Wall clock time and date at job start Sun Mar 29 2020 23:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36959 * 120.00225 * 2 1 4 4 H 1.08004 * 120.00267 * 169.48576 * 3 2 1 5 5 C 1.38976 * 120.00119 * 349.48657 * 3 2 1 6 6 N 1.31422 * 119.99684 * 5.74334 * 5 3 2 7 7 Si 1.86794 * 120.00368 * 185.74905 * 5 3 2 8 8 H 1.48498 * 109.47103 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47288 * 119.99498 * 7 5 3 10 10 H 1.48498 * 109.47203 * 239.99615 * 7 5 3 11 11 C 1.34780 * 120.00258 * 179.97438 * 2 1 3 12 12 O 1.21698 * 119.99431 * 4.45960 * 11 2 1 13 13 C 1.46842 * 120.00210 * 184.46218 * 11 2 1 14 14 C 1.36446 * 126.82927 * 316.03829 * 13 11 2 15 15 N 1.35596 * 109.72680 * 180.02562 * 14 13 11 16 16 H 0.96996 * 124.71863 * 179.70705 * 15 14 13 17 17 C 1.37704 * 110.56720 * 359.73258 * 15 14 13 18 18 N 1.32676 * 132.93516 * 179.97438 * 17 15 14 19 19 C 1.31616 * 121.69068 * 180.02562 * 18 17 15 20 20 C 1.38578 * 121.54441 * 0.02562 * 19 18 17 21 21 C 1.38349 * 119.32151 * 359.97438 * 20 19 18 22 22 C 1.39341 * 118.05746 * 0.03894 * 21 20 19 23 23 H 1.09002 * 109.47046 * 183.40071 * 1 2 3 24 24 H 1.09009 * 109.47317 * 303.39701 * 1 2 3 25 25 H 1.08998 * 109.47433 * 63.39980 * 1 2 3 26 26 H 0.96998 * 120.00346 * 180.02562 * 6 5 3 27 27 H 1.07991 * 125.13561 * 359.76677 * 14 13 11 28 28 H 1.08001 * 119.22527 * 179.97438 * 19 18 17 29 29 H 1.07990 * 120.33871 * 179.97438 * 20 19 18 30 30 H 1.08001 * 120.96726 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1498 1.1861 0.0000 4 1 3.2162 1.1939 0.1707 5 6 1.4724 2.3796 -0.2196 6 7 0.1617 2.3833 -0.3148 7 14 2.4250 3.9784 -0.3797 8 1 3.8776 3.7057 -0.2353 9 1 2.1638 4.5789 -1.7125 10 1 1.9910 4.9216 0.6819 11 6 2.1389 -1.1672 0.0005 12 8 1.5331 -2.2195 -0.0810 13 6 3.6039 -1.1691 0.0995 14 6 4.4700 -0.3554 -0.5711 15 7 5.7448 -0.6549 -0.2192 16 1 6.5332 -0.2114 -0.5693 17 6 5.7646 -1.6766 0.7038 18 7 6.7478 -2.3062 1.3341 19 6 6.5100 -3.2751 2.1926 20 6 5.2188 -3.6874 2.4811 21 6 4.1533 -3.0669 1.8537 22 6 4.4307 -2.0441 0.9489 23 1 -0.3633 -1.0259 0.0610 24 1 -0.3634 0.5657 0.8580 25 1 -0.3634 0.4601 -0.9189 26 1 -0.3111 3.2162 -0.4684 27 1 4.1837 0.4086 -1.2785 28 1 7.3407 -3.7608 2.6829 29 1 5.0461 -4.4848 3.1885 30 1 3.1363 -3.3666 2.0590 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334339867.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:01 Heat of formation + Delta-G solvation = 56.396592 kcal Electronic energy + Delta-G solvation = -17220.584408 eV Core-core repulsion = 14403.402552 eV Total energy + Delta-G solvation = -2817.181856 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.19079 -38.29393 -37.28429 -34.76588 -32.50703 -31.46627 -29.85769 -29.08748 -26.27568 -24.67599 -23.36713 -22.14112 -21.39550 -18.88461 -18.19577 -16.91667 -16.20034 -15.60829 -15.53974 -14.69841 -14.43788 -14.16476 -13.97498 -13.68329 -12.89816 -12.60118 -12.56147 -12.04337 -11.77456 -11.60394 -11.30365 -11.03514 -10.73289 -10.47116 -10.36833 -9.93894 -9.20994 -9.15533 -8.51092 -8.16446 -7.93831 -7.48323 -6.35660 -3.93971 1.34205 1.66706 2.77697 3.05804 3.10134 3.11672 3.14572 3.97888 4.04043 4.28708 4.73079 4.89745 5.04906 5.17873 5.28575 5.44200 5.51927 5.80448 6.00709 6.22631 6.32296 6.60151 6.73475 6.86633 7.01672 7.22331 7.29686 7.34140 7.48365 7.59770 7.70978 8.28603 8.35383 9.00345 9.51272 9.91510 10.57477 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.028107 B = 0.007791 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.946033 B = 3592.807854 C = 4311.926746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.435 5.435 3 C -0.334 4.334 4 H 0.107 0.893 5 C 0.034 3.966 6 N -0.872 5.872 7 Si 0.924 3.076 8 H -0.269 1.269 9 H -0.278 1.278 10 H -0.280 1.280 11 C 0.513 3.487 12 O -0.611 6.611 13 C -0.163 4.163 14 C 0.097 3.903 15 N -0.575 5.575 16 H 0.417 0.583 17 C 0.273 3.727 18 N -0.503 5.503 19 C 0.124 3.876 20 C -0.209 4.209 21 C -0.018 4.018 22 C -0.113 4.113 23 H 0.036 0.964 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.267 0.733 27 H 0.193 0.807 28 H 0.155 0.845 29 H 0.133 0.867 30 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.970 -3.276 1.929 9.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.152 5.152 3 C -0.462 4.462 4 H 0.124 0.876 5 C -0.170 4.170 6 N -0.511 5.511 7 Si 0.750 3.250 8 H -0.193 1.193 9 H -0.204 1.204 10 H -0.206 1.206 11 C 0.302 3.698 12 O -0.500 6.500 13 C -0.173 4.173 14 C -0.032 4.032 15 N -0.181 5.181 16 H 0.254 0.746 17 C 0.041 3.959 18 N -0.216 5.216 19 C -0.041 4.041 20 C -0.230 4.230 21 C -0.045 4.045 22 C -0.121 4.121 23 H 0.055 0.945 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.210 0.790 28 H 0.172 0.828 29 H 0.151 0.849 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.370 -3.217 1.586 10.033 hybrid contribution -0.100 1.083 0.001 1.087 sum 9.270 -2.134 1.587 9.644 Atomic orbital electron populations 1.21596 0.79378 0.97641 1.03473 1.43613 1.06304 1.04624 1.60624 1.20058 0.94501 0.83404 1.48270 0.87571 1.25352 0.95723 0.99630 0.96334 1.70227 1.06343 1.27434 1.47073 0.85907 0.79445 0.81442 0.78174 1.19324 1.20420 1.20550 1.16881 0.85062 0.83866 0.83980 1.90625 1.69377 1.31510 1.58459 1.20123 0.94035 0.99882 1.03288 1.22444 0.80887 0.99317 1.00591 1.41315 1.08537 1.31098 1.37165 0.74575 1.18349 0.90250 0.92703 0.94644 1.66425 1.35142 1.09963 1.10078 1.22275 0.96138 0.92258 0.93475 1.21801 0.93436 1.03633 1.04168 1.21030 0.99966 0.91706 0.91774 1.19591 0.92913 0.99166 1.00429 0.94549 0.92300 0.90906 0.92185 0.79017 0.82752 0.84923 0.84603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.06 8.87 59.84 0.53 3.59 16 2 N -0.44 -11.18 3.02 -123.62 -0.37 -11.55 16 3 C -0.33 -8.24 8.59 -14.99 -0.13 -8.37 16 4 H 0.11 2.44 4.77 -52.48 -0.25 2.19 16 5 C 0.03 0.82 5.46 -17.45 -0.10 0.73 16 6 N -0.87 -22.13 9.51 55.50 0.53 -21.60 16 7 Si 0.92 18.68 29.56 -169.99 -5.02 13.65 16 8 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 9 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 10 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 11 C 0.51 13.00 7.55 -12.78 -0.10 12.90 16 12 O -0.61 -16.89 16.45 5.19 0.09 -16.80 16 13 C -0.16 -3.56 5.51 -103.36 -0.57 -4.13 16 14 C 0.10 1.75 9.48 -16.53 -0.16 1.59 16 15 N -0.58 -9.16 5.97 -11.94 -0.07 -9.23 16 16 H 0.42 5.06 8.96 -40.82 -0.37 4.69 16 17 C 0.27 4.96 8.41 -155.51 -1.31 3.66 16 18 N -0.50 -8.43 10.39 -12.29 -0.13 -8.56 16 19 C 0.12 1.75 11.14 -17.52 -0.20 1.55 16 20 C -0.21 -2.97 10.11 -39.42 -0.40 -3.37 16 21 C -0.02 -0.33 10.21 -39.13 -0.40 -0.73 16 22 C -0.11 -2.28 6.38 -104.93 -0.67 -2.95 16 23 H 0.04 0.89 6.92 -51.93 -0.36 0.53 16 24 H 0.06 1.50 7.34 -51.92 -0.38 1.12 16 25 H 0.07 1.87 6.78 -51.93 -0.35 1.52 16 26 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 27 H 0.19 3.16 7.07 -52.49 -0.37 2.79 16 28 H 0.16 1.56 8.06 -52.49 -0.42 1.13 16 29 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.14 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 262.27 15.07 3.95 3.95 Total: -1.00 -30.97 262.27 -7.00 -37.98 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -2.48 Total: 7.70 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -3.49 Total: 4.46 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.04 Total: -50.94 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: 0.09 Total: -16.80 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.02 Total: 13.65 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.97 -7.00 -37.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334339867.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.373 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds