Wall clock time and date at job start Sun Mar 29 2020 23:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 119.99969 * 2 1 4 4 H 1.48501 * 109.47272 * 270.00366 * 3 2 1 5 5 H 1.48494 * 109.47247 * 30.00603 * 3 2 1 6 6 H 1.48505 * 109.47089 * 150.00694 * 3 2 1 7 7 C 1.37878 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99994 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99850 * 179.97438 * 7 2 1 10 10 N 1.46495 * 109.47011 * 179.97438 * 9 7 2 11 11 C 1.34781 * 120.00078 * 180.02562 * 10 9 7 12 12 O 1.21545 * 119.99734 * 0.02562 * 11 10 9 13 13 C 1.47950 * 120.00028 * 180.02562 * 11 10 9 14 14 C 1.39797 * 119.31565 * 179.97438 * 13 11 10 15 15 C 1.37011 * 119.45441 * 179.97438 * 14 13 11 16 16 C 1.39775 * 118.23572 * 0.06853 * 15 14 13 17 17 C 1.46146 * 134.24071 * 179.97438 * 16 15 14 18 18 C 1.34433 * 106.91801 * 180.02562 * 17 16 15 19 19 N 1.36719 * 110.00610 * 0.02562 * 18 17 16 20 20 H 0.96996 * 125.00298 * 179.97438 * 19 18 17 21 21 C 1.37560 * 110.00242 * 359.97438 * 19 18 17 22 22 N 1.32172 * 133.20642 * 180.02562 * 21 19 18 23 23 H 0.97003 * 119.99963 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46958 * 59.99900 * 9 7 2 25 25 H 1.08994 * 109.46797 * 300.00112 * 9 7 2 26 26 H 0.97002 * 120.00390 * 0.02562 * 10 9 7 27 27 H 1.07997 * 120.27320 * 0.03387 * 14 13 11 28 28 H 1.08001 * 120.87879 * 180.34434 * 15 14 13 29 29 H 1.08004 * 126.54379 * 0.03035 * 17 16 15 30 30 H 1.08004 * 124.99964 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6525 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 5.3249 -2.8217 -0.0009 12 8 6.1147 -1.8979 -0.0005 13 6 5.8180 -4.2166 -0.0014 14 6 7.1954 -4.4557 -0.0019 15 6 7.6551 -5.7464 -0.0017 16 6 6.7170 -6.7825 -0.0026 17 6 6.8088 -8.2411 -0.0033 18 6 5.5498 -8.7123 -0.0046 19 7 4.6614 -7.6731 -0.0054 20 1 3.6959 -7.7664 -0.0068 21 6 5.3382 -6.4755 -0.0040 22 7 4.9446 -5.2137 -0.0037 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6805 0.8888 25 1 3.8745 -0.6801 -0.8911 26 1 3.3695 -3.3126 -0.0010 27 1 7.8913 -3.6298 -0.0013 28 1 8.7143 -5.9575 0.0035 29 1 7.7152 -8.8284 -0.0027 30 1 5.2797 -9.7580 -0.0058 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335784353.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:10 Heat of formation + Delta-G solvation = 10.395321 kcal Electronic energy + Delta-G solvation = -16373.969764 eV Core-core repulsion = 13554.793143 eV Total energy + Delta-G solvation = -2819.176621 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.54851 -40.71832 -38.46328 -36.27869 -34.56175 -33.96113 -31.25808 -30.79684 -29.51286 -25.74426 -24.40312 -23.39622 -21.78914 -21.56457 -19.60519 -19.41287 -18.23130 -17.37346 -17.00758 -16.59080 -16.20442 -15.80205 -15.78503 -15.21155 -14.63446 -14.33109 -14.26435 -14.10459 -14.04240 -13.14248 -13.11900 -12.97785 -12.69547 -11.92868 -11.71529 -11.53846 -11.44125 -10.93574 -10.48930 -10.05928 -9.55582 -9.00646 -8.41603 -6.49866 -0.43555 0.27529 1.33732 1.34751 1.48564 1.56655 1.74338 1.94943 2.27414 2.32473 2.88620 2.94198 3.31668 3.66899 3.83079 4.00430 4.14888 4.42573 4.67368 4.73180 4.74918 4.92760 4.97551 5.17366 5.21430 5.40064 5.46214 5.52654 5.91960 6.02773 6.28727 6.48914 6.67930 6.89690 7.09527 7.24544 8.73517 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.040244 B = 0.004964 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.591294 B = 5639.708372 C = 6320.156146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.027 3.973 3 Si 0.942 3.058 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.258 1.258 7 C -0.551 4.551 8 H 0.053 0.947 9 C 0.229 3.771 10 N -0.687 5.687 11 C 0.556 3.444 12 O -0.578 6.578 13 C 0.093 3.907 14 C -0.147 4.147 15 C -0.033 4.033 16 C -0.140 4.140 17 C -0.214 4.214 18 C 0.095 3.905 19 N -0.578 5.578 20 H 0.430 0.570 21 C 0.246 3.754 22 N -0.489 5.489 23 H 0.274 0.726 24 H 0.020 0.980 25 H 0.019 0.981 26 H 0.410 0.590 27 H 0.151 0.849 28 H 0.180 0.820 29 H 0.184 0.816 30 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.648 -20.158 -0.013 24.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.173 4.173 3 Si 0.765 3.235 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.182 1.182 7 C -0.589 4.589 8 H 0.071 0.929 9 C 0.106 3.894 10 N -0.335 5.335 11 C 0.342 3.658 12 O -0.459 6.459 13 C -0.053 4.053 14 C -0.170 4.170 15 C -0.059 4.059 16 C -0.148 4.148 17 C -0.238 4.238 18 C -0.032 4.032 19 N -0.185 5.185 20 H 0.270 0.730 21 C 0.010 3.990 22 N -0.205 5.205 23 H 0.083 0.917 24 H 0.038 0.962 25 H 0.037 0.963 26 H 0.246 0.754 27 H 0.169 0.831 28 H 0.197 0.803 29 H 0.201 0.799 30 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 13.938 -19.241 -0.012 23.759 hybrid contribution -0.320 0.603 -0.013 0.683 sum 13.618 -18.638 -0.026 23.083 Atomic orbital electron populations 1.69990 1.07793 1.28767 1.50447 1.25640 0.95618 1.02830 0.93250 0.85788 0.79297 0.78760 0.79669 1.18706 1.19521 1.18179 1.21247 0.89849 0.94581 1.53238 0.92924 1.19246 0.93606 0.80272 0.96281 1.45984 1.06507 1.10243 1.70801 1.18369 0.82616 0.88019 0.76767 1.90694 1.56245 1.45648 1.53283 1.20541 0.91387 0.90266 1.03091 1.21629 0.94213 0.99366 1.01821 1.21031 1.01340 0.89225 0.94272 1.20606 0.92651 0.97071 1.04458 1.22078 0.99085 0.89596 1.13089 1.22880 0.87934 0.93981 0.98406 1.41834 1.10404 1.02139 1.64167 0.73020 1.18710 0.90624 0.86389 1.03302 1.66098 1.40407 0.98732 1.15283 0.91713 0.96175 0.96278 0.75420 0.83093 0.80297 0.79876 0.75345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.18 13.96 21.45 0.30 -56.88 16 2 C 0.03 1.57 5.47 84.65 0.46 2.04 16 3 Si 0.94 45.08 27.47 68.60 1.88 46.96 16 4 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.26 -12.17 6.54 99.48 0.65 -11.52 16 7 C -0.55 -32.30 9.83 25.60 0.25 -32.05 16 8 H 0.05 3.29 7.84 -2.91 -0.02 3.26 16 9 C 0.23 12.08 4.50 85.64 0.39 12.47 16 10 N -0.69 -32.27 5.54 -469.61 -2.60 -34.87 16 11 C 0.56 24.59 7.80 86.82 0.68 25.26 16 12 O -0.58 -28.00 16.28 -3.86 -0.06 -28.06 16 13 C 0.09 3.38 6.74 41.99 0.28 3.67 16 14 C -0.15 -4.30 9.55 22.36 0.21 -4.09 16 15 C -0.03 -0.72 10.17 22.35 0.23 -0.49 16 16 C -0.14 -3.14 6.39 -20.11 -0.13 -3.27 16 17 C -0.21 -2.88 11.08 23.45 0.26 -2.62 16 18 C 0.09 0.98 11.81 83.06 0.98 1.96 16 19 N -0.58 -10.20 6.05 -192.18 -1.16 -11.36 16 20 H 0.43 5.97 8.96 -92.71 -0.83 5.13 16 21 C 0.25 6.68 8.43 134.14 1.13 7.81 16 22 N -0.49 -16.83 9.53 -181.83 -1.73 -18.56 16 23 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 24 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 25 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 26 H 0.41 18.45 7.62 -92.71 -0.71 17.75 16 27 H 0.15 4.22 7.60 -2.91 -0.02 4.19 16 28 H 0.18 2.35 8.06 -2.91 -0.02 2.33 16 29 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 30 H 0.23 -0.06 8.06 -2.91 -0.02 -0.08 16 Total: -1.00 -76.86 270.63 0.98 -75.89 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -0.39 Total: 16.19 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 4.74 Total: 10.69 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -5.20 Total: -121.68 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.06 Total: -28.06 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.96 kcal Total: -76.86 0.98 -75.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335784353.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.282 kcal (2) G-P(sol) polarization free energy of solvation -76.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds