Wall clock time and date at job start Sun Mar 29 2020 23:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36814 * 120.00104 * 2 1 4 4 H 1.07999 * 119.99836 * 185.22232 * 3 2 1 5 5 C 1.39044 * 120.00326 * 5.22739 * 3 2 1 6 6 N 1.31372 * 119.99669 * 5.23196 * 5 3 2 7 7 Si 1.86801 * 120.00140 * 185.23112 * 5 3 2 8 8 H 1.48506 * 109.47073 * 89.99988 * 7 5 3 9 9 H 1.48500 * 109.47004 * 209.99740 * 7 5 3 10 10 H 1.48499 * 109.47173 * 329.99889 * 7 5 3 11 11 C 1.34775 * 119.99777 * 179.97438 * 2 1 3 12 12 O 1.21700 * 120.00180 * 185.70578 * 11 2 1 13 13 C 1.47006 * 120.00099 * 5.70442 * 11 2 1 14 14 C 1.38725 * 120.73361 * 54.63233 * 13 11 2 15 15 C 1.38874 * 121.35038 * 179.97438 * 14 13 11 16 16 C 1.35871 * 122.60345 * 0.05416 * 15 14 13 17 17 C 1.40847 * 120.57012 * 359.96484 * 16 15 14 18 18 C 1.38427 * 134.88537 * 179.97438 * 17 16 15 19 19 N 1.33919 * 107.83576 * 179.97438 * 18 17 16 20 20 H 0.97003 * 125.02675 * 180.02562 * 19 18 17 21 21 N 1.39979 * 109.95294 * 0.02562 * 19 18 17 22 22 C 1.31455 * 109.02338 * 359.97438 * 21 19 18 23 23 H 1.09000 * 109.47436 * 175.11520 * 1 2 3 24 24 H 1.09004 * 109.47110 * 295.12157 * 1 2 3 25 25 H 1.09002 * 109.47189 * 55.11710 * 1 2 3 26 26 H 0.97002 * 119.99408 * 180.02562 * 6 5 3 27 27 H 1.07996 * 119.32277 * 0.02562 * 14 13 11 28 28 H 1.07998 * 118.69185 * 180.02562 * 15 14 13 29 29 H 1.07997 * 119.70991 * 180.23923 * 16 15 14 30 30 H 1.08003 * 126.08471 * 0.04319 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1848 0.0000 4 1 3.2257 1.1867 -0.0851 5 6 1.4583 2.3865 0.1097 6 7 0.1610 2.3818 0.3165 7 14 2.3749 4.0076 -0.0369 8 1 2.3975 4.4367 -1.4584 9 1 1.6888 5.0399 0.7810 10 1 3.7671 3.8348 0.4502 11 6 2.1388 -1.1672 0.0005 12 8 3.3513 -1.1699 0.1053 13 6 1.4092 -2.4372 -0.1255 14 6 0.5448 -2.6558 -1.1882 15 6 -0.1504 -3.8508 -1.3201 16 6 -0.0317 -4.8691 -0.4284 17 6 0.8199 -4.7489 0.6870 18 6 1.1595 -5.5685 1.7496 19 7 2.0370 -4.9063 2.5144 20 1 2.4393 -5.2515 3.3267 21 7 2.2878 -3.6421 1.9683 22 6 1.5796 -3.5016 0.8697 23 1 -0.3634 -1.0239 -0.0875 24 1 -0.3633 0.4363 0.9305 25 1 -0.3634 0.5877 -0.8430 26 1 -0.3210 3.2202 0.3926 27 1 0.4105 -1.8812 -1.9286 28 1 -0.8119 -3.9753 -2.1646 29 1 -0.5918 -5.7801 -0.5787 30 1 0.7844 -6.5653 1.9293 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334816551.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:16 Heat of formation + Delta-G solvation = 56.278931 kcal Electronic energy + Delta-G solvation = -17141.355309 eV Core-core repulsion = 14324.168351 eV Total energy + Delta-G solvation = -2817.186958 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.11781 -40.34390 -37.64214 -36.71276 -33.75208 -32.82563 -31.66953 -29.88257 -28.21621 -26.63411 -25.16585 -22.89880 -22.65302 -20.29934 -19.07513 -18.92029 -18.20526 -17.43289 -16.81102 -16.09932 -15.99209 -15.70224 -15.65280 -14.85819 -14.51893 -14.06752 -13.75227 -13.53251 -12.97757 -12.90113 -12.79207 -12.57600 -12.43785 -12.17699 -12.10929 -11.41385 -11.20326 -11.08080 -10.37911 -9.93160 -9.70298 -8.50234 -8.28025 -5.93908 -0.38989 0.94005 1.29355 1.37386 1.44052 1.51600 1.87347 2.09344 2.24882 2.85370 3.04629 3.17243 3.40539 3.74794 4.12580 4.27344 4.34332 4.54305 4.59859 4.67269 4.80250 5.08641 5.14059 5.38905 5.43273 5.47327 5.54393 5.67348 5.99472 6.04774 6.37253 6.45498 6.69586 7.12229 7.42442 8.00575 8.63177 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.036678 B = 0.006545 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.217458 B = 4277.340773 C = 4648.252810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.452 5.452 3 C -0.345 4.345 4 H 0.074 0.926 5 C -0.005 4.005 6 N -0.894 5.894 7 Si 1.000 3.000 8 H -0.262 1.262 9 H -0.265 1.265 10 H -0.279 1.279 11 C 0.470 3.530 12 O -0.644 6.644 13 C -0.136 4.136 14 C -0.039 4.039 15 C -0.176 4.176 16 C -0.005 4.005 17 C -0.243 4.243 18 C 0.132 3.868 19 N -0.421 5.421 20 H 0.459 0.541 21 N -0.365 5.365 22 C 0.101 3.899 23 H 0.061 0.939 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.275 0.725 27 H 0.125 0.875 28 H 0.163 0.837 29 H 0.179 0.821 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.596 -17.320 0.274 18.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 N -0.168 5.168 3 C -0.473 4.473 4 H 0.092 0.908 5 C -0.206 4.206 6 N -0.533 5.533 7 Si 0.822 3.178 8 H -0.187 1.187 9 H -0.190 1.190 10 H -0.204 1.204 11 C 0.261 3.739 12 O -0.534 6.534 13 C -0.143 4.143 14 C -0.062 4.062 15 C -0.195 4.195 16 C -0.025 4.025 17 C -0.253 4.253 18 C -0.027 4.027 19 N -0.122 5.122 20 H 0.306 0.694 21 N -0.193 5.193 22 C -0.054 4.054 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.143 0.857 28 H 0.180 0.820 29 H 0.196 0.804 30 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -6.325 -16.517 1.188 17.726 hybrid contribution 0.494 0.912 0.050 1.038 sum -5.831 -15.605 1.238 16.705 Atomic orbital electron populations 1.21733 0.78523 0.98631 1.02646 1.43863 1.07292 1.04493 1.61168 1.19786 0.92920 0.83982 1.50572 0.90837 1.26182 0.96880 1.02384 0.95188 1.70253 1.07632 1.28486 1.46961 0.84854 0.77639 0.76248 0.79046 1.18738 1.18971 1.20379 1.18444 0.87046 0.84427 0.83969 1.90548 1.16344 1.87923 1.58566 1.19842 1.03612 0.92512 0.98314 1.21340 0.91843 0.98789 0.94198 1.20645 1.03387 0.92625 1.02862 1.20743 0.93101 0.99392 0.89221 1.20169 1.08186 0.94103 1.02793 1.23775 0.90335 0.99455 0.89105 1.46487 1.32333 1.10814 1.22596 0.69397 1.77621 1.27290 0.99784 1.14617 1.21867 0.95372 0.95370 0.92835 0.92035 0.93086 0.92481 0.91508 0.85747 0.81994 0.80394 0.72470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.48 8.26 127.77 1.06 7.54 16 2 N -0.45 -26.79 3.02 -663.11 -2.00 -28.79 16 3 C -0.34 -21.63 9.55 84.11 0.80 -20.82 16 4 H 0.07 4.93 7.20 -2.91 -0.02 4.91 16 5 C -0.01 -0.30 5.42 84.96 0.46 0.16 16 6 N -0.89 -49.35 9.52 21.68 0.21 -49.14 16 7 Si 1.00 44.93 29.56 68.60 2.03 46.96 16 8 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 9 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 C 0.47 27.88 7.13 86.54 0.62 28.50 16 12 O -0.64 -43.82 16.71 -4.35 -0.07 -43.90 16 13 C -0.14 -6.42 4.85 -18.65 -0.09 -6.51 16 14 C -0.04 -1.42 7.50 22.54 0.17 -1.25 16 15 C -0.18 -4.41 9.83 21.87 0.21 -4.19 16 16 C 0.00 -0.10 10.02 22.36 0.22 0.13 16 17 C -0.24 -6.62 6.34 -20.25 -0.13 -6.75 16 18 C 0.13 2.30 12.08 84.42 1.02 3.32 16 19 N -0.42 -10.26 7.18 -56.27 -0.40 -10.66 16 20 H 0.46 6.94 8.96 -213.40 -1.91 5.02 16 21 N -0.37 -15.43 12.67 -45.21 -0.57 -16.00 16 22 C 0.10 4.29 7.49 43.77 0.33 4.61 16 23 H 0.06 2.71 4.81 -2.39 -0.01 2.70 16 24 H 0.05 2.77 6.88 -2.38 -0.02 2.75 16 25 H 0.06 2.90 7.24 -2.39 -0.02 2.89 16 26 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 27 H 0.12 4.49 7.76 -2.91 -0.02 4.46 16 28 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 29 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 30 H 0.26 0.54 8.06 -2.91 -0.02 0.51 16 Total: -1.00 -92.12 263.79 3.14 -88.98 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -0.72 Total: 7.82 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 4.67 Total: 4.72 kcal Atomic # 7 Polarization: -101.82 SS G_CDS: -2.77 Total: -104.59 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -0.07 Total: -43.90 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -92.12 3.14 -88.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334816551.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.261 kcal (2) G-P(sol) polarization free energy of solvation -92.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds