Wall clock time and date at job start Sun Mar 29 2020 23:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36814 * 120.00104 * 2 1 4 4 H 1.07999 * 119.99836 * 185.22232 * 3 2 1 5 5 C 1.39044 * 120.00326 * 5.22739 * 3 2 1 6 6 N 1.31372 * 119.99669 * 5.23196 * 5 3 2 7 7 Si 1.86801 * 120.00140 * 185.23112 * 5 3 2 8 8 H 1.48506 * 109.47073 * 89.99988 * 7 5 3 9 9 H 1.48500 * 109.47004 * 209.99740 * 7 5 3 10 10 H 1.48499 * 109.47173 * 329.99889 * 7 5 3 11 11 C 1.34775 * 119.99777 * 179.97438 * 2 1 3 12 12 O 1.21700 * 120.00180 * 185.70578 * 11 2 1 13 13 C 1.47006 * 120.00099 * 5.70442 * 11 2 1 14 14 C 1.38725 * 120.73361 * 54.63233 * 13 11 2 15 15 C 1.38874 * 121.35038 * 179.97438 * 14 13 11 16 16 C 1.35871 * 122.60345 * 0.05416 * 15 14 13 17 17 C 1.40847 * 120.57012 * 359.96484 * 16 15 14 18 18 C 1.38427 * 134.88537 * 179.97438 * 17 16 15 19 19 N 1.33919 * 107.83576 * 179.97438 * 18 17 16 20 20 H 0.97003 * 125.02675 * 180.02562 * 19 18 17 21 21 N 1.39979 * 109.95294 * 0.02562 * 19 18 17 22 22 C 1.31455 * 109.02338 * 359.97438 * 21 19 18 23 23 H 1.09000 * 109.47436 * 175.11520 * 1 2 3 24 24 H 1.09004 * 109.47110 * 295.12157 * 1 2 3 25 25 H 1.09002 * 109.47189 * 55.11710 * 1 2 3 26 26 H 0.97002 * 119.99408 * 180.02562 * 6 5 3 27 27 H 1.07996 * 119.32277 * 0.02562 * 14 13 11 28 28 H 1.07998 * 118.69185 * 180.02562 * 15 14 13 29 29 H 1.07997 * 119.70991 * 180.23923 * 16 15 14 30 30 H 1.08003 * 126.08471 * 0.04319 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1848 0.0000 4 1 3.2257 1.1867 -0.0851 5 6 1.4583 2.3865 0.1097 6 7 0.1610 2.3818 0.3165 7 14 2.3749 4.0076 -0.0369 8 1 2.3975 4.4367 -1.4584 9 1 1.6888 5.0399 0.7810 10 1 3.7671 3.8348 0.4502 11 6 2.1388 -1.1672 0.0005 12 8 3.3513 -1.1699 0.1053 13 6 1.4092 -2.4372 -0.1255 14 6 0.5448 -2.6558 -1.1882 15 6 -0.1504 -3.8508 -1.3201 16 6 -0.0317 -4.8691 -0.4284 17 6 0.8199 -4.7489 0.6870 18 6 1.1595 -5.5685 1.7496 19 7 2.0370 -4.9063 2.5144 20 1 2.4393 -5.2515 3.3267 21 7 2.2878 -3.6421 1.9683 22 6 1.5796 -3.5016 0.8697 23 1 -0.3634 -1.0239 -0.0875 24 1 -0.3633 0.4363 0.9305 25 1 -0.3634 0.5877 -0.8430 26 1 -0.3210 3.2202 0.3926 27 1 0.4105 -1.8812 -1.9286 28 1 -0.8119 -3.9753 -2.1646 29 1 -0.5918 -5.7801 -0.5787 30 1 0.7844 -6.5653 1.9293 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334816551.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:16 Heat of formation + Delta-G solvation = 84.157623 kcal Electronic energy + Delta-G solvation = -17140.146398 eV Core-core repulsion = 14324.168351 eV Total energy + Delta-G solvation = -2815.978047 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.90989 -38.43177 -36.30843 -34.59022 -31.88637 -31.37159 -30.33493 -28.58655 -26.21201 -24.82382 -23.69835 -21.48063 -21.28546 -18.81579 -17.73903 -16.94902 -16.70232 -15.87082 -15.13407 -14.61380 -14.31107 -14.22551 -13.95939 -13.25764 -12.96910 -12.58978 -11.93269 -11.76082 -11.45759 -11.41318 -11.09932 -10.91149 -10.68044 -10.33819 -10.17138 -10.14095 -9.88654 -9.02183 -8.47917 -8.30559 -7.80412 -7.21800 -6.21767 -3.74041 0.79434 2.15575 2.63250 2.88816 3.19503 3.26632 3.33490 3.84913 4.10995 4.29774 4.53402 4.69778 5.03928 5.20969 5.31027 5.49498 5.52342 5.70719 5.87729 6.01545 6.37509 6.54769 6.69273 6.77168 6.91016 7.16177 7.18020 7.26140 7.48529 7.59331 7.89568 8.11847 8.54429 9.23458 9.48287 10.06589 10.71212 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.036678 B = 0.006545 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.217458 B = 4277.340773 C = 4648.252810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.434 5.434 3 C -0.292 4.292 4 H 0.106 0.894 5 C 0.024 3.976 6 N -0.882 5.882 7 Si 0.934 3.066 8 H -0.277 1.277 9 H -0.283 1.283 10 H -0.269 1.269 11 C 0.474 3.526 12 O -0.586 6.586 13 C -0.057 4.057 14 C -0.073 4.073 15 C -0.143 4.143 16 C -0.057 4.057 17 C -0.207 4.207 18 C 0.068 3.932 19 N -0.436 5.436 20 H 0.440 0.560 21 N -0.278 5.278 22 C 0.129 3.871 23 H 0.033 0.967 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.266 0.734 27 H 0.131 0.869 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.010 -13.882 0.407 14.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.151 5.151 3 C -0.420 4.420 4 H 0.124 0.876 5 C -0.178 4.178 6 N -0.523 5.523 7 Si 0.760 3.240 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.193 1.193 11 C 0.263 3.737 12 O -0.472 6.472 13 C -0.063 4.063 14 C -0.097 4.097 15 C -0.163 4.163 16 C -0.077 4.077 17 C -0.217 4.217 18 C -0.088 4.088 19 N -0.136 5.136 20 H 0.284 0.716 21 N -0.104 5.104 22 C -0.028 4.028 23 H 0.051 0.949 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.149 0.851 28 H 0.139 0.861 29 H 0.137 0.863 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.705 -13.079 1.308 13.657 hybrid contribution -0.231 0.195 -0.070 0.310 sum -3.935 -12.884 1.238 13.528 Atomic orbital electron populations 1.21939 0.80087 0.97272 1.04333 1.43655 1.06258 1.04564 1.60597 1.19874 0.93746 0.81965 1.46453 0.87621 1.25377 0.95883 0.99847 0.96677 1.70168 1.06950 1.27223 1.47960 0.85798 0.79447 0.80476 0.78265 1.20260 1.20859 1.19320 1.17498 0.87321 0.82718 0.86170 1.90647 1.13540 1.86577 1.56459 1.20203 0.98773 0.93451 0.93907 1.21118 0.94389 0.97390 0.96757 1.20304 1.01932 0.93778 1.00248 1.20039 0.96736 0.98514 0.92423 1.19581 1.06792 0.95282 1.00031 1.22586 0.94913 0.98491 0.92800 1.46446 1.32641 1.12437 1.22111 0.71606 1.77724 1.24067 0.95888 1.12727 1.21732 0.94249 0.93911 0.92932 0.94886 0.90907 0.91761 0.92297 0.85127 0.86109 0.86345 0.79853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.59 8.26 59.85 0.49 3.08 16 2 N -0.43 -11.94 3.02 -123.58 -0.37 -12.31 16 3 C -0.29 -8.50 9.55 -15.03 -0.14 -8.64 16 4 H 0.11 3.21 7.20 -52.49 -0.38 2.83 16 5 C 0.02 0.66 5.42 -17.45 -0.09 0.56 16 6 N -0.88 -23.69 9.52 55.50 0.53 -23.16 16 7 Si 0.93 21.22 29.56 -169.99 -5.02 16.20 16 8 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 11 C 0.47 12.94 7.13 -12.71 -0.09 12.85 16 12 O -0.59 -18.14 16.71 5.19 0.09 -18.05 16 13 C -0.06 -1.27 4.85 -102.74 -0.50 -1.77 16 14 C -0.07 -1.34 7.50 -39.17 -0.29 -1.63 16 15 C -0.14 -2.07 9.83 -40.19 -0.39 -2.46 16 16 C -0.06 -0.76 10.02 -39.44 -0.40 -1.16 16 17 C -0.21 -3.25 6.34 -105.21 -0.67 -3.92 16 18 C 0.07 0.80 12.08 -16.57 -0.20 0.60 16 19 N -0.44 -5.89 7.18 30.86 0.22 -5.67 16 20 H 0.44 3.96 8.96 -182.69 -1.64 2.32 16 21 N -0.28 -5.72 12.67 34.36 0.44 -5.28 16 22 C 0.13 2.71 7.49 -80.98 -0.61 2.10 16 23 H 0.03 0.70 4.81 -51.93 -0.25 0.45 16 24 H 0.07 1.88 6.88 -51.93 -0.36 1.52 16 25 H 0.06 1.57 7.24 -51.93 -0.38 1.19 16 26 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 27 H 0.13 2.29 7.76 -52.49 -0.41 1.88 16 28 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 30 H 0.18 1.12 8.06 -52.48 -0.42 0.69 16 LS Contribution 263.79 15.07 3.98 3.98 Total: -1.00 -36.32 263.79 -6.85 -43.17 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -3.81 Total: 1.52 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -2.89 Total: -0.39 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.81 Total: -46.42 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.09 Total: -18.05 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -36.32 -6.85 -43.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334816551.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.328 kcal (2) G-P(sol) polarization free energy of solvation -36.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds