 269.99898 * 3 2 1 5 5 H 1.48503 * 109.46961 * 29.99769 * 3 2 1 6 6 H 1.48496 * 109.47242 * 150.00043 * 3 2 1 7 7 C 1.37879 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99838 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00355 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47254 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46888 * 180.02562 * 10 9 7 12 12 C 1.34776 * 119.99989 * 179.97438 * 11 10 9 13 13 O 1.21279 * 120.00010 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00355 * 179.97438 * 12 11 10 15 15 O 1.42895 * 108.73162 * 32.05399 * 14 12 11 16 16 C 1.53161 * 108.98806 * 150.65544 * 14 12 11 17 17 C 1.55156 * 109.01759 * 150.78936 * 16 14 12 18 18 S 1.83990 * 100.91039 * 318.59420 * 17 16 14 19 19 C 1.53713 * 108.88839 * 273.54932 * 14 12 11 20 20 H 0.97002 * 119.99714 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46984 * 59.99943 * 9 7 2 22 22 H 1.09006 * 109.46807 * 300.00342 * 9 7 2 23 23 H 1.08997 * 109.47009 * 60.00411 * 10 9 7 24 24 H 1.08994 * 109.47009 * 299.99964 * 10 9 7 25 25 H 0.97007 * 120.00304 * 359.97438 * 11 10 9 26 26 H 0.96702 * 114.00433 * 302.94953 * 15 14 12 27 27 H 1.08999 * 109.54647 * 30.86031 * 16 14 12 28 28 H 1.09002 * 109.45076 * 270.66343 * 16 14 12 29 29 H 1.08999 * 111.13193 * 200.68087 * 17 16 14 30 30 H 1.09004 * 111.13201 * 76.50803 * 17 16 14 31 31 H 1.09002 * 110.34331 * 117.50455 * 19 14 12 32 32 H 1.09000 * 110.34038 * 355.35556 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 7 5.4865 -2.6366 0.0001 12 6 6.1604 -3.8038 0.0008 13 8 5.5540 -4.8541 0.0018 14 6 7.6674 -3.8039 0.0002 15 8 8.1266 -2.6564 0.7174 16 6 8.1659 -5.0658 0.7107 17 6 9.5408 -5.4707 0.1167 18 16 9.2451 -5.1796 -1.6758 19 6 8.1645 -3.7149 -1.4516 20 1 -0.4850 0.8401 -0.0004 21 1 3.8752 -0.6797 0.8895 22 1 3.8745 -0.6808 -0.8905 23 1 3.6579 -3.1506 -0.8897 24 1 3.6585 -3.1502 0.8903 25 1 5.9715 -1.7965 -0.0003 26 1 7.7978 -1.8167 0.3682 27 1 7.4507 -5.8748 0.5619 28 1 8.2731 -4.8639 1.7765 29 1 9.7602 -6.5201 0.3134 30 1 10.3364 -4.8277 0.4932 31 1 8.7337 -2.7976 -1.6017 32 1 7.3231 -3.7554 -2.1433 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330845602.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:35 Heat of formation + Delta-G solvation = -117.838622 kcal Electronic energy + Delta-G solvation = -15795.326987 eV Core-core repulsion = 13073.740925 eV Total energy + Delta-G solvation = -2721.586061 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.58965 -38.46001 -36.89434 -34.95533 -34.37335 -32.14667 -30.52557 -27.42709 -26.22282 -23.29891 -22.61210 -21.07031 -19.71023 -19.02483 -17.95435 -17.25331 -16.94141 -16.36460 -16.23762 -15.75608 -15.36097 -15.23607 -14.73485 -14.61132 -14.11970 -13.52897 -13.39098 -13.28136 -13.08064 -12.95764 -12.52017 -12.26416 -12.20153 -12.07888 -11.76909 -11.53324 -11.19462 -10.79711 -10.60645 -10.20879 -8.80792 -8.30711 -6.38710 0.68995 1.11681 1.39377 1.41046 1.42395 1.53191 1.91079 2.36544 2.92619 3.04712 3.24560 3.37830 3.60569 3.86996 4.11105 4.25406 4.32103 4.37572 4.45573 4.66773 4.70680 4.73990 4.97080 5.05759 5.33350 5.37559 5.60191 6.16661 6.23805 6.54041 6.69352 7.03062 7.26195 8.86148 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.047133 B = 0.004728 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.914956 B = 5920.459065 C = 6113.231006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.959 3.041 4 H -0.264 1.264 5 H -0.289 1.289 6 H -0.233 1.233 7 C -0.541 4.541 8 H 0.027 0.973 9 C -0.013 4.013 10 C 0.143 3.857 11 N -0.707 5.707 12 C 0.486 3.514 13 O -0.570 6.570 14 C 0.135 3.865 15 O -0.541 6.541 16 C -0.115 4.115 17 C -0.047 4.047 18 S -0.317 6.317 19 C -0.089 4.089 20 H 0.268 0.732 21 H 0.039 0.961 22 H 0.039 0.961 23 H 0.047 0.953 24 H 0.045 0.955 25 H 0.413 0.587 26 H 0.396 0.604 27 H 0.092 0.908 28 H 0.107 0.893 29 H 0.129 0.871 30 H 0.114 0.886 31 H 0.136 0.864 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.959 -3.461 0.181 23.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.782 3.218 4 H -0.189 1.189 5 H -0.215 1.215 6 H -0.156 1.156 7 C -0.580 4.580 8 H 0.045 0.955 9 C -0.050 4.050 10 C 0.020 3.980 11 N -0.360 5.360 12 C 0.271 3.729 13 O -0.449 6.449 14 C 0.089 3.911 15 O -0.350 6.350 16 C -0.154 4.154 17 C -0.194 4.194 18 S -0.091 6.091 19 C -0.238 4.238 20 H 0.077 0.923 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.250 0.750 26 H 0.247 0.753 27 H 0.110 0.890 28 H 0.125 0.875 29 H 0.147 0.853 30 H 0.132 0.868 31 H 0.155 0.845 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 23.063 -5.112 -0.465 23.627 hybrid contribution -1.265 1.861 0.486 2.302 sum 21.797 -3.251 0.021 22.039 Atomic orbital electron populations 1.70080 1.08703 1.28473 1.51879 1.26102 0.95667 1.03955 0.93592 0.85535 0.79779 0.77175 0.79357 1.18940 1.21495 1.15579 1.21251 0.91672 0.93321 1.51742 0.95462 1.19661 0.94384 0.92676 0.98326 1.21096 0.77973 0.98768 1.00184 1.46002 1.07683 1.08830 1.73438 1.21698 0.91477 0.83895 0.75876 1.90706 1.70819 1.32582 1.50828 1.21959 0.87601 0.90042 0.91517 1.86691 1.74238 1.16145 1.57940 1.22347 0.96881 0.94198 1.01997 1.24430 0.98903 1.07138 0.88925 1.88044 1.64769 1.40413 1.15889 1.24682 1.01521 1.00736 0.96824 0.92331 0.94238 0.94274 0.93489 0.93689 0.74953 0.75251 0.88955 0.87454 0.85264 0.86784 0.84547 0.88283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.54 13.96 21.45 0.30 -58.25 16 2 C 0.00 0.22 5.47 84.66 0.46 0.69 16 3 Si 0.96 40.82 27.47 68.60 1.88 42.70 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 5 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.23 -8.60 6.54 99.48 0.65 -7.95 16 7 C -0.54 -30.11 9.66 25.60 0.25 -29.86 16 8 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 9 C -0.01 -0.53 4.16 29.85 0.12 -0.41 16 10 C 0.14 5.51 5.61 86.38 0.48 6.00 16 11 N -0.71 -19.77 5.46 -463.08 -2.53 -22.30 16 12 C 0.49 14.14 6.35 87.66 0.56 14.70 16 13 O -0.57 -21.84 15.60 -3.03 -0.05 -21.89 16 14 C 0.13 2.78 1.21 -11.25 -0.01 2.76 16 15 O -0.54 -8.83 12.62 -148.98 -1.88 -10.71 16 16 C -0.12 -2.29 5.45 31.39 0.17 -2.12 16 17 C -0.05 -0.72 7.52 72.72 0.55 -0.17 16 18 S -0.32 -6.64 23.23 -56.49 -1.31 -7.95 16 19 C -0.09 -1.66 6.73 72.22 0.49 -1.17 16 20 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 21 H 0.04 1.55 7.20 -2.39 -0.02 1.53 16 22 H 0.04 1.50 7.57 -2.38 -0.02 1.48 16 23 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.41 8.12 6.75 -92.70 -0.63 7.49 16 26 H 0.40 3.61 7.34 -74.06 -0.54 3.07 16 27 H 0.09 2.26 6.80 -2.39 -0.02 2.25 16 28 H 0.11 1.93 8.04 -2.39 -0.02 1.91 16 29 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.14 1.78 7.93 -2.39 -0.02 1.76 16 32 H 0.10 2.07 7.63 -2.39 -0.02 2.05 16 Total: -1.00 -72.51 279.38 -0.60 -73.11 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -0.08 Total: 14.87 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 3.07 Total: -9.59 kcal Atomic # 7 Polarization: -78.32 SS G_CDS: -2.23 Total: -80.55 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -1.93 Total: -32.60 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 1.88 Total: 42.70 kcal Atomic # 16 Polarization: -6.64 SS G_CDS: -1.31 Total: -7.95 kcal Total: -72.51 -0.60 -73.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330845602.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.730 kcal (2) G-P(sol) polarization free energy of solvation -72.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds