Wall clock time and date at job start Sun Mar 29 2020 22:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86799 * 119.99654 * 2 1 4 4 H 1.48500 * 109.47020 * 270.00319 * 3 2 1 5 5 H 1.48506 * 109.47351 * 30.00247 * 3 2 1 6 6 H 1.48497 * 109.47076 * 150.00341 * 3 2 1 7 7 C 1.38946 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00361 * 0.02562 * 7 2 1 9 9 N 1.37099 * 119.99913 * 179.97438 * 7 2 1 10 10 C 1.34772 * 120.00319 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99789 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00326 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.47159 * 179.97438 * 12 10 9 14 14 C 1.33994 * 125.02161 * 125.00154 * 13 12 10 15 15 C 1.38239 * 107.90850 * 179.73254 * 14 13 12 16 16 C 1.41129 * 134.82115 * 180.02562 * 15 14 13 17 17 C 1.35657 * 119.53992 * 180.02562 * 16 15 14 18 18 C 1.39679 * 121.72453 * 359.97438 * 17 16 15 19 19 C 1.35644 * 121.81877 * 0.02562 * 18 17 16 20 20 C 1.41151 * 119.59359 * 359.97438 * 19 18 17 21 21 N 1.32059 * 134.67945 * 180.02562 * 20 19 18 22 22 H 0.97001 * 120.00603 * 359.97438 * 1 2 3 23 23 H 0.97003 * 119.99845 * 0.02562 * 9 7 2 24 24 H 1.08997 * 109.47173 * 59.99780 * 12 10 9 25 25 H 1.09000 * 109.46801 * 299.99830 * 12 10 9 26 26 H 1.07999 * 126.04338 * 359.74942 * 14 13 12 27 27 H 1.08001 * 120.22739 * 0.02562 * 16 15 14 28 28 H 1.07993 * 119.13777 * 179.97438 * 17 16 15 29 29 H 1.07994 * 119.09358 * 179.97438 * 18 17 16 30 30 H 1.07993 * 120.20354 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4954 2.0465 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5456 1.4403 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0014 9 7 3.3798 -1.2033 -0.0011 10 6 4.0538 -2.3704 -0.0021 11 8 3.4473 -3.4208 -0.0031 12 6 5.5607 -2.3704 -0.0021 13 7 6.0491 -3.7515 -0.0027 14 6 6.8989 -4.2663 -0.9018 15 6 7.1240 -5.5881 -0.5657 16 6 7.9009 -6.6341 -1.1081 17 6 7.8941 -7.8517 -0.5101 18 6 7.1357 -8.1031 0.6356 19 6 6.3669 -7.1438 1.2091 20 6 6.3250 -5.8523 0.6412 21 7 5.7015 -4.7268 0.9390 22 1 -0.4851 0.8400 0.0004 23 1 3.8648 -0.3632 -0.0007 24 1 5.9241 -1.8573 0.8883 25 1 5.9240 -1.8557 -0.8917 26 1 7.3315 -3.7412 -1.7406 27 1 8.4967 -6.4662 -1.9931 28 1 8.4906 -8.6475 -0.9309 29 1 7.1614 -9.0885 1.0767 30 1 5.7912 -7.3667 2.0951 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334639429.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:22 Heat of formation + Delta-G solvation = 44.442639 kcal Electronic energy + Delta-G solvation = -16468.809878 eV Core-core repulsion = 13651.109660 eV Total energy + Delta-G solvation = -2817.700218 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.20467 -40.28108 -38.05597 -36.12780 -34.01327 -33.57465 -32.59669 -29.69890 -29.17297 -26.64582 -23.97086 -22.81990 -21.58496 -21.36850 -20.46665 -18.21366 -17.97955 -17.64912 -16.89698 -16.60645 -16.19130 -15.63206 -15.28515 -14.87998 -14.81677 -14.50053 -14.18379 -13.89506 -13.63176 -12.97827 -12.70784 -12.47466 -12.42855 -12.31064 -12.00916 -11.57873 -11.22966 -11.07757 -10.64514 -10.33910 -9.51126 -8.50060 -8.46669 -6.10448 -0.20237 0.99417 1.28707 1.33917 1.35534 1.45342 1.60879 1.79497 2.20693 2.67649 3.01965 3.08260 3.35621 3.77954 3.97170 4.05562 4.15343 4.25078 4.30527 4.49174 4.61276 4.72393 4.93596 5.27510 5.46014 5.63068 5.66816 5.75302 5.83072 5.93251 6.16871 6.49681 6.77821 6.78324 7.26036 7.82596 8.70954 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.055902 B = 0.004692 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.754141 B = 5966.438805 C = 6245.339069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.970 3.030 4 H -0.251 1.251 5 H -0.277 1.277 6 H -0.225 1.225 7 C -0.334 4.334 8 H 0.048 0.952 9 N -0.577 5.577 10 C 0.432 3.568 11 O -0.609 6.609 12 C 0.115 3.885 13 N -0.311 5.311 14 C 0.090 3.910 15 C -0.237 4.237 16 C -0.036 4.036 17 C -0.173 4.173 18 C -0.068 4.068 19 C -0.144 4.144 20 C 0.061 3.939 21 N -0.343 5.343 22 H 0.281 0.719 23 H 0.395 0.605 24 H 0.140 0.860 25 H 0.181 0.819 26 H 0.240 0.760 27 H 0.158 0.842 28 H 0.154 0.846 29 H 0.152 0.848 30 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.176 -4.329 -3.861 22.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.213 4.213 3 Si 0.789 3.211 4 H -0.175 1.175 5 H -0.202 1.202 6 H -0.148 1.148 7 C -0.463 4.463 8 H 0.066 0.934 9 N -0.219 5.219 10 C 0.218 3.782 11 O -0.493 6.493 12 C -0.009 4.009 13 N -0.085 5.085 14 C -0.066 4.066 15 C -0.247 4.247 16 C -0.056 4.056 17 C -0.193 4.193 18 C -0.090 4.090 19 C -0.165 4.165 20 C -0.092 4.092 21 N -0.170 5.170 22 H 0.091 0.909 23 H 0.232 0.768 24 H 0.158 0.842 25 H 0.198 0.802 26 H 0.256 0.744 27 H 0.175 0.825 28 H 0.172 0.828 29 H 0.169 0.831 30 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 20.655 -4.155 -3.002 21.281 hybrid contribution -0.376 0.513 -0.133 0.650 sum 20.278 -3.642 -3.135 20.840 Atomic orbital electron populations 1.69811 1.08443 1.29589 1.49405 1.26225 0.96503 1.03049 0.95476 0.85307 0.79586 0.75925 0.80305 1.17465 1.20209 1.14812 1.18938 0.81345 0.94880 1.51178 0.93399 1.41839 1.05803 1.07201 1.67071 1.20811 0.90613 0.83903 0.82824 1.90662 1.70869 1.33011 1.54763 1.21936 0.90707 0.78397 1.09873 1.48232 1.30765 1.10162 1.19301 1.23534 0.93422 0.93980 0.95631 1.20069 1.08248 0.95610 1.00749 1.20649 0.95309 0.90810 0.98854 1.20899 1.02824 0.98079 0.97466 1.21002 0.93856 0.98829 0.95313 1.20093 1.04253 0.89893 1.02304 1.21567 0.96155 0.94469 0.97028 1.77824 1.25150 0.98478 1.15547 0.90913 0.76805 0.84239 0.80186 0.74431 0.82479 0.82834 0.83070 0.86557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.05 13.96 21.66 0.30 -55.75 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 3 Si 0.97 36.95 27.74 68.60 1.90 38.85 16 4 H -0.25 -8.84 7.11 99.48 0.71 -8.13 16 5 H -0.28 -10.66 7.11 99.48 0.71 -9.95 16 6 H -0.23 -6.94 6.52 99.48 0.65 -6.29 16 7 C -0.33 -19.54 10.16 84.04 0.85 -18.69 16 8 H 0.05 3.41 7.39 -2.92 -0.02 3.39 16 9 N -0.58 -26.25 5.09 -307.00 -1.56 -27.81 16 10 C 0.43 19.41 7.80 87.66 0.68 20.09 16 11 O -0.61 -35.81 15.25 -3.07 -0.05 -35.85 16 12 C 0.11 3.23 6.93 85.63 0.59 3.83 16 13 N -0.31 -10.43 3.35 -350.09 -1.17 -11.60 16 14 C 0.09 2.25 11.45 84.36 0.97 3.22 16 15 C -0.24 -6.87 6.33 -20.23 -0.13 -7.00 16 16 C -0.04 -0.77 10.09 22.38 0.23 -0.54 16 17 C -0.17 -3.44 9.90 22.02 0.22 -3.22 16 18 C -0.07 -1.58 9.89 22.02 0.22 -1.36 16 19 C -0.14 -4.58 10.08 22.38 0.23 -4.36 16 20 C 0.06 2.30 7.49 42.16 0.32 2.61 16 21 N -0.34 -14.75 11.56 -48.70 -0.56 -15.31 16 22 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 23 H 0.40 13.98 5.76 -92.71 -0.53 13.44 16 24 H 0.14 3.13 8.14 -2.39 -0.02 3.11 16 25 H 0.18 2.76 8.04 -2.39 -0.02 2.74 16 26 H 0.24 2.83 8.06 -2.91 -0.02 2.81 16 27 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 28 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 29 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 30 H 0.12 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -91.62 271.23 4.08 -87.54 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: 0.58 Total: 25.62 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: 4.64 Total: -5.68 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -3.00 Total: -110.47 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -0.05 Total: -35.85 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 1.90 Total: 38.85 kcal Total: -91.62 4.08 -87.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334639429.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.985 kcal (2) G-P(sol) polarization free energy of solvation -91.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds