Wall clock time and date at job start Sun Mar 29 2020 22:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00185 * 2 1 4 4 C 1.53005 * 113.28139 * 313.06772 * 3 2 1 5 5 C 1.53497 * 114.21002 * 180.02562 * 3 2 1 6 6 N 1.47065 * 87.98429 * 220.34207 * 5 3 2 7 7 C 1.34779 * 136.05811 * 207.07847 * 6 5 3 8 8 O 1.21282 * 119.99922 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00037 * 180.02562 * 7 6 5 10 10 S 1.81000 * 109.46881 * 180.02562 * 9 7 6 11 11 C 1.76206 * 99.99929 * 180.02562 * 10 9 7 12 12 H 1.07998 * 119.99720 * 359.97438 * 11 10 9 13 13 C 1.38796 * 119.99847 * 180.02562 * 11 10 9 14 14 N 1.31625 * 120.00398 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99778 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46907 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47393 * 119.99621 * 15 13 11 18 18 H 1.48503 * 109.46784 * 240.00115 * 15 13 11 19 19 C 1.47066 * 87.88410 * 27.34360 * 6 5 3 20 20 H 1.08996 * 109.46759 * 299.99653 * 1 2 3 21 21 H 1.09000 * 109.47196 * 60.00044 * 1 2 3 22 22 H 1.09000 * 109.46652 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47178 * 286.93257 * 4 3 2 24 24 H 1.09002 * 109.47194 * 46.93061 * 4 3 2 25 25 H 1.08999 * 109.47435 * 166.93344 * 4 3 2 26 26 H 1.09000 * 113.46875 * 105.56410 * 5 3 2 27 27 H 1.08999 * 113.46387 * 335.12338 * 5 3 2 28 28 H 1.09000 * 109.47247 * 60.00371 * 9 7 6 29 29 H 1.09001 * 109.47358 * 299.99798 * 9 7 6 30 30 H 0.96996 * 120.00393 * 180.02562 * 14 13 11 31 31 H 1.08999 * 113.47035 * 87.44205 * 19 6 5 32 32 H 1.09008 * 113.46326 * 217.87884 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.3795 2.2483 -1.0268 5 6 3.5452 1.3110 -0.0006 6 7 3.4898 2.4309 0.9510 7 6 4.2843 3.4709 1.2732 8 8 5.3409 3.6274 0.6989 9 6 3.8596 4.4391 2.3470 10 16 5.1284 5.7146 2.5453 11 6 4.3945 6.6801 3.8237 12 1 3.4350 6.3972 4.2307 13 6 5.0492 7.8046 4.3067 14 7 6.2184 8.1496 3.8103 15 14 4.2715 8.8277 5.6625 16 1 2.9662 8.2320 6.0452 17 1 5.1712 8.8503 6.8436 18 1 4.0585 10.2145 5.1757 19 6 2.1891 1.9127 1.4011 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 1.7002 1.9617 -2.0284 24 1 0.2934 2.1834 -0.9606 25 1 1.6955 3.2714 -0.8229 26 1 3.9779 1.5810 -0.9639 27 1 3.9827 0.4054 0.4196 28 1 3.7311 3.9045 3.2882 29 1 2.9167 4.9063 2.0628 30 1 6.6760 8.9352 4.1481 31 1 2.2691 1.1658 2.1910 32 1 1.4665 2.6955 1.6321 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332020335.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:43 Heat of formation + Delta-G solvation = -36.794501 kcal Electronic energy + Delta-G solvation = -15489.817638 eV Core-core repulsion = 12771.745913 eV Total energy + Delta-G solvation = -2718.071725 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.77365 -38.24676 -36.37602 -32.44642 -31.00160 -29.35906 -27.67388 -26.43132 -25.78542 -25.31301 -20.63599 -18.84330 -17.78572 -17.19324 -16.48913 -15.98275 -15.49202 -14.91270 -14.81717 -14.73818 -13.94633 -13.68282 -13.58451 -12.88657 -12.67492 -12.47936 -12.32313 -11.97556 -11.87447 -11.57629 -11.08125 -11.03249 -10.77625 -10.74519 -9.92172 -9.82781 -9.43609 -9.08974 -8.64075 -8.25688 -6.52474 -6.23215 -3.94274 2.65085 2.98053 3.20651 3.22243 3.29541 3.46375 3.61572 4.01890 4.18430 4.38282 4.65642 4.89384 5.03316 5.09298 5.12086 5.27710 5.30662 5.34757 5.44027 5.49336 5.54130 5.58697 5.62911 5.83728 5.87941 5.96928 6.11961 6.87561 7.58402 7.81843 8.33941 8.49917 9.22111 10.84329 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.043183 B = 0.004703 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.248642 B = 5952.815879 C = 6372.146392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.367 6.367 3 C 0.070 3.930 4 C -0.157 4.157 5 C 0.121 3.879 6 N -0.647 5.647 7 C 0.566 3.434 8 O -0.511 6.511 9 C -0.144 4.144 10 S -0.060 6.060 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.279 1.279 19 C 0.081 3.919 20 H 0.044 0.956 21 H 0.048 0.952 22 H 0.086 0.914 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.268 0.732 31 H 0.090 0.910 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.185 -14.266 -6.576 20.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.285 6.285 3 C 0.030 3.970 4 C -0.214 4.214 5 C -0.002 4.002 6 N -0.387 5.387 7 C 0.356 3.644 8 O -0.384 6.384 9 C -0.294 4.294 10 S 0.167 5.833 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.135 4.135 14 N -0.502 5.502 15 Si 0.746 3.254 16 H -0.196 1.196 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.044 4.044 20 H 0.063 0.937 21 H 0.066 0.934 22 H 0.105 0.895 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.193 -13.863 -7.367 19.280 hybrid contribution -1.943 0.614 1.675 2.638 sum -13.136 -13.249 -5.692 19.506 Atomic orbital electron populations 1.22805 0.80942 1.02803 1.00480 1.87948 1.19997 1.25797 1.94714 1.23230 0.94436 0.84192 0.95179 1.21984 1.01060 0.99766 0.98561 1.22897 0.92602 0.89973 0.94765 1.49274 1.22530 1.25914 1.41030 1.19895 0.82325 0.79237 0.82934 1.90725 1.22003 1.72964 1.52749 1.23470 1.06475 1.00772 0.98707 1.85417 1.23564 1.24451 1.49870 1.22896 1.08455 1.13732 1.23253 0.90865 1.24992 0.94824 0.96623 0.97102 1.70023 1.13657 1.25499 1.41062 0.86107 0.79108 0.79553 0.80668 1.19623 1.20520 1.20533 1.23661 0.85395 0.97916 0.97384 0.93728 0.93384 0.89519 0.90972 0.91243 0.90389 0.89704 0.89170 0.89244 0.89285 0.92195 0.89152 0.90131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.36 101.05 1.05 1.22 16 2 O -0.37 -3.62 10.71 -35.23 -0.38 -4.00 16 3 C 0.07 0.72 1.56 -89.97 -0.14 0.58 16 4 C -0.16 -1.42 8.96 37.16 0.33 -1.08 16 5 C 0.12 1.50 8.04 -8.51 -0.07 1.43 16 6 N -0.65 -9.80 3.50 -185.05 -0.65 -10.44 16 7 C 0.57 11.31 8.10 -10.99 -0.09 11.22 16 8 O -0.51 -12.22 16.64 5.56 0.09 -12.13 16 9 C -0.14 -3.02 5.98 36.01 0.22 -2.80 16 10 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 11 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 12 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 13 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 14 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 15 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 C 0.08 0.91 7.82 -8.38 -0.07 0.84 16 20 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 21 H 0.05 0.28 6.36 -51.93 -0.33 -0.05 16 22 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.50 6.12 -51.93 -0.32 0.18 16 25 H 0.08 0.82 7.94 -51.93 -0.41 0.41 16 26 H 0.08 1.05 8.12 -51.93 -0.42 0.63 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 29 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 30 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.82 8.13 -51.92 -0.42 0.40 16 LS Contribution 291.09 15.07 4.39 4.39 Total: -1.00 -34.28 291.09 -6.02 -40.30 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: -4.41 Total: -3.55 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 1.43 Total: -1.61 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.09 Total: -35.92 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.28 Total: -16.13 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -34.28 -6.02 -40.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332020335.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.508 kcal (2) G-P(sol) polarization free energy of solvation -34.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds