Wall clock time and date at job start Sun Mar 29 2020 23:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 115.56390 * 2 1 4 4 C 1.52997 * 117.49492 * 145.69639 * 2 1 3 5 5 H 1.09000 * 117.49925 * 214.97594 * 4 2 1 6 6 C 1.50699 * 117.50338 * 359.97011 * 4 2 1 7 7 O 1.21298 * 119.99805 * 359.91898 * 6 4 2 8 8 N 1.34778 * 120.00347 * 179.91263 * 6 4 2 9 9 C 1.37092 * 120.00008 * 179.97438 * 8 6 4 10 10 H 1.08004 * 120.00103 * 222.63212 * 9 8 6 11 11 C 1.38955 * 120.00258 * 42.63348 * 9 8 6 12 12 N 1.31414 * 119.99894 * 19.22376 * 11 9 8 13 13 Si 1.86796 * 120.00369 * 199.22967 * 11 9 8 14 14 H 1.48503 * 109.47056 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47427 * 119.99660 * 13 11 9 16 16 H 1.48505 * 109.47148 * 239.99856 * 13 11 9 17 17 C 1.46495 * 119.99728 * 0.02562 * 8 6 4 18 18 C 1.52999 * 117.49629 * 183.33006 * 17 8 6 19 19 C 1.52996 * 60.00267 * 252.50709 * 18 17 8 20 20 C 1.52996 * 60.03310 * 107.47279 * 4 2 1 21 21 F 1.39902 * 117.50089 * 107.50135 * 20 4 2 22 22 F 1.39901 * 117.50049 * 252.51627 * 20 4 2 23 23 H 1.08997 * 109.46660 * 274.31091 * 1 2 3 24 24 H 1.09000 * 109.46630 * 34.30364 * 1 2 3 25 25 H 1.08991 * 109.47464 * 154.30885 * 1 2 3 26 26 H 0.96995 * 120.00281 * 174.83670 * 12 11 9 27 27 H 1.08998 * 115.55100 * 329.03729 * 17 8 6 28 28 H 1.08999 * 117.50180 * 359.97438 * 18 17 8 29 29 H 1.09003 * 117.49767 * 145.02061 * 18 17 8 30 30 H 1.09000 * 117.50412 * 252.51404 * 19 18 17 31 31 H 1.09001 * 117.49849 * 107.48533 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2364 -1.1211 0.7649 5 1 3.1715 -0.8754 1.2682 6 6 1.3720 -2.1404 1.4611 7 8 0.1636 -2.0519 1.4032 8 7 1.9415 -3.1505 2.1481 9 6 1.1551 -4.0774 2.7820 10 1 1.4103 -4.4127 3.7764 11 6 0.0296 -4.5858 2.1450 12 7 -0.0860 -4.4899 0.8394 13 14 -1.3192 -5.4052 3.1443 14 1 -0.9505 -5.3861 4.5827 15 1 -2.5950 -4.6706 2.9501 16 1 -1.4839 -6.8109 2.6946 17 6 3.4008 -3.2571 2.2185 18 6 3.9863 -4.4684 2.9471 19 6 4.0568 -3.0817 3.5896 20 6 2.2366 -1.1219 -0.7651 21 9 3.4370 -0.8072 -1.4111 22 9 1.4339 -2.0685 -1.4107 23 1 -0.3632 0.0772 1.0248 24 1 -0.3632 0.8489 -0.5792 25 1 -0.3634 -0.9260 -0.4455 26 1 -0.8340 -4.9099 0.3866 27 1 3.9420 -2.8819 1.3499 28 1 3.2857 -5.1857 3.3745 29 1 4.9129 -4.8904 2.5579 30 1 5.0297 -2.5913 3.6230 31 1 3.4025 -2.8868 4.4393 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334611268.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:36 Heat of formation + Delta-G solvation = -57.668655 kcal Electronic energy + Delta-G solvation = -18798.126960 eV Core-core repulsion = 15525.309677 eV Total energy + Delta-G solvation = -3272.817282 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.097 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.10948 -46.73537 -38.87848 -36.72467 -35.04294 -32.71438 -30.97848 -28.13397 -25.49726 -22.82605 -21.70093 -21.14029 -20.75614 -18.93172 -17.52713 -16.54672 -16.11355 -15.71593 -15.19814 -14.69028 -14.24256 -13.95652 -13.46418 -13.27432 -13.13231 -12.77393 -12.74692 -12.22695 -12.10299 -11.55978 -11.36790 -11.12077 -10.94640 -10.90152 -10.68824 -10.20175 -10.06316 -9.99582 -9.74441 -9.27430 -8.73985 -7.97356 -7.06316 -6.11783 -3.87949 3.22578 3.32823 3.38066 3.40546 3.48171 4.16426 4.36296 4.56845 4.75559 4.81809 5.05604 5.23379 5.30067 5.53657 5.57676 5.66627 5.74398 5.99377 6.06443 6.17069 6.19608 6.30855 6.42453 6.51908 6.70164 6.89478 7.07615 7.59384 8.22077 9.00530 9.10172 9.61072 10.22571 10.95451 Molecular weight = 245.10amu Principal moments of inertia in cm(-1) A = 0.021211 B = 0.011056 C = 0.008476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.737078 B = 2532.054098 C = 3302.721487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.121 4.121 3 H 0.123 0.877 4 C -0.173 4.173 5 H 0.128 0.872 6 C 0.505 3.495 7 O -0.514 6.514 8 N -0.416 5.416 9 C -0.351 4.351 10 H 0.080 0.920 11 C 0.074 3.926 12 N -0.819 5.819 13 Si 0.912 3.088 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.286 1.286 17 C 0.071 3.929 18 C -0.172 4.172 19 C -0.206 4.206 20 C 0.204 3.796 21 F -0.172 7.172 22 F -0.141 7.141 23 H 0.079 0.921 24 H 0.044 0.956 25 H 0.081 0.919 26 H 0.265 0.735 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.082 5.925 -0.046 8.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.140 4.140 3 H 0.141 0.859 4 C -0.196 4.196 5 H 0.146 0.854 6 C 0.291 3.709 7 O -0.391 6.391 8 N -0.136 5.136 9 C -0.477 4.477 10 H 0.098 0.902 11 C -0.138 4.138 12 N -0.452 5.452 13 Si 0.739 3.261 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.212 1.212 17 C -0.036 4.036 18 C -0.209 4.209 19 C -0.245 4.245 20 C 0.167 3.833 21 F -0.152 7.152 22 F -0.121 7.121 23 H 0.098 0.902 24 H 0.063 0.937 25 H 0.100 0.900 26 H 0.075 0.925 27 H 0.119 0.881 28 H 0.126 0.874 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.280 5.945 -0.285 7.956 hybrid contribution -0.175 -0.615 0.130 0.653 sum 5.105 5.330 -0.155 7.382 Atomic orbital electron populations 1.21337 0.89775 1.02229 1.03497 1.23609 0.98764 0.93968 0.97688 0.85949 1.23983 1.02980 1.00900 0.91765 0.85372 1.18447 0.87361 0.81341 0.83711 1.90541 1.13680 1.73741 1.61104 1.42677 1.01086 1.22181 1.47698 1.18897 1.07385 1.22365 0.99090 0.90213 1.25237 0.98683 0.95123 0.94786 1.69876 1.29428 1.38178 1.07700 0.86159 0.81952 0.77949 0.80028 1.19627 1.20630 1.21233 1.21697 0.85374 1.02764 0.93728 1.23069 1.01804 0.91830 1.04236 1.23324 1.01564 1.00890 0.98760 1.20023 0.80713 0.94776 0.87787 1.92968 1.45779 1.92807 1.83668 1.93089 1.71466 1.64751 1.82818 0.90185 0.93737 0.90007 0.92522 0.88119 0.87393 0.89724 0.89724 0.88983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.04 8.40 37.16 0.31 -1.73 16 2 C -0.12 -2.07 6.40 -90.58 -0.58 -2.65 16 3 H 0.12 1.64 8.14 -51.93 -0.42 1.22 16 4 C -0.17 -3.40 4.93 -91.78 -0.45 -3.85 16 5 H 0.13 2.14 7.31 -51.93 -0.38 1.76 16 6 C 0.51 12.51 6.37 -10.98 -0.07 12.44 16 7 O -0.51 -14.23 10.74 5.54 0.06 -14.17 16 8 N -0.42 -10.31 2.85 -107.73 -0.31 -10.62 16 9 C -0.35 -9.40 7.99 -14.93 -0.12 -9.52 16 10 H 0.08 2.07 7.18 -52.48 -0.38 1.69 16 11 C 0.07 2.03 4.35 -17.47 -0.08 1.96 16 12 N -0.82 -23.98 11.66 55.50 0.65 -23.33 16 13 Si 0.91 21.62 29.60 -169.99 -5.03 16.59 16 14 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 16 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 17 C 0.07 1.42 5.62 -67.93 -0.38 1.04 16 18 C -0.17 -3.09 9.79 -26.73 -0.26 -3.35 16 19 C -0.21 -3.47 10.36 -26.73 -0.28 -3.75 16 20 C 0.20 4.00 5.14 -26.70 -0.14 3.86 16 21 F -0.17 -3.08 17.60 2.25 0.04 -3.04 16 22 F -0.14 -3.28 16.03 2.25 0.04 -3.24 16 23 H 0.08 1.55 7.25 -51.93 -0.38 1.18 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.08 1.79 6.22 -51.93 -0.32 1.47 16 26 H 0.26 7.45 8.32 -40.82 -0.34 7.11 16 27 H 0.10 1.88 7.12 -51.93 -0.37 1.51 16 28 H 0.11 2.13 6.69 -51.93 -0.35 1.78 16 29 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 269.94 15.07 4.07 4.07 Total: -1.00 -31.03 269.94 -5.95 -36.98 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -3.42 Total: 2.32 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -2.04 Total: -5.56 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.34 Total: -33.95 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.06 Total: -14.17 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 0.08 Total: -6.28 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.03 -5.95 -36.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334611268.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.688 kcal (2) G-P(sol) polarization free energy of solvation -31.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds