Wall clock time and date at job start Sun Mar 29 2020 23:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36269 * 120.11307 * 2 1 4 4 C 1.39707 * 121.50706 * 180.02562 * 3 2 1 5 5 N 1.38614 * 119.31323 * 180.02562 * 4 3 2 6 6 C 1.34776 * 119.99925 * 144.59693 * 5 4 3 7 7 O 1.22046 * 120.00234 * 4.43457 * 6 5 4 8 8 C 1.39777 * 120.00039 * 184.43180 * 6 5 4 9 9 H 1.07999 * 119.99617 * 0.02562 * 8 6 5 10 10 C 1.39824 * 120.00027 * 180.02562 * 8 6 5 11 11 N 1.30817 * 119.99901 * 0.02562 * 10 8 6 12 12 Si 1.86797 * 119.99980 * 180.02562 * 10 8 6 13 13 H 1.48491 * 109.47380 * 60.00034 * 12 10 8 14 14 H 1.48497 * 109.47122 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47219 * 299.99880 * 12 10 8 16 16 C 1.39268 * 121.37585 * 0.02562 * 4 3 2 17 17 C 1.40244 * 119.34474 * 359.97438 * 16 4 3 18 18 N 1.32500 * 135.49678 * 179.97438 * 17 16 4 19 19 N 1.28491 * 110.83336 * 180.02562 * 18 17 16 20 20 H 0.97001 * 124.02621 * 179.97438 * 19 18 17 21 21 C 1.34959 * 111.95304 * 0.22619 * 19 18 17 22 22 C 1.38565 * 106.81972 * 359.63615 * 21 19 18 23 23 H 1.08999 * 109.47296 * 90.00233 * 1 2 3 24 24 H 1.09000 * 109.47283 * 209.99985 * 1 2 3 25 25 H 1.09000 * 109.47130 * 329.99835 * 1 2 3 26 26 H 1.08005 * 119.24869 * 0.03881 * 3 2 1 27 27 H 0.96995 * 119.99759 * 324.60274 * 5 4 3 28 28 H 0.97002 * 119.99977 * 179.97438 * 11 10 8 29 29 H 1.08004 * 120.32724 * 179.97438 * 16 4 3 30 30 H 1.07996 * 126.59040 * 179.73822 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.1788 0.0000 4 6 3.5873 1.2128 -0.0005 5 7 4.2363 2.4376 0.0000 6 6 5.3928 2.5871 0.6759 7 8 5.9105 1.6250 1.2198 8 6 5.9993 3.8440 0.7538 9 1 5.5409 4.6954 0.2727 10 6 7.1993 3.9990 1.4545 11 7 7.7547 2.9676 2.0367 12 14 8.0094 5.6789 1.5592 13 1 7.0834 6.6349 2.2178 14 1 9.2613 5.5763 2.3512 15 1 8.3279 6.1611 0.1912 16 6 4.3411 0.0417 -0.0016 17 6 3.6852 -1.1979 -0.0016 18 7 4.0641 -2.4675 -0.0029 19 7 3.0441 -3.2489 -0.0027 20 1 3.1020 -4.2171 -0.0039 21 6 1.8824 -2.5620 -0.0063 22 6 2.2123 -1.2162 -0.0005 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6402 2.1081 0.0006 27 1 3.8582 3.1870 -0.4859 28 1 8.5874 3.0750 2.5225 29 1 5.4202 0.0878 -0.0024 30 1 0.8869 -2.9807 -0.0109 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335836768.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:24 Heat of formation + Delta-G solvation = 55.049432 kcal Electronic energy + Delta-G solvation = -16810.252808 eV Core-core repulsion = 13993.012535 eV Total energy + Delta-G solvation = -2817.240273 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.81964 -38.55885 -36.47033 -33.62992 -32.33258 -31.96371 -29.50407 -29.26570 -26.74071 -26.28522 -23.16768 -21.79791 -20.07487 -19.13078 -17.98350 -17.42175 -16.54730 -15.49372 -15.35968 -15.05035 -14.19581 -13.87692 -13.85070 -13.23261 -12.90272 -12.51764 -12.43465 -11.89083 -11.58381 -11.32323 -11.21644 -11.08881 -10.83748 -10.53411 -10.31510 -9.78776 -9.53889 -9.08124 -8.69393 -7.60145 -7.49425 -6.54022 -6.29275 -4.86513 1.20007 2.37671 3.01726 3.10820 3.15963 3.18084 3.24855 4.03006 4.32894 4.58722 4.69593 4.86503 5.03695 5.37633 5.58246 5.63904 5.77764 5.81436 5.88573 5.99270 6.08275 6.29425 6.72640 6.95011 7.18710 7.26518 7.28484 7.35810 7.51243 7.99375 8.12918 8.35695 8.51551 8.85622 9.42179 10.45346 10.70681 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.039966 B = 0.005685 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.423224 B = 4924.230604 C = 5521.741864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.037 4.037 3 C -0.148 4.148 4 C 0.197 3.803 5 N -0.698 5.698 6 C 0.542 3.458 7 O -0.566 6.566 8 C -0.536 4.536 9 H 0.068 0.932 10 C 0.088 3.912 11 N -0.744 5.744 12 Si 0.913 3.087 13 H -0.266 1.266 14 H -0.279 1.279 15 H -0.266 1.266 16 C -0.121 4.121 17 C 0.096 3.904 18 N -0.324 5.324 19 N -0.354 5.354 20 H 0.440 0.560 21 C -0.017 4.017 22 C -0.179 4.179 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.119 0.881 27 H 0.391 0.609 28 H 0.272 0.728 29 H 0.148 0.852 30 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.631 -5.991 -4.494 14.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.040 4.040 3 C -0.169 4.169 4 C 0.093 3.907 5 N -0.341 5.341 6 C 0.351 3.649 7 O -0.449 6.449 8 C -0.572 4.572 9 H 0.087 0.913 10 C -0.136 4.136 11 N -0.371 5.371 12 Si 0.737 3.263 13 H -0.191 1.191 14 H -0.204 1.204 15 H -0.191 1.191 16 C -0.147 4.147 17 C -0.049 4.049 18 N -0.160 5.160 19 N -0.059 5.059 20 H 0.282 0.718 21 C -0.172 4.172 22 C -0.188 4.188 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.137 0.863 27 H 0.224 0.776 28 H 0.083 0.917 29 H 0.166 0.834 30 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -11.011 -7.351 -3.945 13.815 hybrid contribution -0.534 1.167 -0.070 1.285 sum -11.545 -6.184 -4.015 13.699 Atomic orbital electron populations 1.20690 0.91642 1.02235 1.01689 1.18602 0.94470 0.90399 1.00522 1.20447 0.92958 0.97274 1.06241 1.17529 0.89937 0.87047 0.96149 1.43905 1.26993 1.09265 1.53968 1.16548 0.78683 0.90761 0.78874 1.90739 1.62724 1.41576 1.49894 1.19563 1.07773 0.95025 1.34799 0.91324 1.25733 0.96541 0.97920 0.93383 1.70115 1.14763 1.30332 1.21908 0.86341 0.78655 0.82194 0.79099 1.19092 1.20394 1.19065 1.20532 1.00993 0.86491 1.06697 1.20547 0.91478 0.91344 1.01560 1.73746 1.12238 1.01693 1.28356 1.43366 1.03195 1.09874 1.49445 0.71762 1.22841 0.91893 0.91773 1.10739 1.19360 0.94549 0.92434 1.12484 0.91603 0.92123 0.91718 0.86309 0.77573 0.91663 0.83445 0.80393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.97 36.00 0.36 -0.83 16 2 C -0.04 -0.59 5.89 -104.45 -0.62 -1.21 16 3 C -0.15 -2.66 9.44 -39.74 -0.38 -3.03 16 4 C 0.20 4.37 6.28 -83.86 -0.53 3.85 16 5 N -0.70 -16.18 5.25 -12.91 -0.07 -16.25 16 6 C 0.54 15.40 7.32 -15.68 -0.11 15.28 16 7 O -0.57 -18.24 12.19 4.88 0.06 -18.18 16 8 C -0.54 -14.80 9.20 -38.41 -0.35 -15.15 16 9 H 0.07 1.70 7.84 -52.49 -0.41 1.29 16 10 C 0.09 2.38 5.49 -17.39 -0.10 2.29 16 11 N -0.74 -21.90 11.69 55.54 0.65 -21.25 16 12 Si 0.91 19.57 29.56 -169.99 -5.02 14.55 16 13 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 14 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 15 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 16 C -0.12 -2.93 8.75 -38.45 -0.34 -3.26 16 17 C 0.10 2.05 7.52 -83.14 -0.63 1.43 16 18 N -0.32 -6.28 12.22 33.18 0.41 -5.87 16 19 N -0.35 -4.85 6.72 31.08 0.21 -4.64 16 20 H 0.44 3.84 8.96 -190.43 -1.71 2.13 16 21 C -0.02 -0.23 11.99 -16.06 -0.19 -0.42 16 22 C -0.18 -3.12 6.18 -105.21 -0.65 -3.77 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.59 7.98 -51.93 -0.41 0.18 16 25 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 26 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 27 H 0.39 7.63 8.76 -40.82 -0.36 7.28 16 28 H 0.27 7.26 8.30 -40.82 -0.34 6.92 16 29 H 0.15 4.09 6.19 -52.48 -0.32 3.76 16 30 H 0.18 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 267.34 15.07 4.03 4.03 Total: -1.00 -36.43 267.34 -7.30 -43.73 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -4.04 Total: 8.71 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -3.53 Total: -4.83 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 1.20 Total: -48.01 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: 0.06 Total: -18.18 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -36.43 -7.30 -43.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335836768.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.781 kcal (2) G-P(sol) polarization free energy of solvation -36.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds