Wall clock time and date at job start Sun Mar 29 2020 22:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 113.99965 * 2 1 4 4 H 1.09002 * 110.64125 * 29.29831 * 3 2 1 5 5 C 1.55157 * 110.71809 * 152.44124 * 3 2 1 6 6 C 1.55392 * 101.36576 * 153.94799 * 5 3 2 7 7 N 1.47431 * 104.87127 * 323.01456 * 6 5 3 8 8 C 1.34778 * 125.64579 * 204.10006 * 7 6 5 9 9 O 1.21279 * 119.99640 * 180.02562 * 8 7 6 10 10 C 1.50696 * 120.00123 * 0.03945 * 8 7 6 11 11 S 1.81003 * 109.46867 * 180.02562 * 10 8 7 12 12 C 1.76202 * 99.99872 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99807 * 0.02562 * 12 11 10 14 14 C 1.38795 * 120.00027 * 179.97438 * 12 11 10 15 15 N 1.31634 * 120.00229 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00023 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46610 * 60.00659 * 16 14 12 18 18 H 1.48500 * 109.47115 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47236 * 300.00453 * 16 14 12 20 20 C 1.47019 * 108.70142 * 24.13359 * 7 6 5 21 21 H 1.09000 * 109.47174 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47347 * 300.00092 * 1 2 3 23 23 H 1.08994 * 109.47247 * 59.99885 * 1 2 3 24 24 H 1.09004 * 111.00537 * 272.11662 * 5 3 2 25 25 H 1.09001 * 111.00741 * 35.97083 * 5 3 2 26 26 H 1.08999 * 110.34334 * 204.17153 * 6 5 3 27 27 H 1.08998 * 110.44545 * 81.91304 * 6 5 3 28 28 H 1.08998 * 109.47078 * 300.00341 * 10 8 7 29 29 H 1.08989 * 109.46870 * 60.00231 * 10 8 7 30 30 H 0.96995 * 120.00475 * 179.97438 * 15 14 12 31 31 H 1.09001 * 109.88251 * 239.51790 * 20 7 6 32 32 H 1.09004 * 109.88394 * 118.35703 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3538 2.0183 0.4992 5 6 3.4088 1.2836 0.6714 6 6 4.0962 2.4974 -0.0132 7 7 3.6084 2.4734 -1.4043 8 6 4.2383 3.0124 -2.4669 9 8 3.7418 2.9330 -3.5706 10 6 5.5597 3.7134 -2.2838 11 16 6.1453 4.3244 -3.8838 12 6 7.6600 5.0761 -3.3884 13 1 7.9588 5.0559 -2.3507 14 6 8.4695 5.6933 -4.3318 15 7 8.1056 5.7176 -5.5966 16 14 10.0750 6.4909 -3.8066 17 1 10.9577 5.4676 -3.1908 18 1 10.7484 7.0765 -4.9935 19 1 9.7950 7.5628 -2.8178 20 6 2.3207 1.7649 -1.4401 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 3.3277 1.4325 1.7482 25 1 3.9363 0.3569 0.4454 26 1 5.1798 2.3824 0.0107 27 1 3.8030 3.4265 0.4755 28 1 5.4342 4.5519 -1.5988 29 1 6.2879 3.0144 -1.8728 30 1 8.6711 6.1492 -6.2559 31 1 2.3923 0.8989 -2.0982 32 1 1.5376 2.4366 -1.7919 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331117357.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:01 Heat of formation + Delta-G solvation = -102.939422 kcal Electronic energy + Delta-G solvation = -15379.273022 eV Core-core repulsion = 12658.333038 eV Total energy + Delta-G solvation = -2720.939984 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.14277 -39.33371 -37.27704 -34.59074 -32.59285 -30.90523 -29.29092 -27.70796 -27.29087 -24.38832 -22.19905 -20.77791 -19.62678 -18.32046 -18.01257 -16.91218 -16.86927 -16.68542 -16.00480 -15.91565 -15.54101 -15.09990 -14.51543 -14.43687 -13.79890 -13.65407 -13.39093 -13.17038 -12.96198 -12.85917 -12.64074 -12.62795 -12.28366 -11.77292 -11.64365 -11.12917 -11.07561 -10.66111 -10.30094 -9.78137 -8.69763 -8.34704 -6.14362 1.21235 1.43981 1.44905 1.50687 1.55056 1.99356 2.27144 2.80882 2.99393 3.21249 3.44850 3.52264 3.86149 4.00206 4.19380 4.27189 4.31577 4.42368 4.47662 4.56439 4.63408 4.69874 4.76199 4.89100 4.96405 5.11539 5.27067 5.41070 6.18716 6.19389 6.31538 7.04824 7.06089 8.74488 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.060291 B = 0.004384 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.304117 B = 6385.409347 C = 6774.540841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.395 6.395 3 C 0.085 3.915 4 H 0.107 0.893 5 C -0.118 4.118 6 C 0.090 3.910 7 N -0.616 5.616 8 C 0.544 3.456 9 O -0.569 6.569 10 C -0.118 4.118 11 S -0.154 6.154 12 C -0.547 4.547 13 H 0.085 0.915 14 C 0.013 3.987 15 N -0.912 5.912 16 Si 1.001 2.999 17 H -0.261 1.261 18 H -0.279 1.279 19 H -0.260 1.260 20 C 0.082 3.918 21 H 0.097 0.903 22 H 0.063 0.937 23 H 0.042 0.958 24 H 0.125 0.875 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.272 0.728 31 H 0.054 0.946 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.411 -8.137 18.359 23.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.313 6.313 3 C 0.026 3.974 4 H 0.125 0.875 5 C -0.156 4.156 6 C -0.031 4.031 7 N -0.352 5.352 8 C 0.333 3.667 9 O -0.448 6.448 10 C -0.269 4.269 11 S 0.073 5.927 12 C -0.694 4.694 13 H 0.103 0.897 14 C -0.192 4.192 15 N -0.549 5.549 16 Si 0.822 3.178 17 H -0.186 1.186 18 H -0.204 1.204 19 H -0.185 1.185 20 C -0.042 4.042 21 H 0.116 0.884 22 H 0.081 0.919 23 H 0.061 0.939 24 H 0.143 0.857 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.115 0.885 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.984 -8.355 16.511 22.046 hybrid contribution 1.113 0.712 0.672 1.482 sum -10.871 -7.643 17.183 21.722 Atomic orbital electron populations 1.23045 0.79294 1.04074 1.01076 1.87933 1.21687 1.27003 1.94681 1.23189 0.96463 0.85609 0.92126 0.87514 1.22985 0.93007 0.97874 1.01696 1.22803 1.00924 1.00202 0.79180 1.48332 1.22370 1.55953 1.08575 1.19893 0.85715 0.78021 0.83113 1.90684 1.67825 1.60054 1.26221 1.23291 0.96505 1.03349 1.03748 1.85633 1.26090 1.72145 1.08836 1.23169 1.06583 1.42076 0.97621 0.89696 1.26166 1.02673 0.96022 0.94309 1.70184 1.39499 1.42702 1.02485 0.84971 0.76323 0.78550 0.77938 1.18562 1.20449 1.18488 1.22516 0.85304 0.96327 1.00041 0.88409 0.91866 0.93927 0.85701 0.90289 0.89134 0.88505 0.87081 0.87326 0.91956 0.92747 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.86 113.37 1.23 1.49 16 2 O -0.39 -7.35 10.43 -148.98 -1.55 -8.90 16 3 C 0.08 1.42 3.41 31.78 0.11 1.53 16 4 H 0.11 1.25 7.85 -2.39 -0.02 1.23 16 5 C -0.12 -1.68 6.85 32.16 0.22 -1.46 16 6 C 0.09 1.67 6.70 87.02 0.58 2.25 16 7 N -0.62 -18.00 3.33 -810.82 -2.70 -20.69 16 8 C 0.54 21.93 7.87 87.66 0.69 22.62 16 9 O -0.57 -28.52 16.19 -3.03 -0.05 -28.57 16 10 C -0.12 -4.87 5.16 71.23 0.37 -4.50 16 11 S -0.15 -8.77 20.57 -56.49 -1.16 -9.94 16 12 C -0.55 -31.45 9.50 67.95 0.65 -30.80 16 13 H 0.08 4.49 7.80 -2.91 -0.02 4.46 16 14 C 0.01 0.74 5.49 84.86 0.47 1.21 16 15 N -0.91 -56.55 13.22 21.65 0.29 -56.26 16 16 Si 1.00 43.53 29.55 68.60 2.03 45.56 16 17 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 18 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 20 C 0.08 2.09 6.64 86.73 0.58 2.66 16 21 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.06 0.53 8.11 -2.39 -0.02 0.51 16 23 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 24 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.09 1.61 7.48 -2.39 -0.02 1.59 16 27 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.11 4.08 8.14 -2.40 -0.02 4.06 16 29 H 0.11 4.05 7.85 -2.40 -0.02 4.03 16 30 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 31 H 0.05 1.63 8.06 -2.39 -0.02 1.61 16 32 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -78.71 289.55 2.84 -75.87 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 1.10 Total: 7.91 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 4.89 Total: -4.99 kcal Atomic # 7 Polarization: -74.54 SS G_CDS: -2.41 Total: -76.95 kcal Atomic # 8 Polarization: -35.87 SS G_CDS: -1.60 Total: -37.47 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.94 kcal Total: -78.71 2.84 -75.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331117357.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.067 kcal (2) G-P(sol) polarization free energy of solvation -78.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds