Wall clock time and date at job start Sun Mar 29 2020 23:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30088 * 124.98332 * 2 1 4 4 C 1.35847 * 109.53497 * 179.97438 * 3 2 1 5 5 C 1.39752 * 133.50130 * 180.02562 * 4 3 2 6 6 C 1.37855 * 120.12065 * 180.25656 * 5 4 3 7 7 C 1.38316 * 120.72860 * 359.54449 * 6 5 4 8 8 C 1.39476 * 120.27497 * 0.42056 * 7 6 5 9 9 C 1.47409 * 120.25281 * 179.78631 * 8 7 6 10 10 O 1.21629 * 120.00142 * 180.02562 * 9 8 7 11 11 N 1.34777 * 120.00077 * 0.02562 * 9 8 7 12 12 C 1.36884 * 120.00161 * 179.97438 * 11 9 8 13 13 H 1.07994 * 119.99647 * 359.97438 * 12 11 9 14 14 C 1.39028 * 120.00052 * 180.02562 * 12 11 9 15 15 N 1.31379 * 120.00304 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99874 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47068 * 90.00060 * 16 14 12 18 18 H 1.48506 * 109.46974 * 209.99927 * 16 14 12 19 19 H 1.48496 * 109.47320 * 330.00107 * 16 14 12 20 20 C 1.40245 * 119.49111 * 359.80813 * 8 7 6 21 21 N 1.36112 * 124.98083 * 179.97438 * 2 1 3 22 22 H 0.96999 * 126.30801 * 0.02562 * 21 2 1 23 23 H 1.08999 * 109.47390 * 270.02776 * 1 2 3 24 24 H 1.09008 * 109.46922 * 30.03051 * 1 2 3 25 25 H 1.08999 * 109.47315 * 150.02376 * 1 2 3 26 26 H 1.08002 * 119.93685 * 359.97116 * 5 4 3 27 27 H 1.07994 * 119.63517 * 179.74315 * 6 5 4 28 28 H 1.07994 * 119.85907 * 180.22669 * 7 6 5 29 29 H 0.97000 * 119.99588 * 0.02562 * 11 9 8 30 30 H 0.96998 * 119.99956 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2528 1.0658 0.0000 4 6 3.5622 0.7040 0.0006 5 6 4.7595 1.4248 0.0013 6 6 5.9672 0.7601 -0.0036 7 6 6.0131 -0.6223 0.0002 8 6 4.8325 -1.3650 0.0003 9 6 4.8820 -2.8383 -0.0004 10 8 3.8497 -3.4815 -0.0008 11 7 6.0712 -3.4727 -0.0005 12 6 6.1171 -4.8407 -0.0006 13 1 5.2005 -5.4117 -0.0002 14 6 7.3438 -5.4951 -0.0002 15 7 8.4589 -4.8004 0.0008 16 14 7.4064 -7.3620 0.0004 17 1 7.4233 -7.8572 -1.3995 18 1 8.6348 -7.8159 0.7008 19 1 6.2112 -7.8973 0.7003 20 6 3.5981 -0.6995 0.0005 21 7 2.2873 -1.1152 0.0005 22 1 1.9762 -2.0340 0.0006 23 1 -0.3634 0.0005 1.0276 24 1 -0.3633 0.8898 -0.5143 25 1 -0.3634 -0.8902 -0.5134 26 1 4.7385 2.5046 0.0010 27 1 6.8876 1.3249 -0.0072 28 1 6.9670 -1.1286 0.0000 29 1 6.8944 -2.9597 0.0002 30 1 9.3147 -5.2570 0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335926901.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:41 Heat of formation + Delta-G solvation = 22.331418 kcal Electronic energy + Delta-G solvation = -16792.110808 eV Core-core repulsion = 13973.451775 eV Total energy + Delta-G solvation = -2818.659033 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.81511 -38.43451 -36.55478 -34.21665 -32.61139 -31.62504 -31.07769 -29.63979 -27.33289 -25.32201 -22.70005 -21.89520 -20.59649 -19.59733 -18.31749 -17.12019 -16.87814 -15.74550 -15.26348 -14.91403 -14.53165 -14.20966 -13.61834 -13.59149 -13.09647 -12.93860 -12.81403 -12.57086 -11.73036 -11.58024 -11.52995 -11.28775 -11.14671 -10.51396 -10.39752 -10.27816 -9.86808 -9.70253 -8.61029 -8.20639 -8.00031 -7.74695 -6.65480 -3.97926 1.04392 1.88176 2.86231 3.11377 3.15829 3.21281 3.30912 3.81709 4.00995 4.31226 4.44543 4.73806 5.06449 5.19701 5.27523 5.36622 5.41928 5.42282 5.64066 5.77329 5.83448 6.00588 6.18457 6.37613 6.75967 6.80467 6.81522 7.16607 7.33540 7.71583 7.87565 8.14369 8.39404 8.95266 9.31277 9.85756 10.50960 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.034179 B = 0.005987 C = 0.005109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.020729 B = 4675.703303 C = 5479.579775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.267 3.733 3 N -0.499 5.499 4 C 0.036 3.964 5 C -0.070 4.070 6 C -0.127 4.127 7 C -0.094 4.094 8 C -0.086 4.086 9 C 0.464 3.536 10 O -0.612 6.612 11 N -0.535 5.535 12 C -0.296 4.296 13 H 0.108 0.892 14 C 0.025 3.975 15 N -0.885 5.885 16 Si 0.936 3.064 17 H -0.275 1.275 18 H -0.281 1.281 19 H -0.267 1.267 20 C 0.091 3.909 21 N -0.576 5.576 22 H 0.433 0.567 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.078 0.922 26 H 0.125 0.875 27 H 0.129 0.871 28 H 0.134 0.866 29 H 0.396 0.604 30 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.847 8.479 0.004 10.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.001 4.001 3 N -0.222 5.222 4 C -0.082 4.082 5 C -0.091 4.091 6 C -0.148 4.148 7 C -0.115 4.115 8 C -0.093 4.093 9 C 0.253 3.747 10 O -0.501 6.501 11 N -0.168 5.168 12 C -0.425 4.425 13 H 0.126 0.874 14 C -0.179 4.179 15 N -0.524 5.524 16 Si 0.762 3.238 17 H -0.201 1.201 18 H -0.206 1.206 19 H -0.192 1.192 20 C -0.023 4.023 21 N -0.188 5.188 22 H 0.275 0.725 23 H 0.104 0.896 24 H 0.111 0.889 25 H 0.097 0.903 26 H 0.143 0.857 27 H 0.147 0.853 28 H 0.151 0.849 29 H 0.231 0.769 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.542 8.799 0.008 11.589 hybrid contribution 0.886 -1.904 -0.001 2.100 sum -6.656 6.895 0.007 9.583 Atomic orbital electron populations 1.20311 0.84548 1.04381 1.03953 1.23576 0.95628 0.81487 0.99359 1.70379 1.00749 1.27613 1.23422 1.19008 0.92079 0.90122 1.06994 1.20205 0.89081 0.99224 1.00543 1.20752 0.97199 0.93978 1.02826 1.21190 0.96910 0.93949 0.99468 1.19309 0.90279 0.94327 1.05349 1.17593 0.84757 0.85823 0.86500 1.90501 1.33310 1.67262 1.59076 1.41880 1.06738 1.07562 1.60630 1.19849 0.94577 0.81290 1.46807 0.87399 1.25416 0.94550 1.01368 0.96583 1.69591 0.98038 1.37082 1.47711 0.85755 0.78101 0.81252 0.78650 1.20078 1.20597 1.19181 1.18607 0.85007 0.94206 1.04433 1.43095 1.04800 1.10520 1.60371 0.72530 0.89634 0.88854 0.90267 0.85664 0.85265 0.84861 0.76922 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.51 36.00 0.38 -0.34 16 2 C 0.27 4.14 8.08 -154.77 -1.25 2.89 16 3 N -0.50 -8.85 11.28 -8.23 -0.09 -8.94 16 4 C 0.04 0.68 7.22 -84.71 -0.61 0.07 16 5 C -0.07 -1.12 10.09 -39.16 -0.39 -1.51 16 6 C -0.13 -1.92 9.99 -39.69 -0.40 -2.32 16 7 C -0.09 -1.67 9.54 -39.09 -0.37 -2.05 16 8 C -0.09 -1.82 5.88 -104.95 -0.62 -2.43 16 9 C 0.46 11.47 7.71 -12.53 -0.10 11.37 16 10 O -0.61 -16.39 14.86 5.25 0.08 -16.31 16 11 N -0.54 -13.61 5.23 -11.96 -0.06 -13.68 16 12 C -0.30 -8.03 9.68 -15.00 -0.15 -8.18 16 13 H 0.11 3.05 7.15 -52.49 -0.38 2.67 16 14 C 0.02 0.64 5.50 -17.45 -0.10 0.54 16 15 N -0.89 -23.07 13.05 55.50 0.72 -22.34 16 16 Si 0.94 20.13 29.55 -169.99 -5.02 15.11 16 17 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 18 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 20 C 0.09 1.83 6.88 -83.75 -0.58 1.25 16 21 N -0.58 -10.28 6.00 -7.80 -0.05 -10.33 16 22 H 0.43 7.54 7.72 -40.82 -0.32 7.23 16 23 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 27 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.13 2.26 6.39 -52.49 -0.34 1.93 16 29 H 0.40 9.52 5.92 -40.82 -0.24 9.28 16 30 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 268.40 15.07 4.04 4.04 Total: -1.00 -31.62 268.40 -7.07 -38.70 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -2.52 Total: 14.46 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -4.18 Total: -0.71 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.52 Total: -55.29 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.08 Total: -16.31 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.62 -7.07 -38.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335926901.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.031 kcal (2) G-P(sol) polarization free energy of solvation -31.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds