Wall clock time and date at job start Sun Mar 29 2020 22:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31517 * 119.99524 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00267 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46589 * 89.99875 * 8 6 4 10 10 H 1.48490 * 109.47303 * 209.99928 * 8 6 4 11 11 H 1.48497 * 109.46869 * 330.00523 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21287 * 119.99681 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00198 * 180.02562 * 13 12 2 16 16 O 1.42902 * 108.84856 * 327.87980 * 15 13 12 17 17 C 1.52933 * 108.89158 * 209.43501 * 15 13 12 18 18 C 1.55149 * 108.96484 * 209.10532 * 17 15 13 19 19 S 1.83990 * 100.90758 * 41.44106 * 18 17 15 20 20 C 1.53713 * 108.88646 * 86.45289 * 15 13 12 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.97001 * 119.99599 * 179.97438 * 7 6 4 25 25 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 26 26 H 0.96702 * 114.00043 * 59.30016 * 16 15 13 27 27 H 1.08999 * 109.60541 * 329.03985 * 17 15 13 28 28 H 1.09010 * 109.60317 * 89.17652 * 17 15 13 29 29 H 1.09003 * 111.13390 * 283.52760 * 18 17 15 30 30 H 1.09000 * 111.16887 * 159.36891 * 18 17 15 31 31 H 1.08994 * 110.34135 * 242.49481 * 20 15 13 32 32 H 1.09007 * 110.33809 * 4.75162 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8589 1.1587 -2.4114 15 6 2.6488 -0.7286 -3.5878 16 8 3.5720 -1.7444 -3.1903 17 6 3.3783 0.2785 -4.4781 18 6 3.2481 -0.1696 -5.9578 19 16 1.4902 -0.7106 -6.0043 20 6 1.4584 -1.3896 -4.3010 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.9033 -0.5281 4.4375 25 1 2.2491 -1.6316 -1.1527 26 1 3.1957 -2.4065 -2.5945 27 1 2.9332 1.2657 -4.3544 28 1 4.4314 0.3176 -4.1992 29 1 3.9204 -0.9988 -6.1779 30 1 3.4208 0.6643 -6.6382 31 1 1.5830 -2.4722 -4.3222 32 1 0.5247 -1.1244 -3.8048 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334277578.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:44 Heat of formation + Delta-G solvation = -107.111195 kcal Electronic energy + Delta-G solvation = -16351.903511 eV Core-core repulsion = 13630.782626 eV Total energy + Delta-G solvation = -2721.120885 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.52420 -38.48089 -37.04208 -34.70881 -34.20366 -31.90049 -30.39630 -27.26514 -26.69608 -24.06587 -22.08128 -21.04235 -20.08217 -18.46233 -17.96425 -17.44854 -17.10040 -16.43331 -15.91609 -15.53385 -15.24856 -15.03596 -14.81368 -14.17296 -14.10902 -13.81159 -13.42793 -13.31321 -13.19270 -12.92341 -12.81191 -12.45812 -12.17779 -12.11907 -11.63888 -11.32679 -11.16311 -10.90173 -10.50544 -10.02370 -8.79083 -8.40354 -6.46611 0.70611 1.14929 1.25618 1.34547 1.42861 1.50817 2.09238 2.23913 2.95308 2.98590 3.28142 3.46831 3.65904 3.89326 4.12884 4.30709 4.40281 4.45070 4.52603 4.65135 4.68283 4.75613 4.95003 5.00591 5.25574 5.36636 5.52475 6.05763 6.33800 6.55429 6.73137 7.11201 7.26716 8.74595 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.045668 B = 0.006067 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.977453 B = 4613.675642 C = 4800.762739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.241 3.759 3 H 0.022 0.978 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.031 3.969 7 N -0.931 5.931 8 Si 0.936 3.064 9 H -0.259 1.259 10 H -0.293 1.293 11 H -0.264 1.264 12 N -0.690 5.690 13 C 0.483 3.517 14 O -0.576 6.576 15 C 0.133 3.867 16 O -0.544 6.544 17 C -0.115 4.115 18 C -0.046 4.046 19 S -0.311 6.311 20 C -0.087 4.087 21 H 0.041 0.959 22 H 0.069 0.931 23 H 0.045 0.955 24 H 0.271 0.729 25 H 0.407 0.593 26 H 0.395 0.605 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.131 0.869 31 H 0.134 0.866 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.311 -2.148 -16.713 16.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.137 3.863 3 H 0.040 0.960 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.169 4.169 7 N -0.570 5.570 8 Si 0.763 3.237 9 H -0.185 1.185 10 H -0.220 1.220 11 H -0.189 1.189 12 N -0.340 5.340 13 C 0.268 3.732 14 O -0.456 6.456 15 C 0.087 3.913 16 O -0.353 6.353 17 C -0.154 4.154 18 C -0.194 4.194 19 S -0.085 6.085 20 C -0.236 4.236 21 H 0.060 0.940 22 H 0.088 0.912 23 H 0.064 0.936 24 H 0.080 0.920 25 H 0.243 0.757 26 H 0.246 0.754 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.131 0.869 30 H 0.149 0.851 31 H 0.152 0.848 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.347 -0.949 -17.772 17.801 hybrid contribution 0.053 -0.165 2.075 2.082 sum -0.294 -1.114 -15.697 15.739 Atomic orbital electron populations 1.22356 0.97582 1.01974 0.99547 1.18808 0.91318 0.93180 0.83017 0.96003 1.21221 1.32484 1.13733 0.89727 0.92119 1.25524 0.96787 0.99189 0.95415 1.69967 1.46516 1.41809 0.98678 0.86049 0.79902 0.80490 0.77210 1.18471 1.22013 1.18851 1.45967 1.64630 1.14399 1.09041 1.21676 0.77988 0.87636 0.85904 1.90659 1.52333 1.17350 1.85284 1.21939 0.89164 0.88562 0.91643 1.86671 1.39345 1.39897 1.69411 1.22294 1.02724 0.98110 0.92301 1.24424 0.91852 1.05434 0.97651 1.87915 1.20477 1.79993 1.20152 1.24665 1.00491 1.04772 0.93674 0.94040 0.91220 0.93556 0.92007 0.75680 0.75390 0.88879 0.87855 0.86892 0.85117 0.84768 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.50 8.96 71.98 0.65 -5.86 16 2 C 0.24 10.98 2.15 44.24 0.10 11.07 16 3 H 0.02 1.13 6.63 -2.39 -0.02 1.12 16 4 C -0.53 -28.00 9.31 25.60 0.24 -27.76 16 5 H 0.06 3.36 7.98 -2.91 -0.02 3.34 16 6 C 0.03 1.71 5.45 84.65 0.46 2.17 16 7 N -0.93 -54.58 13.96 21.45 0.30 -54.28 16 8 Si 0.94 43.75 24.37 68.60 1.67 45.43 16 9 H -0.26 -11.35 6.87 99.48 0.68 -10.67 16 10 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 11 H -0.26 -12.30 6.53 99.48 0.65 -11.65 16 12 N -0.69 -24.93 4.97 -446.09 -2.22 -27.15 16 13 C 0.48 16.83 6.32 87.66 0.55 17.38 16 14 O -0.58 -24.64 15.26 -3.05 -0.05 -24.69 16 15 C 0.13 3.37 1.20 -11.32 -0.01 3.35 16 16 O -0.54 -12.14 12.59 -148.98 -1.88 -14.02 16 17 C -0.12 -2.75 5.43 31.31 0.17 -2.58 16 18 C -0.05 -0.84 7.52 72.72 0.55 -0.29 16 19 S -0.31 -7.20 23.23 -56.49 -1.31 -8.52 16 20 C -0.09 -1.93 6.72 72.22 0.49 -1.44 16 21 H 0.04 1.78 3.27 -2.39 -0.01 1.77 16 22 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 23 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 24 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 25 H 0.41 12.14 6.88 -92.71 -0.64 11.50 16 26 H 0.39 6.35 7.43 -74.06 -0.55 5.80 16 27 H 0.09 2.62 6.80 -2.39 -0.02 2.60 16 28 H 0.10 2.33 8.04 -2.38 -0.02 2.31 16 29 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.13 2.24 7.92 -2.39 -0.02 2.22 16 32 H 0.10 2.40 7.63 -2.38 -0.02 2.39 16 Total: -1.00 -66.80 271.41 -0.41 -67.22 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -0.12 Total: 19.97 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: 3.18 Total: -3.96 kcal Atomic # 7 Polarization: -79.51 SS G_CDS: -1.92 Total: -81.43 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -1.92 Total: -38.71 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.67 Total: 45.43 kcal Atomic # 16 Polarization: -7.20 SS G_CDS: -1.31 Total: -8.52 kcal Total: -66.80 -0.41 -67.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334277578.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.896 kcal (2) G-P(sol) polarization free energy of solvation -66.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds