Wall clock time and date at job start Sun Mar 29 2020 22:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00185 * 2 1 4 4 C 1.53005 * 113.28139 * 313.06772 * 3 2 1 5 5 C 1.53497 * 114.21002 * 180.02562 * 3 2 1 6 6 N 1.47065 * 87.98429 * 220.34207 * 5 3 2 7 7 C 1.34779 * 136.05811 * 207.07847 * 6 5 3 8 8 O 1.21282 * 119.99922 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00037 * 180.02562 * 7 6 5 10 10 S 1.81000 * 109.46881 * 180.02562 * 9 7 6 11 11 C 1.76206 * 99.99929 * 180.02562 * 10 9 7 12 12 H 1.07998 * 119.99720 * 359.97438 * 11 10 9 13 13 C 1.38796 * 119.99847 * 180.02562 * 11 10 9 14 14 N 1.31625 * 120.00398 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99778 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46907 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47393 * 119.99621 * 15 13 11 18 18 H 1.48503 * 109.46784 * 240.00115 * 15 13 11 19 19 C 1.47066 * 87.88410 * 27.34360 * 6 5 3 20 20 H 1.08996 * 109.46759 * 299.99653 * 1 2 3 21 21 H 1.09000 * 109.47196 * 60.00044 * 1 2 3 22 22 H 1.09000 * 109.46652 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47178 * 286.93257 * 4 3 2 24 24 H 1.09002 * 109.47194 * 46.93061 * 4 3 2 25 25 H 1.08999 * 109.47435 * 166.93344 * 4 3 2 26 26 H 1.09000 * 113.46875 * 105.56410 * 5 3 2 27 27 H 1.08999 * 113.46387 * 335.12338 * 5 3 2 28 28 H 1.09000 * 109.47247 * 60.00371 * 9 7 6 29 29 H 1.09001 * 109.47358 * 299.99798 * 9 7 6 30 30 H 0.96996 * 120.00393 * 180.02562 * 14 13 11 31 31 H 1.08999 * 113.47035 * 87.44205 * 19 6 5 32 32 H 1.09008 * 113.46326 * 217.87884 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.3795 2.2483 -1.0268 5 6 3.5452 1.3110 -0.0006 6 7 3.4898 2.4309 0.9510 7 6 4.2843 3.4709 1.2732 8 8 5.3409 3.6274 0.6989 9 6 3.8596 4.4391 2.3470 10 16 5.1284 5.7146 2.5453 11 6 4.3945 6.6801 3.8237 12 1 3.4350 6.3972 4.2307 13 6 5.0492 7.8046 4.3067 14 7 6.2184 8.1496 3.8103 15 14 4.2715 8.8277 5.6625 16 1 2.9662 8.2320 6.0452 17 1 5.1712 8.8503 6.8436 18 1 4.0585 10.2145 5.1757 19 6 2.1891 1.9127 1.4011 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 1.7002 1.9617 -2.0284 24 1 0.2934 2.1834 -0.9606 25 1 1.6955 3.2714 -0.8229 26 1 3.9779 1.5810 -0.9639 27 1 3.9827 0.4054 0.4196 28 1 3.7311 3.9045 3.2882 29 1 2.9167 4.9063 2.0628 30 1 6.6760 8.9352 4.1481 31 1 2.2691 1.1658 2.1910 32 1 1.4665 2.6955 1.6321 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332020335.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:42 Heat of formation + Delta-G solvation = -61.502396 kcal Electronic energy + Delta-G solvation = -15490.889052 eV Core-core repulsion = 12771.745913 eV Total energy + Delta-G solvation = -2719.143139 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.83364 -39.58954 -37.36782 -34.60720 -32.30465 -30.56568 -28.51975 -27.70004 -27.37246 -26.53573 -21.72769 -20.18951 -19.48887 -18.36944 -17.73834 -17.15381 -16.89561 -16.31852 -16.23209 -16.00873 -15.57141 -14.83090 -14.51842 -14.36665 -14.03766 -13.72085 -13.23465 -13.18452 -13.03624 -12.91986 -12.79098 -12.60443 -12.31107 -11.74043 -11.51492 -11.17424 -11.14334 -10.56948 -10.32217 -9.87291 -8.71186 -8.36486 -6.15985 1.14160 1.40403 1.41294 1.47045 1.55282 1.86178 2.25099 2.72828 2.97970 3.13007 3.20086 3.50381 3.70372 3.97265 4.19259 4.35305 4.41883 4.45246 4.49974 4.54794 4.61422 4.67108 4.76762 4.78058 4.83294 4.95623 5.17279 5.40160 6.18236 6.18367 6.50424 7.00274 7.04671 8.73212 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.043183 B = 0.004703 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.248642 B = 5952.815879 C = 6372.146392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.378 6.378 3 C 0.090 3.910 4 C -0.156 4.156 5 C 0.110 3.890 6 N -0.645 5.645 7 C 0.565 3.435 8 O -0.564 6.564 9 C -0.117 4.117 10 S -0.149 6.149 11 C -0.547 4.547 12 H 0.083 0.917 13 C 0.014 3.986 14 N -0.911 5.911 15 Si 1.001 2.999 16 H -0.256 1.256 17 H -0.273 1.273 18 H -0.273 1.273 19 C 0.077 3.923 20 H 0.053 0.947 21 H 0.059 0.941 22 H 0.101 0.899 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.272 0.728 31 H 0.105 0.895 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.048 -15.180 -5.845 22.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.296 6.296 3 C 0.049 3.951 4 C -0.213 4.213 5 C -0.012 4.012 6 N -0.383 5.383 7 C 0.355 3.645 8 O -0.442 6.442 9 C -0.268 4.268 10 S 0.078 5.922 11 C -0.694 4.694 12 H 0.101 0.899 13 C -0.190 4.190 14 N -0.548 5.548 15 Si 0.822 3.178 16 H -0.180 1.180 17 H -0.199 1.199 18 H -0.198 1.198 19 C -0.045 4.045 20 H 0.072 0.928 21 H 0.077 0.923 22 H 0.120 0.880 23 H 0.096 0.904 24 H 0.111 0.889 25 H 0.080 0.920 26 H 0.099 0.901 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.081 0.919 31 H 0.123 0.877 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.117 -14.834 -6.644 21.529 hybrid contribution -1.150 0.713 1.369 1.925 sum -15.267 -14.121 -5.276 21.456 Atomic orbital electron populations 1.23058 0.79059 1.04222 1.01491 1.87936 1.21959 1.24992 1.94752 1.22921 0.92766 0.84787 0.94642 1.21998 1.02504 0.98336 0.98442 1.23175 0.94971 0.89047 0.94034 1.49121 1.23107 1.24961 1.41064 1.19586 0.82151 0.80263 0.82503 1.90699 1.24356 1.74611 1.54565 1.23249 1.04346 0.99048 1.00164 1.85605 1.28098 1.27832 1.50632 1.23219 1.08824 1.14123 1.23257 0.89881 1.26142 0.95223 0.97892 0.99776 1.70185 1.15440 1.26281 1.42859 0.84877 0.78553 0.77481 0.76846 1.17993 1.19878 1.19805 1.23984 0.83381 0.98558 0.98610 0.92788 0.92262 0.88047 0.90422 0.88908 0.92045 0.90092 0.88189 0.87635 0.87371 0.91904 0.87653 0.88562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.36 113.37 1.17 1.35 16 2 O -0.38 -6.31 10.71 -148.98 -1.60 -7.90 16 3 C 0.09 1.61 1.56 -10.37 -0.02 1.59 16 4 C -0.16 -2.43 8.96 71.98 0.65 -1.78 16 5 C 0.11 2.59 8.04 83.18 0.67 3.26 16 6 N -0.64 -18.76 3.50 -858.25 -3.00 -21.76 16 7 C 0.57 22.66 8.10 87.66 0.71 23.37 16 8 O -0.56 -27.92 16.64 -3.04 -0.05 -27.97 16 9 C -0.12 -4.87 5.98 71.24 0.43 -4.44 16 10 S -0.15 -8.43 20.57 -56.49 -1.16 -9.60 16 11 C -0.55 -31.42 9.50 67.95 0.65 -30.78 16 12 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 13 C 0.01 0.82 5.49 84.86 0.47 1.29 16 14 N -0.91 -56.16 13.22 21.65 0.29 -55.88 16 15 Si 1.00 43.51 29.55 68.60 2.03 45.54 16 16 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 17 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 18 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 19 C 0.08 1.52 7.82 83.26 0.65 2.17 16 20 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 21 H 0.06 0.47 6.36 -2.39 -0.02 0.45 16 22 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 23 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.09 1.01 6.12 -2.39 -0.01 1.00 16 25 H 0.06 1.19 7.94 -2.39 -0.02 1.17 16 26 H 0.08 1.97 8.12 -2.39 -0.02 1.95 16 27 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 29 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 30 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 31 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.10 1.64 8.13 -2.38 -0.02 1.62 16 Total: -1.00 -76.22 291.09 2.98 -73.24 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 1.10 Total: 8.30 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 5.37 Total: -3.98 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -2.71 Total: -77.64 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -1.65 Total: -35.87 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.60 kcal Total: -76.22 2.98 -73.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332020335.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.740 kcal (2) G-P(sol) polarization free energy of solvation -76.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds