Wall clock time and date at job start Sun Mar 29 2020 22:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86800 * 120.00216 * 2 1 4 4 H 1.48502 * 109.46770 * 269.99580 * 3 2 1 5 5 H 1.48495 * 109.47331 * 29.99448 * 3 2 1 6 6 H 1.48496 * 109.47191 * 149.99853 * 3 2 1 7 7 C 1.38950 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99879 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00219 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00372 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99766 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00153 * 179.97438 * 10 9 7 13 13 C 1.50699 * 109.46810 * 180.02562 * 12 10 9 14 14 C 1.39687 * 119.09006 * 270.01980 * 13 12 10 15 15 C 1.35652 * 121.72754 * 179.97438 * 14 13 12 16 16 C 1.41133 * 119.53232 * 0.03925 * 15 14 13 17 17 C 1.38244 * 134.81064 * 180.02562 * 16 15 14 18 18 N 1.33991 * 107.90445 * 179.97438 * 17 16 15 19 19 H 0.97001 * 125.02386 * 179.97438 * 18 17 16 20 20 N 1.39958 * 109.95453 * 0.02562 * 18 17 16 21 21 C 1.32064 * 108.96017 * 359.97438 * 20 18 17 22 22 C 1.35629 * 119.09216 * 90.00451 * 13 12 10 23 23 H 0.97002 * 119.99807 * 0.02562 * 1 2 3 24 24 H 0.97007 * 120.00139 * 359.97438 * 9 7 2 25 25 H 1.08997 * 109.46662 * 59.99890 * 12 10 9 26 26 H 1.08998 * 109.47118 * 299.99813 * 12 10 9 27 27 H 1.07999 * 119.13844 * 359.97438 * 14 13 12 28 28 H 1.07996 * 120.23190 * 180.02562 * 15 14 13 29 29 H 1.07994 * 126.05393 * 359.95169 * 17 16 15 30 30 H 1.08002 * 120.20640 * 0.03864 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0462 -1.4001 5 1 1.4457 2.6527 0.6999 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5579 0.0001 12 6 1.2435 -4.8630 0.0011 13 6 2.2228 -6.0084 0.0016 14 6 2.6644 -6.5249 -1.2188 15 6 3.5454 -7.5545 -1.2808 16 6 4.0332 -8.1256 -0.0859 17 6 4.9103 -9.1503 0.2171 18 7 4.9896 -9.2436 1.5514 19 1 5.5367 -9.8835 2.0332 20 7 4.1655 -8.2821 2.1473 21 6 3.5675 -7.5829 1.1999 22 6 2.6513 -6.5092 1.1870 23 1 -0.4850 0.8401 -0.0004 24 1 0.3532 -2.3907 0.0005 25 1 0.6165 -4.9208 -0.8886 26 1 0.6172 -4.9205 0.8914 27 1 2.2948 -6.0932 -2.1372 28 1 3.8711 -7.9347 -2.2377 29 1 5.4379 -9.7669 -0.4954 30 1 2.2924 -6.0901 2.1155 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334375348.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:45 Heat of formation + Delta-G solvation = 51.136398 kcal Electronic energy + Delta-G solvation = -16392.625072 eV Core-core repulsion = 13575.215118 eV Total energy + Delta-G solvation = -2817.409955 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.07947 -38.49136 -36.82310 -33.88481 -32.11504 -31.70930 -31.08966 -28.65639 -27.72863 -24.77282 -23.14320 -21.27491 -20.52046 -19.12713 -18.00005 -17.77026 -16.47160 -15.80670 -15.27034 -14.73700 -14.65155 -14.41999 -13.84943 -13.69986 -13.31193 -12.67312 -12.47472 -11.74010 -11.60289 -11.30167 -11.28950 -11.14645 -10.95409 -10.35669 -10.17584 -10.14728 -10.10849 -9.46478 -8.55595 -8.19724 -7.92045 -7.40390 -6.37337 -3.77884 0.81464 2.06222 2.62659 2.77140 3.21163 3.29556 3.36013 3.96832 4.05788 4.25502 4.42223 4.68990 5.10152 5.23530 5.29150 5.33946 5.40500 5.58861 5.81498 5.85725 6.01449 6.12701 6.36817 6.49342 6.66498 6.74792 7.04681 7.12260 7.14866 7.59704 7.73400 8.10492 8.65908 9.22444 9.59343 10.11242 10.80430 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.048015 B = 0.004507 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.011012 B = 6210.596755 C = 6326.776558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.445 3.555 11 O -0.586 6.586 12 C -0.102 4.102 13 C 0.001 3.999 14 C -0.124 4.124 15 C -0.058 4.058 16 C -0.204 4.204 17 C 0.070 3.930 18 N -0.434 5.434 19 H 0.439 0.561 20 N -0.314 5.314 21 C 0.114 3.886 22 C -0.101 4.101 23 H 0.271 0.729 24 H 0.393 0.607 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.184 0.816 30 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.930 -16.984 -1.555 17.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.231 3.769 11 O -0.470 6.470 12 C -0.143 4.143 13 C -0.004 4.004 14 C -0.144 4.144 15 C -0.078 4.078 16 C -0.214 4.214 17 C -0.086 4.086 18 N -0.134 5.134 19 H 0.283 0.717 20 N -0.143 5.143 21 C -0.039 4.039 22 C -0.123 4.123 23 H 0.081 0.919 24 H 0.226 0.774 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.201 0.799 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.746 -16.965 -0.238 17.618 hybrid contribution 0.101 0.662 -0.638 0.925 sum 4.847 -16.302 -0.876 17.030 Atomic orbital electron populations 1.69613 1.05908 1.28093 1.50752 1.25245 0.95617 0.99652 0.97399 0.85874 0.79260 0.80901 0.78356 1.20433 1.20946 1.19452 1.19715 0.93376 0.82297 1.47446 0.87971 1.41884 1.09217 1.04543 1.64383 1.19736 0.88255 0.84526 0.84413 1.90554 1.13822 1.87211 1.55459 1.20695 0.97253 0.92290 1.04022 1.18912 0.95368 0.93579 0.92511 1.20456 0.99374 0.97092 0.97429 1.20096 0.96427 0.96045 0.95272 1.19650 1.05099 1.01395 0.95228 1.22575 1.00078 0.99601 0.86349 1.46249 1.34583 1.27677 1.04923 0.71714 1.77653 1.12438 1.05754 1.18417 1.20898 0.96567 0.95934 0.90501 1.19624 0.98608 0.95694 0.98332 0.91912 0.77362 0.89116 0.89196 0.86052 0.86110 0.79926 0.85653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.71 13.05 55.50 0.72 -23.99 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.56 -14.43 5.29 -10.96 -0.06 -14.48 16 10 C 0.45 10.64 7.78 -10.98 -0.09 10.56 16 11 O -0.59 -16.31 15.61 5.55 0.09 -16.22 16 12 C -0.10 -1.82 5.77 -29.03 -0.17 -1.99 16 13 C 0.00 0.02 4.33 -105.01 -0.45 -0.43 16 14 C -0.12 -1.97 9.51 -39.97 -0.38 -2.35 16 15 C -0.06 -0.82 10.09 -39.41 -0.40 -1.21 16 16 C -0.20 -2.98 6.33 -105.19 -0.67 -3.65 16 17 C 0.07 0.73 12.08 -16.61 -0.20 0.53 16 18 N -0.43 -4.77 7.18 30.84 0.22 -4.55 16 19 H 0.44 2.88 8.96 -182.70 -1.64 1.25 16 20 N -0.31 -5.05 12.70 33.25 0.42 -4.63 16 21 C 0.11 1.98 7.49 -83.05 -0.62 1.36 16 22 C -0.10 -1.83 9.65 -39.41 -0.38 -2.21 16 23 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 24 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 25 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 26 H 0.09 1.42 8.06 -51.93 -0.42 1.00 16 27 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 28 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 273.61 15.07 4.12 4.12 Total: -1.00 -35.24 273.61 -7.10 -42.34 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -4.00 Total: 8.61 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -3.60 Total: -7.47 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 1.31 Total: -47.65 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.09 Total: -16.22 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -35.24 -7.10 -42.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334375348.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.473 kcal (2) G-P(sol) polarization free energy of solvation -35.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds