Wall clock time and date at job start Sun Mar 29 2020 23:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36269 * 120.11307 * 2 1 4 4 C 1.39707 * 121.50706 * 180.02562 * 3 2 1 5 5 N 1.38614 * 119.31323 * 180.02562 * 4 3 2 6 6 C 1.34776 * 119.99925 * 144.59693 * 5 4 3 7 7 O 1.22046 * 120.00234 * 4.43457 * 6 5 4 8 8 C 1.39777 * 120.00039 * 184.43180 * 6 5 4 9 9 H 1.07999 * 119.99617 * 0.02562 * 8 6 5 10 10 C 1.39824 * 120.00027 * 180.02562 * 8 6 5 11 11 N 1.30817 * 119.99901 * 0.02562 * 10 8 6 12 12 Si 1.86797 * 119.99980 * 180.02562 * 10 8 6 13 13 H 1.48491 * 109.47380 * 60.00034 * 12 10 8 14 14 H 1.48497 * 109.47122 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47219 * 299.99880 * 12 10 8 16 16 C 1.39268 * 121.37585 * 0.02562 * 4 3 2 17 17 C 1.40244 * 119.34474 * 359.97438 * 16 4 3 18 18 N 1.32500 * 135.49678 * 179.97438 * 17 16 4 19 19 N 1.28491 * 110.83336 * 180.02562 * 18 17 16 20 20 H 0.97001 * 124.02621 * 179.97438 * 19 18 17 21 21 C 1.34959 * 111.95304 * 0.22619 * 19 18 17 22 22 C 1.38565 * 106.81972 * 359.63615 * 21 19 18 23 23 H 1.08999 * 109.47296 * 90.00233 * 1 2 3 24 24 H 1.09000 * 109.47283 * 209.99985 * 1 2 3 25 25 H 1.09000 * 109.47130 * 329.99835 * 1 2 3 26 26 H 1.08005 * 119.24869 * 0.03881 * 3 2 1 27 27 H 0.96995 * 119.99759 * 324.60274 * 5 4 3 28 28 H 0.97002 * 119.99977 * 179.97438 * 11 10 8 29 29 H 1.08004 * 120.32724 * 179.97438 * 16 4 3 30 30 H 1.07996 * 126.59040 * 179.73822 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.1788 0.0000 4 6 3.5873 1.2128 -0.0005 5 7 4.2363 2.4376 0.0000 6 6 5.3928 2.5871 0.6759 7 8 5.9105 1.6250 1.2198 8 6 5.9993 3.8440 0.7538 9 1 5.5409 4.6954 0.2727 10 6 7.1993 3.9990 1.4545 11 7 7.7547 2.9676 2.0367 12 14 8.0094 5.6789 1.5592 13 1 7.0834 6.6349 2.2178 14 1 9.2613 5.5763 2.3512 15 1 8.3279 6.1611 0.1912 16 6 4.3411 0.0417 -0.0016 17 6 3.6852 -1.1979 -0.0016 18 7 4.0641 -2.4675 -0.0029 19 7 3.0441 -3.2489 -0.0027 20 1 3.1020 -4.2171 -0.0039 21 6 1.8824 -2.5620 -0.0063 22 6 2.2123 -1.2162 -0.0005 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6402 2.1081 0.0006 27 1 3.8582 3.1870 -0.4859 28 1 8.5874 3.0750 2.5225 29 1 5.4202 0.0878 -0.0024 30 1 0.8869 -2.9807 -0.0109 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335836768.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:24 Heat of formation + Delta-G solvation = 26.257924 kcal Electronic energy + Delta-G solvation = -16811.501301 eV Core-core repulsion = 13993.012535 eV Total energy + Delta-G solvation = -2818.488766 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.13048 -40.40399 -38.12012 -35.41314 -34.42630 -33.42617 -31.01451 -30.62012 -28.64975 -27.64137 -24.61083 -23.31289 -21.89219 -20.56129 -19.53573 -19.08277 -18.06798 -17.52826 -16.91193 -16.35182 -15.90954 -15.49084 -15.36653 -14.76345 -14.29954 -14.11159 -13.90370 -13.25311 -13.17872 -12.82920 -12.74075 -12.69317 -12.53642 -12.31422 -12.04837 -11.17937 -10.99480 -10.85012 -10.51472 -9.76185 -8.99612 -8.36722 -8.17438 -7.04303 -0.11809 0.87585 1.39378 1.42960 1.56056 1.69335 2.20490 2.23881 2.38055 2.93749 3.06374 3.51667 3.69807 3.86862 4.29911 4.34692 4.51564 4.56833 4.76444 4.92607 5.02003 5.14094 5.20208 5.35974 5.57876 5.60962 5.74171 5.90687 5.94052 6.24926 6.37130 6.54059 6.72603 7.17642 7.47408 8.41573 8.60818 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.039966 B = 0.005685 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.423224 B = 4924.230604 C = 5521.741864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.001 3.999 3 C -0.183 4.183 4 C 0.192 3.808 5 N -0.691 5.691 6 C 0.524 3.476 7 O -0.618 6.618 8 C -0.562 4.562 9 H 0.094 0.906 10 C 0.028 3.972 11 N -0.802 5.802 12 Si 1.007 2.993 13 H -0.250 1.250 14 H -0.274 1.274 15 H -0.252 1.252 16 C -0.178 4.178 17 C 0.065 3.935 18 N -0.375 5.375 19 N -0.337 5.337 20 H 0.462 0.538 21 C 0.044 3.956 22 C -0.214 4.214 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.147 0.853 27 H 0.407 0.593 28 H 0.278 0.722 29 H 0.086 0.914 30 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.567 -5.967 -4.955 18.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.002 4.002 3 C -0.204 4.204 4 C 0.089 3.911 5 N -0.335 5.335 6 C 0.334 3.666 7 O -0.505 6.505 8 C -0.596 4.596 9 H 0.112 0.888 10 C -0.190 4.190 11 N -0.430 5.430 12 Si 0.825 3.175 13 H -0.173 1.173 14 H -0.198 1.198 15 H -0.175 1.175 16 C -0.204 4.204 17 C -0.080 4.080 18 N -0.212 5.212 19 N -0.043 5.043 20 H 0.310 0.690 21 C -0.113 4.113 22 C -0.223 4.223 23 H 0.110 0.890 24 H 0.106 0.894 25 H 0.096 0.904 26 H 0.165 0.835 27 H 0.243 0.757 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -14.984 -7.356 -4.445 17.274 hybrid contribution 0.500 0.899 0.024 1.029 sum -14.484 -6.457 -4.421 16.462 Atomic orbital electron populations 1.20854 0.86968 1.04331 1.03887 1.19263 0.97381 0.88965 0.94587 1.20582 0.90658 0.99678 1.09492 1.17894 0.91944 0.85603 0.95662 1.43492 1.25931 1.10567 1.53556 1.17016 0.79825 0.90769 0.79006 1.90712 1.64608 1.43113 1.52110 1.20138 1.08668 0.95469 1.35371 0.88775 1.27109 0.96820 1.03111 0.91957 1.70304 1.15640 1.33897 1.23201 0.84941 0.77401 0.75351 0.79822 1.17346 1.19840 1.17539 1.20135 0.98434 0.89503 1.12315 1.20522 0.94113 0.90994 1.02367 1.73660 1.14764 1.01721 1.31044 1.43496 1.02625 1.10861 1.47361 0.69020 1.23850 0.93743 0.89702 1.04032 1.19853 0.92316 0.95126 1.14994 0.88980 0.89356 0.90433 0.83549 0.75675 0.91183 0.89578 0.73538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.72 9.97 71.23 0.71 -1.01 16 2 C 0.00 0.04 5.89 -19.75 -0.12 -0.08 16 3 C -0.18 -6.51 9.44 22.17 0.21 -6.30 16 4 C 0.19 9.07 6.28 38.67 0.24 9.31 16 5 N -0.69 -34.21 5.25 -312.83 -1.64 -35.85 16 6 C 0.52 32.00 7.32 84.61 0.62 32.62 16 7 O -0.62 -43.71 12.19 -5.46 -0.07 -43.78 16 8 C -0.56 -32.27 9.20 23.03 0.21 -32.06 16 9 H 0.09 4.71 7.84 -2.91 -0.02 4.69 16 10 C 0.03 1.58 5.49 85.23 0.47 2.05 16 11 N -0.80 -50.09 11.69 21.80 0.25 -49.84 16 12 Si 1.01 40.72 29.56 68.60 2.03 42.75 16 13 H -0.25 -9.38 7.11 99.48 0.71 -8.68 16 14 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 15 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 16 C -0.18 -9.48 8.75 23.01 0.20 -9.28 16 17 C 0.06 2.90 7.52 41.92 0.32 3.22 16 18 N -0.37 -14.95 12.22 -48.94 -0.60 -15.55 16 19 N -0.34 -8.35 6.72 -55.59 -0.37 -8.72 16 20 H 0.46 6.54 8.96 -219.98 -1.97 4.57 16 21 C 0.04 0.92 11.99 84.29 1.01 1.93 16 22 C -0.21 -6.96 6.18 -20.24 -0.13 -7.08 16 23 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.09 1.04 7.98 -2.39 -0.02 1.02 16 25 H 0.08 1.17 8.08 -2.39 -0.02 1.15 16 26 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 27 H 0.41 16.63 8.76 -92.71 -0.81 15.82 16 28 H 0.28 15.66 8.30 -92.71 -0.77 14.89 16 29 H 0.09 5.51 6.19 -2.91 -0.02 5.50 16 30 H 0.25 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -92.24 267.34 1.77 -90.47 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: -1.58 Total: 27.20 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 3.75 Total: -6.68 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -2.36 Total: -109.96 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -0.07 Total: -43.78 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -92.24 1.77 -90.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335836768.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.731 kcal (2) G-P(sol) polarization free energy of solvation -92.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds