Wall clock time and date at job start Sun Mar 29 2020 23:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36110 * 126.31028 * 2 1 4 4 N 1.30096 * 110.03933 * 180.02562 * 3 2 1 5 5 C 1.35852 * 109.53038 * 359.97438 * 4 3 2 6 6 C 1.39749 * 133.50167 * 179.97438 * 5 4 3 7 7 C 1.37850 * 120.12342 * 179.97438 * 6 5 4 8 8 C 1.38312 * 120.73119 * 0.02562 * 7 6 5 9 9 C 1.39473 * 120.27349 * 359.75782 * 8 7 6 10 10 C 1.47405 * 120.25328 * 180.02562 * 9 8 7 11 11 O 1.21632 * 120.00376 * 141.01674 * 10 9 8 12 12 N 1.34777 * 120.00153 * 321.01255 * 10 9 8 13 13 C 1.36878 * 120.00294 * 179.97438 * 12 10 9 14 14 H 1.08003 * 120.00251 * 0.02562 * 13 12 10 15 15 C 1.39036 * 120.00321 * 180.02562 * 13 12 10 16 16 N 1.31374 * 119.99806 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00032 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47396 * 89.99773 * 17 15 13 19 19 H 1.48498 * 109.46929 * 209.99429 * 17 15 13 20 20 H 1.48499 * 109.47432 * 329.99793 * 17 15 13 21 21 C 1.37508 * 126.31033 * 179.97438 * 2 1 3 22 22 H 1.09001 * 109.47327 * 264.10915 * 1 2 3 23 23 H 1.09001 * 109.47284 * 24.10944 * 1 2 3 24 24 H 1.08993 * 109.47179 * 144.11427 * 1 2 3 25 25 H 1.08003 * 124.98058 * 359.97438 * 3 2 1 26 26 H 1.08004 * 119.93469 * 0.02931 * 6 5 4 27 27 H 1.07996 * 119.63712 * 180.02562 * 7 6 5 28 28 H 1.07997 * 119.86389 * 180.02562 * 8 7 6 29 29 H 0.97001 * 120.00235 * 0.02562 * 12 10 9 30 30 H 0.97000 * 119.99821 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2710 1.0968 0.0000 4 7 3.5198 0.7323 -0.0005 5 6 3.5971 -0.6240 -0.0004 6 6 4.6638 -1.5268 -0.0012 7 6 4.4216 -2.8839 -0.0002 8 6 3.1270 -3.3708 0.0011 9 6 2.0449 -2.4909 0.0065 10 6 0.6654 -3.0103 0.0085 11 8 -0.1907 -2.4604 0.6750 12 7 0.3525 -4.0946 -0.7283 13 6 -0.9284 -4.5773 -0.7261 14 1 -1.6885 -4.0890 -0.1342 15 6 -1.2510 -5.6962 -1.4857 16 7 -0.3266 -6.2899 -2.2061 17 14 -2.9992 -6.3544 -1.4832 18 1 -3.7755 -5.7016 -2.5679 19 1 -2.9757 -7.8224 -1.7059 20 1 -3.6362 -6.0624 -0.1740 21 6 2.2792 -1.1081 0.0005 22 1 -0.3634 -0.1055 1.0222 23 1 -0.3634 0.9380 -0.4198 24 1 -0.3633 -0.8325 -0.6023 25 1 1.9245 2.1198 -0.0004 26 1 5.6798 -1.1606 -0.0017 27 1 5.2518 -3.5745 -0.0004 28 1 2.9534 -4.4367 0.0023 29 1 1.0352 -4.5335 -1.2596 30 1 -0.5516 -7.0707 -2.7358 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334369423.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:38:18 Heat of formation + Delta-G solvation = 18.196228 kcal Electronic energy + Delta-G solvation = -17144.342822 eV Core-core repulsion = 14325.504474 eV Total energy + Delta-G solvation = -2818.838348 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.12832 -40.18792 -37.99362 -36.14884 -34.90593 -33.42289 -31.57573 -30.35631 -27.96514 -27.07204 -24.69374 -23.10727 -22.69648 -20.69978 -19.97641 -18.41434 -17.95263 -17.49045 -16.83635 -16.72390 -16.06954 -15.87083 -15.66654 -14.87617 -14.65449 -14.47218 -14.07605 -13.63416 -13.34885 -13.01654 -12.84989 -12.73874 -12.48181 -12.46910 -12.13667 -11.52306 -11.29175 -11.26539 -10.38264 -10.09551 -9.37294 -9.04867 -8.55414 -6.01755 -0.23953 0.52423 1.34866 1.40563 1.53423 1.66478 1.79045 2.14010 2.25298 2.85434 3.07995 3.20160 3.35532 3.72493 3.96899 4.07614 4.18526 4.41076 4.44824 4.45570 4.58277 4.79183 4.86555 5.18913 5.32609 5.38671 5.47252 5.53494 5.86068 5.91037 6.23944 6.47958 6.83930 7.00590 7.41922 7.96186 8.61592 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.032849 B = 0.006741 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.183209 B = 4152.499180 C = 4826.896942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.490 5.490 3 C 0.264 3.736 4 N -0.524 5.524 5 C 0.018 3.982 6 C -0.059 4.059 7 C -0.119 4.119 8 C -0.086 4.086 9 C -0.121 4.121 10 C 0.470 3.530 11 O -0.623 6.623 12 N -0.549 5.549 13 C -0.336 4.336 14 H 0.087 0.913 15 C -0.009 4.009 16 N -0.912 5.912 17 Si 0.998 3.002 18 H -0.269 1.269 19 H -0.270 1.270 20 H -0.270 1.270 21 C 0.053 3.947 22 H 0.067 0.933 23 H 0.121 0.879 24 H 0.057 0.943 25 H 0.263 0.737 26 H 0.157 0.843 27 H 0.172 0.828 28 H 0.136 0.864 29 H 0.396 0.604 30 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.061 8.516 1.138 10.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.178 5.178 3 C -0.021 4.021 4 N -0.244 5.244 5 C -0.100 4.100 6 C -0.079 4.079 7 C -0.139 4.139 8 C -0.107 4.107 9 C -0.128 4.128 10 C 0.259 3.741 11 O -0.512 6.512 12 N -0.183 5.183 13 C -0.465 4.465 14 H 0.105 0.895 15 C -0.210 4.210 16 N -0.552 5.552 17 Si 0.821 3.179 18 H -0.194 1.194 19 H -0.194 1.194 20 H -0.195 1.195 21 C -0.059 4.059 22 H 0.086 0.914 23 H 0.139 0.861 24 H 0.076 0.924 25 H 0.279 0.721 26 H 0.175 0.825 27 H 0.190 0.810 28 H 0.154 0.846 29 H 0.230 0.770 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.012 9.210 1.426 11.090 hybrid contribution -1.446 -1.282 -0.272 1.951 sum 4.566 7.928 1.153 9.222 Atomic orbital electron populations 1.22095 0.74489 1.04266 1.03711 1.45419 1.08522 1.05293 1.58550 1.26324 0.84453 0.94636 0.96686 1.70476 1.19561 1.10097 1.24233 1.19455 0.92033 0.91103 1.07366 1.20712 0.97880 0.91367 0.97894 1.21155 0.96443 0.95122 1.01210 1.21384 0.92021 0.99188 0.98122 1.19109 0.94051 0.90799 1.08793 1.18227 0.88331 0.83159 0.84402 1.90547 1.51317 1.61642 1.47696 1.41895 1.11110 1.24924 1.40380 1.19768 0.87453 1.11403 1.27866 0.89519 1.26169 1.03948 0.96002 0.94904 1.69663 1.35418 1.21618 1.28464 0.84857 0.76555 0.77648 0.78868 1.19444 1.19434 1.19468 1.18950 0.92264 0.88728 1.05953 0.91421 0.86051 0.92380 0.72141 0.82496 0.81024 0.84647 0.76955 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.06 9.34 127.77 1.19 4.25 16 2 N -0.49 -16.68 3.19 -542.84 -1.73 -18.41 16 3 C 0.26 7.16 12.50 180.04 2.25 9.41 16 4 N -0.52 -17.03 11.28 -192.02 -2.17 -19.19 16 5 C 0.02 0.65 7.22 39.41 0.28 0.93 16 6 C -0.06 -1.70 10.09 22.54 0.23 -1.47 16 7 C -0.12 -3.27 9.99 22.20 0.22 -3.05 16 8 C -0.09 -3.03 9.33 22.59 0.21 -2.82 16 9 C -0.12 -5.14 5.77 -20.07 -0.12 -5.26 16 10 C 0.47 23.50 6.61 86.66 0.57 24.07 16 11 O -0.62 -33.70 12.75 -4.13 -0.05 -33.75 16 12 N -0.55 -28.70 5.20 -310.00 -1.61 -30.31 16 13 C -0.34 -18.68 9.68 84.10 0.81 -17.86 16 14 H 0.09 5.06 7.15 -2.91 -0.02 5.04 16 15 C -0.01 -0.47 5.50 84.95 0.47 0.00 16 16 N -0.91 -48.32 13.05 21.68 0.28 -48.04 16 17 Si 1.00 41.48 29.55 68.60 2.03 43.51 16 18 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 19 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 20 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 21 C 0.05 2.10 6.74 39.27 0.26 2.36 16 22 H 0.07 2.32 7.69 -2.39 -0.02 2.30 16 23 H 0.12 2.53 8.13 -2.39 -0.02 2.51 16 24 H 0.06 2.34 6.03 -2.39 -0.01 2.33 16 25 H 0.26 3.76 8.06 -2.91 -0.02 3.74 16 26 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 27 H 0.17 3.21 8.06 -2.91 -0.02 3.19 16 28 H 0.14 4.56 7.80 -2.91 -0.02 4.53 16 29 H 0.40 20.04 7.27 -92.71 -0.67 19.37 16 30 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -70.26 265.65 3.65 -66.62 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: 0.51 Total: 29.02 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 6.39 Total: 10.56 kcal Atomic # 7 Polarization: -110.73 SS G_CDS: -5.23 Total: -115.96 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -0.05 Total: -33.75 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -70.26 3.65 -66.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334369423.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.814 kcal (2) G-P(sol) polarization free energy of solvation -70.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds