Wall clock time and date at job start Sun Mar 29 2020 23:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36916 * 119.99887 * 2 1 4 4 H 1.08000 * 119.99816 * 163.82315 * 3 2 1 5 5 C 1.39000 * 120.00145 * 343.83612 * 3 2 1 6 6 N 1.31393 * 119.99993 * 331.62612 * 5 3 2 7 7 Si 1.86801 * 120.00048 * 151.63026 * 5 3 2 8 8 H 1.48505 * 109.47116 * 94.98657 * 7 5 3 9 9 H 1.48497 * 109.47211 * 214.98638 * 7 5 3 10 10 H 1.48499 * 109.47171 * 334.98993 * 7 5 3 11 11 C 1.34774 * 119.99726 * 180.02562 * 2 1 3 12 12 O 1.21636 * 119.99842 * 185.57949 * 11 2 1 13 13 C 1.47484 * 120.00400 * 5.58060 * 11 2 1 14 14 C 1.36674 * 125.92555 * 186.76516 * 13 11 2 15 15 N 1.36207 * 107.08160 * 179.97438 * 14 13 11 16 16 C 1.36678 * 132.28782 * 179.97438 * 15 14 13 17 17 C 1.34857 * 120.63705 * 179.97438 * 16 15 14 18 18 C 1.40566 * 120.34319 * 0.02562 * 17 16 15 19 19 C 1.35908 * 119.72801 * 359.97438 * 18 17 16 20 20 C 1.37273 * 107.34749 * 0.02562 * 15 14 13 21 21 N 1.32259 * 108.39449 * 359.97438 * 20 15 14 22 22 H 1.08994 * 109.46659 * 214.51679 * 1 2 3 23 23 H 1.09000 * 109.46832 * 334.51653 * 1 2 3 24 24 H 1.09004 * 109.47044 * 94.51603 * 1 2 3 25 25 H 0.97002 * 120.00019 * 180.02562 * 6 5 3 26 26 H 1.07992 * 126.46292 * 0.02562 * 14 13 11 27 27 H 1.07995 * 119.68052 * 0.02562 * 16 15 14 28 28 H 1.08001 * 119.82457 * 180.02562 * 17 16 15 29 29 H 1.07999 * 120.13405 * 180.27383 * 18 17 16 30 30 H 1.08001 * 120.31678 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1857 0.0000 4 1 3.1975 1.2042 0.2606 5 6 1.4958 2.3657 -0.3351 6 7 0.4673 2.3377 -1.1522 7 14 2.0796 3.9914 0.3762 8 1 3.0047 4.6475 -0.5825 9 1 0.9102 4.8741 0.6185 10 1 2.7879 3.7451 1.6578 11 6 2.1389 -1.1672 -0.0005 12 8 3.3509 -1.1698 0.1019 13 6 1.4067 -2.4414 -0.1253 14 6 1.9472 -3.6914 -0.0102 15 7 0.9341 -4.5836 -0.1914 16 6 0.8995 -5.9499 -0.1838 17 6 -0.2579 -6.6093 -0.3940 18 6 -1.4483 -5.8984 -0.6251 19 6 -1.4305 -4.5394 -0.6358 20 6 -0.2118 -3.8617 -0.4154 21 7 0.0904 -2.5749 -0.3721 22 1 -0.3632 -0.8467 0.5823 23 1 -0.3633 0.9277 0.4422 24 1 -0.3633 -0.0809 -1.0245 25 1 0.0113 3.1612 -1.3864 26 1 2.9822 -3.9274 0.1880 27 1 1.8078 -6.5068 -0.0069 28 1 -0.2702 -7.6892 -0.3847 29 1 -2.3742 -6.4298 -0.7886 30 1 -2.3396 -3.9837 -0.8120 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334462728.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:51 Heat of formation + Delta-G solvation = 78.561802 kcal Electronic energy + Delta-G solvation = -17001.738424 eV Core-core repulsion = 14185.517724 eV Total energy + Delta-G solvation = -2816.220700 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.46145 -38.31052 -36.76469 -34.60556 -33.47749 -31.65050 -30.06979 -28.48083 -26.27393 -25.00642 -23.54943 -22.37573 -22.01271 -18.96506 -17.64825 -16.76680 -16.58957 -16.05303 -15.67834 -15.01018 -14.51305 -14.31316 -14.08649 -13.70725 -13.63555 -12.49672 -12.28105 -11.83570 -11.72327 -11.51428 -11.32060 -11.19930 -10.91742 -10.77619 -10.41032 -10.20507 -9.50209 -8.91408 -8.55228 -8.44758 -7.73769 -7.58999 -6.42493 -3.74213 0.80438 1.43626 2.71717 2.77618 3.20751 3.26934 3.35697 3.63178 4.13096 4.36722 4.46100 4.53161 4.80571 4.88184 5.11322 5.16742 5.22435 5.58919 5.73331 5.91690 5.92468 6.15430 6.22614 6.58248 6.73416 6.93242 7.09010 7.26742 7.42215 7.56492 8.06995 8.19718 8.52556 9.19227 9.45140 10.06418 10.61825 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.050808 B = 0.005700 C = 0.005197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.965915 B = 4910.989597 C = 5386.089995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.410 5.410 3 C -0.314 4.314 4 H 0.107 0.893 5 C 0.038 3.962 6 N -0.847 5.847 7 Si 0.917 3.083 8 H -0.277 1.277 9 H -0.281 1.281 10 H -0.266 1.266 11 C 0.496 3.504 12 O -0.597 6.597 13 C 0.053 3.947 14 C -0.052 4.052 15 N -0.366 5.366 16 C 0.057 3.943 17 C -0.152 4.152 18 C -0.116 4.116 19 C -0.070 4.070 20 C 0.206 3.794 21 N -0.459 5.459 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.271 0.729 26 H 0.189 0.811 27 H 0.159 0.841 28 H 0.145 0.855 29 H 0.137 0.863 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.576 -15.213 1.569 16.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.124 5.124 3 C -0.442 4.442 4 H 0.124 0.876 5 C -0.169 4.169 6 N -0.483 5.483 7 Si 0.743 3.257 8 H -0.202 1.202 9 H -0.206 1.206 10 H -0.191 1.191 11 C 0.284 3.716 12 O -0.484 6.484 13 C -0.080 4.080 14 C -0.186 4.186 15 N -0.038 5.038 16 C -0.065 4.065 17 C -0.173 4.173 18 C -0.140 4.140 19 C -0.091 4.091 20 C -0.038 4.038 21 N -0.181 5.181 22 H 0.073 0.927 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.206 0.794 27 H 0.177 0.823 28 H 0.163 0.837 29 H 0.155 0.845 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.621 -14.327 1.435 15.457 hybrid contribution 0.606 0.078 0.219 0.649 sum -5.016 -14.249 1.653 15.196 Atomic orbital electron populations 1.21666 0.79891 0.99861 1.01635 1.43557 1.06348 1.04469 1.58040 1.19726 0.97188 0.82446 1.44873 0.87554 1.25322 0.96600 0.99961 0.95017 1.70186 1.21862 1.29286 1.26975 0.86084 0.78418 0.81080 0.80161 1.20241 1.20617 1.19059 1.16606 0.86102 0.81555 0.87341 1.90602 1.12970 1.86247 1.58578 1.21296 0.89581 0.94652 1.02465 1.22556 0.94083 0.87730 1.14196 1.42789 1.10216 1.05951 1.44891 1.21589 1.00812 0.81186 1.02948 1.20694 0.91604 1.00666 1.04319 1.20919 0.98566 0.93450 1.01049 1.20300 0.94769 0.93780 1.00225 1.21254 0.88192 0.87822 1.06515 1.71313 1.13767 1.12478 1.20561 0.92689 0.92152 0.92719 0.91931 0.79351 0.82335 0.83692 0.84468 0.83355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.86 7.68 59.85 0.46 3.32 16 2 N -0.41 -11.52 3.02 -123.40 -0.37 -11.90 16 3 C -0.31 -9.17 9.30 -15.00 -0.14 -9.30 16 4 H 0.11 3.20 7.39 -52.49 -0.39 2.81 16 5 C 0.04 1.03 4.68 -17.46 -0.08 0.95 16 6 N -0.85 -23.33 11.38 55.50 0.63 -22.70 16 7 Si 0.92 20.72 29.64 -169.99 -5.04 15.69 16 8 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 11 C 0.50 13.56 7.61 -12.49 -0.10 13.47 16 12 O -0.60 -17.62 16.51 5.25 0.09 -17.53 16 13 C 0.05 1.23 6.56 -83.46 -0.55 0.68 16 14 C -0.05 -0.98 11.48 -16.17 -0.19 -1.16 16 15 N -0.37 -5.88 2.93 -62.34 -0.18 -6.06 16 16 C 0.06 0.64 10.93 -16.59 -0.18 0.45 16 17 C -0.15 -1.38 9.98 -39.90 -0.40 -1.77 16 18 C -0.12 -1.13 10.06 -39.54 -0.40 -1.53 16 19 C -0.07 -0.92 10.11 -39.30 -0.40 -1.32 16 20 C 0.21 3.62 7.79 -156.02 -1.22 2.40 16 21 N -0.46 -9.86 8.05 -9.36 -0.08 -9.93 16 22 H 0.05 1.29 5.88 -51.93 -0.31 0.99 16 23 H 0.06 1.54 6.65 -51.93 -0.35 1.20 16 24 H 0.05 1.44 7.99 -51.93 -0.42 1.02 16 25 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 26 H 0.19 3.13 8.06 -52.49 -0.42 2.71 16 27 H 0.16 1.25 8.06 -52.49 -0.42 0.82 16 28 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 29 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 30 H 0.15 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 265.55 15.07 4.00 4.00 Total: -1.00 -34.35 265.55 -6.83 -41.18 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -2.70 Total: 1.07 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: -3.18 Total: 6.18 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: 0.00 Total: -50.59 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: 0.09 Total: -17.53 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.04 Total: 15.69 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -34.35 -6.83 -41.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334462728.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.740 kcal (2) G-P(sol) polarization free energy of solvation -34.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds