Wall clock time and date at job start Sun Mar 29 2020 23:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35875 * 118.69575 * 2 1 4 4 C 1.40855 * 120.56640 * 180.02562 * 3 2 1 5 5 C 1.38429 * 134.88685 * 180.02562 * 4 3 2 6 6 N 1.33922 * 107.83684 * 179.97438 * 5 4 3 7 7 H 0.97006 * 125.02163 * 179.97438 * 6 5 4 8 8 N 1.39973 * 109.95060 * 359.97390 * 6 5 4 9 9 C 1.31455 * 109.02449 * 0.02562 * 8 6 5 10 10 C 1.46708 * 134.98630 * 180.02562 * 9 8 6 11 11 C 1.47012 * 120.72911 * 359.94902 * 10 9 8 12 12 O 1.21698 * 120.00248 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99884 * 180.02562 * 11 10 9 14 14 C 1.36825 * 120.00120 * 180.02562 * 13 11 10 15 15 H 1.07998 * 119.99533 * 359.97438 * 14 13 11 16 16 C 1.39039 * 120.00197 * 179.97438 * 14 13 11 17 17 N 1.31371 * 119.99987 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00210 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47316 * 89.99549 * 18 16 14 20 20 H 1.48501 * 109.47047 * 210.00365 * 18 16 14 21 21 H 1.48504 * 109.46776 * 329.99893 * 18 16 14 22 22 C 1.38725 * 118.54076 * 179.97438 * 10 9 8 23 23 H 1.08995 * 109.47166 * 89.99673 * 1 2 3 24 24 H 1.09003 * 109.47059 * 210.00524 * 1 2 3 25 25 H 1.09001 * 109.47076 * 330.00025 * 1 2 3 26 26 H 1.07999 * 119.72208 * 359.72386 * 3 2 1 27 27 H 1.08006 * 126.07914 * 359.89305 * 5 4 3 28 28 H 0.96999 * 120.00289 * 359.97438 * 13 11 10 29 29 H 0.97000 * 119.99816 * 180.02562 * 17 16 14 30 30 H 1.07994 * 119.32591 * 180.02562 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1594 1.1919 0.0000 4 6 3.5672 1.2378 -0.0005 5 6 4.5116 2.2500 -0.0003 6 7 5.7236 1.6802 -0.0006 7 1 6.5654 2.1623 -0.0008 8 7 5.5960 0.2863 -0.0004 9 6 4.3194 -0.0272 -0.0006 10 6 3.5596 -1.2822 -0.0002 11 6 4.2516 -2.5793 -0.0004 12 8 5.4679 -2.6201 -0.0005 13 7 3.5390 -3.7232 -0.0005 14 6 4.1830 -4.9304 -0.0002 15 1 5.2624 -4.9666 -0.0003 16 6 3.4478 -6.1106 0.0002 17 7 4.0662 -7.2696 0.0000 18 14 1.5809 -6.0480 0.0011 19 1 1.0854 -6.0315 -1.3987 20 1 1.0459 -7.2432 0.7016 21 1 1.1271 -4.8196 0.7013 22 6 2.1738 -1.2180 -0.0001 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.5938 2.1119 -0.0045 27 1 4.3073 3.3105 -0.0011 28 1 2.5695 -3.6907 -0.0001 29 1 3.5533 -8.0929 -0.0001 30 1 1.6020 -2.1341 0.0007 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334199154.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:49 Heat of formation + Delta-G solvation = 61.571046 kcal Electronic energy + Delta-G solvation = -16819.162896 eV Core-core repulsion = 14002.205421 eV Total energy + Delta-G solvation = -2816.957475 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.96546 -38.41060 -36.91371 -34.01540 -32.18834 -31.78188 -30.84481 -29.79091 -26.33253 -25.22152 -23.72509 -21.20771 -20.84204 -19.29928 -18.35975 -17.73592 -16.62264 -15.89551 -15.05691 -14.72764 -14.58184 -14.00771 -13.49985 -13.47957 -13.26494 -13.22572 -12.65582 -12.20754 -12.01448 -11.65021 -11.37999 -11.29592 -10.96609 -10.62414 -10.18779 -9.99534 -9.94643 -9.57548 -8.55625 -8.43806 -8.21432 -7.28215 -6.41158 -3.80588 0.62810 2.01899 2.52971 2.87308 3.01590 3.05631 3.12453 3.65602 4.04291 4.41264 4.46249 4.51040 4.83856 5.09503 5.22760 5.28999 5.36448 5.50396 5.64753 5.72278 5.73579 5.98111 6.05975 6.30975 6.53063 6.64471 6.84744 7.07702 7.23618 7.50587 7.88918 8.12463 8.55792 8.90835 9.36305 9.88413 10.70734 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.026689 B = 0.007347 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.887526 B = 3809.924024 C = 4843.667527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.114 4.114 3 C -0.054 4.054 4 C -0.204 4.204 5 C 0.065 3.935 6 N -0.438 5.438 7 H 0.440 0.560 8 N -0.258 5.258 9 C 0.130 3.870 10 C -0.064 4.064 11 C 0.477 3.523 12 O -0.564 6.564 13 N -0.572 5.572 14 C -0.290 4.290 15 H 0.124 0.876 16 C 0.040 3.960 17 N -0.867 5.867 18 Si 0.877 3.123 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.266 1.266 22 C -0.081 4.081 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.119 0.881 27 H 0.184 0.816 28 H 0.371 0.629 29 H 0.277 0.723 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.211 18.636 -0.035 20.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.116 4.116 3 C -0.075 4.075 4 C -0.214 4.214 5 C -0.090 4.090 6 N -0.139 5.139 7 H 0.284 0.716 8 N -0.083 5.083 9 C -0.028 4.028 10 C -0.071 4.071 11 C 0.266 3.734 12 O -0.447 6.447 13 N -0.210 5.210 14 C -0.419 4.419 15 H 0.142 0.858 16 C -0.165 4.165 17 N -0.505 5.505 18 Si 0.703 3.297 19 H -0.192 1.192 20 H -0.198 1.198 21 H -0.191 1.191 22 C -0.105 4.105 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.137 0.863 27 H 0.201 0.799 28 H 0.205 0.795 29 H 0.087 0.913 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.139 17.818 -0.034 18.846 hybrid contribution -1.803 0.478 0.013 1.866 sum -7.942 18.296 -0.021 19.945 Atomic orbital electron populations 1.20782 0.91371 1.02462 1.02005 1.19001 0.95863 0.92462 1.04257 1.19869 0.90744 0.97153 0.99732 1.19541 0.94757 0.91609 1.15527 1.22563 0.85381 0.98628 1.02466 1.46562 1.07817 1.06413 1.53155 0.71584 1.77891 1.17180 0.86922 1.26351 1.21584 0.89917 0.93092 0.98249 1.20344 0.91714 0.90745 1.04316 1.17326 0.87528 0.82697 0.85824 1.90719 1.12688 1.86535 1.54785 1.42210 1.07697 1.06176 1.64936 1.19575 0.95803 0.80479 1.46006 0.85819 1.25122 0.98934 0.94897 0.97498 1.69606 1.36298 0.97423 1.47222 0.86682 0.84947 0.78792 0.79281 1.19174 1.19790 1.19105 1.21012 0.92554 0.97608 0.99337 0.91552 0.91693 0.91912 0.86299 0.79931 0.79485 0.91272 0.85761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 9.93 36.01 0.36 -0.77 16 2 C -0.11 -1.60 5.82 -105.24 -0.61 -2.22 16 3 C -0.05 -0.71 9.58 -39.44 -0.38 -1.09 16 4 C -0.20 -3.08 6.34 -105.21 -0.67 -3.75 16 5 C 0.07 0.73 12.08 -16.57 -0.20 0.53 16 6 N -0.44 -5.71 7.18 30.87 0.22 -5.49 16 7 H 0.44 3.79 8.96 -182.69 -1.64 2.15 16 8 N -0.26 -5.17 12.24 34.36 0.42 -4.75 16 9 C 0.13 2.62 7.27 -80.98 -0.59 2.03 16 10 C -0.06 -1.37 6.05 -102.74 -0.62 -1.99 16 11 C 0.48 12.37 7.71 -12.71 -0.10 12.27 16 12 O -0.56 -16.92 15.89 5.19 0.08 -16.84 16 13 N -0.57 -14.57 5.03 -12.08 -0.06 -14.63 16 14 C -0.29 -8.40 10.16 -15.03 -0.15 -8.55 16 15 H 0.12 4.07 7.38 -52.49 -0.39 3.68 16 16 C 0.04 1.10 5.50 -17.45 -0.10 1.01 16 17 N -0.87 -25.14 13.95 55.50 0.77 -24.37 16 18 Si 0.88 19.25 27.74 -169.99 -4.71 14.54 16 19 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.27 -5.30 6.52 56.52 0.37 -4.94 16 22 C -0.08 -1.40 9.08 -39.17 -0.36 -1.75 16 23 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.65 8.06 -51.93 -0.42 0.23 16 25 H 0.06 0.53 8.04 -51.93 -0.42 0.11 16 26 H 0.12 1.13 8.04 -52.49 -0.42 0.70 16 27 H 0.18 1.04 8.06 -52.48 -0.42 0.62 16 28 H 0.37 8.24 3.80 -40.82 -0.16 8.08 16 29 H 0.28 7.34 8.31 -40.82 -0.34 7.01 16 30 H 0.12 1.99 6.37 -52.49 -0.33 1.66 16 LS Contribution 267.46 15.07 4.03 4.03 Total: -1.00 -36.64 267.46 -6.44 -43.08 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -3.79 Total: 8.70 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -3.41 Total: -4.28 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: 1.36 Total: -49.23 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: 0.08 Total: -16.84 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.54 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -36.64 -6.44 -43.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334199154.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.652 kcal (2) G-P(sol) polarization free energy of solvation -36.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds