Wall clock time and date at job start Sun Mar 29 2020 23:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40134 * 120.29413 * 2 1 4 4 C 1.35210 * 120.31907 * 179.97438 * 3 2 1 5 5 N 1.36246 * 120.69949 * 359.97438 * 4 3 2 6 6 N 1.40012 * 132.00649 * 180.02562 * 5 4 3 7 7 C 1.30725 * 109.63095 * 179.97438 * 6 5 4 8 8 C 1.40618 * 108.74254 * 359.75292 * 7 6 5 9 9 C 1.46470 * 126.59185 * 180.02562 * 8 7 6 10 10 O 1.21755 * 119.99996 * 180.40728 * 9 8 7 11 11 N 1.34780 * 119.99905 * 0.41126 * 9 8 7 12 12 C 1.36970 * 120.00022 * 180.02562 * 11 9 8 13 13 H 1.08003 * 119.99762 * 359.97438 * 12 11 9 14 14 C 1.38936 * 119.99713 * 180.02562 * 12 11 9 15 15 N 1.31438 * 120.00326 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99713 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47340 * 89.99943 * 16 14 12 18 18 H 1.48500 * 109.47337 * 210.00021 * 16 14 12 19 19 H 1.48495 * 109.47223 * 329.99817 * 16 14 12 20 20 C 1.36605 * 120.07634 * 0.02562 * 5 4 3 21 21 C 1.36491 * 120.29511 * 179.97438 * 2 1 3 22 22 H 1.09001 * 109.47144 * 90.00021 * 1 2 3 23 23 H 1.08998 * 109.47254 * 209.99515 * 1 2 3 24 24 H 1.08997 * 109.47400 * 330.00182 * 1 2 3 25 25 H 1.08006 * 119.84195 * 359.95923 * 3 2 1 26 26 H 1.07994 * 119.65526 * 179.97438 * 4 3 2 27 27 H 1.08004 * 125.63121 * 180.02562 * 7 6 5 28 28 H 0.96999 * 120.00403 * 359.97438 * 11 9 8 29 29 H 0.97007 * 119.99603 * 179.97438 * 15 14 12 30 30 H 1.07998 * 120.37149 * 0.03722 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2139 1.2100 0.0000 4 6 3.5660 1.2106 0.0005 5 7 4.2621 0.0394 0.0016 6 7 5.6352 -0.2346 0.0028 7 6 5.8250 -1.5280 0.0040 8 6 4.5731 -2.1683 0.0095 9 6 4.3313 -3.6129 0.0131 10 8 3.1909 -4.0393 0.0102 11 7 5.3713 -4.4702 0.0196 12 6 5.1453 -5.8211 0.0224 13 1 4.1337 -6.1994 0.0198 14 6 6.2174 -6.7048 0.0296 15 7 7.4485 -6.2445 0.0332 16 14 5.9091 -8.5472 0.0327 17 1 5.8340 -9.0389 -1.3665 18 1 7.0200 -9.2338 0.7397 19 1 4.6284 -8.8336 0.7274 20 6 3.5957 -1.1531 0.0016 21 6 2.1956 -1.1785 0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5137 24 1 -0.3634 0.8900 0.5138 25 1 1.6761 2.1466 -0.0007 26 1 4.0999 2.1493 0.0001 27 1 6.7849 -2.0230 0.0055 28 1 6.2799 -4.1306 0.0215 29 1 8.1970 -6.8615 0.0387 30 1 1.6665 -2.1200 0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335938969.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:13:49 Heat of formation + Delta-G solvation = 59.674804 kcal Electronic energy + Delta-G solvation = -16697.290120 eV Core-core repulsion = 13880.250418 eV Total energy + Delta-G solvation = -2817.039702 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.76320 -38.00691 -37.16020 -33.93739 -33.27235 -31.26161 -30.98485 -29.15360 -27.06147 -24.94865 -23.39538 -21.88166 -21.61819 -19.16097 -17.95811 -17.24209 -16.38901 -15.58667 -15.45551 -15.01293 -14.48348 -14.39264 -13.83927 -13.53686 -13.12083 -13.05491 -12.73595 -12.50514 -11.80122 -11.65178 -11.51173 -11.29031 -11.07350 -10.50811 -10.37952 -10.20035 -10.04125 -9.48736 -9.09421 -8.41839 -7.96399 -7.25898 -6.42695 -3.77385 0.87419 1.23254 2.45480 2.71536 3.22610 3.27854 3.33929 3.44980 4.17855 4.39464 4.48803 4.65449 4.73291 4.98052 5.25783 5.28920 5.38981 5.40484 5.52017 5.56886 5.70270 5.80277 5.91986 6.10844 6.41708 6.49638 6.65297 6.85572 7.09586 7.55160 7.78315 8.09315 8.64057 9.18517 9.57164 10.11276 10.75196 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.038498 B = 0.005605 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.135000 B = 4994.019569 C = 5706.003840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.071 4.071 3 C -0.161 4.161 4 C 0.105 3.895 5 N -0.275 5.275 6 N -0.328 5.328 7 C 0.102 3.898 8 C -0.262 4.262 9 C 0.516 3.484 10 O -0.604 6.604 11 N -0.552 5.552 12 C -0.292 4.292 13 H 0.106 0.894 14 C 0.021 3.979 15 N -0.898 5.898 16 Si 0.932 3.068 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.269 1.269 20 C 0.139 3.861 21 C -0.089 4.089 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.150 0.850 26 H 0.165 0.835 27 H 0.198 0.802 28 H 0.392 0.608 29 H 0.273 0.727 30 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.608 13.822 -0.067 15.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.076 4.076 3 C -0.183 4.183 4 C -0.021 4.021 5 N -0.042 5.042 6 N -0.150 5.150 7 C -0.077 4.077 8 C -0.277 4.277 9 C 0.304 3.696 10 O -0.492 6.492 11 N -0.186 5.186 12 C -0.422 4.422 13 H 0.123 0.877 14 C -0.181 4.181 15 N -0.539 5.539 16 Si 0.759 3.241 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.193 1.193 20 C 0.019 3.981 21 C -0.108 4.108 22 H 0.093 0.907 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.168 0.832 26 H 0.182 0.818 27 H 0.214 0.786 28 H 0.226 0.774 29 H 0.083 0.917 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.423 14.495 -0.061 16.286 hybrid contribution 0.337 -1.409 -0.016 1.448 sum -7.086 13.087 -0.077 14.882 Atomic orbital electron populations 1.20755 0.89976 1.03204 1.02722 1.19914 0.96981 0.92229 0.98511 1.20673 0.91844 0.99260 1.06523 1.21375 0.91948 0.88302 1.00504 1.45994 1.06327 1.05184 1.46671 1.77437 0.88201 1.17323 1.32083 1.24156 0.99276 0.90223 0.94046 1.20294 0.90628 0.94971 1.21767 1.16496 0.85604 0.83277 0.84268 1.90583 1.21884 1.78582 1.58104 1.41671 1.07437 1.06106 1.63387 1.19753 0.95077 0.80604 1.46746 0.87655 1.25295 0.94605 1.00873 0.97331 1.69623 0.98145 1.36144 1.49940 0.85819 0.78098 0.81759 0.78403 1.20365 1.20904 1.19350 1.19260 0.92991 0.85588 1.00267 1.20767 0.90258 0.99943 0.99872 0.90710 0.90832 0.91290 0.83216 0.81757 0.78574 0.77431 0.91747 0.82309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.03 36.01 0.36 -0.63 16 2 C -0.07 -0.89 5.89 -104.54 -0.62 -1.50 16 3 C -0.16 -1.70 9.67 -39.95 -0.39 -2.09 16 4 C 0.10 1.30 11.18 -16.67 -0.19 1.12 16 5 N -0.28 -4.72 3.86 -10.53 -0.04 -4.76 16 6 N -0.33 -6.00 12.57 30.76 0.39 -5.61 16 7 C 0.10 1.93 11.44 -17.13 -0.20 1.74 16 8 C -0.26 -5.67 6.17 -104.67 -0.65 -6.32 16 9 C 0.52 13.17 7.73 -12.94 -0.10 13.07 16 10 O -0.60 -16.93 15.28 5.14 0.08 -16.85 16 11 N -0.55 -14.51 5.27 -12.22 -0.06 -14.58 16 12 C -0.29 -8.22 9.68 -15.00 -0.15 -8.37 16 13 H 0.11 3.08 7.15 -52.48 -0.38 2.70 16 14 C 0.02 0.56 5.50 -17.46 -0.10 0.47 16 15 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 16 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 C 0.14 2.68 6.76 -84.05 -0.57 2.11 16 21 C -0.09 -1.49 9.38 -39.54 -0.37 -1.86 16 22 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 24 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 25 H 0.15 0.99 8.06 -52.48 -0.42 0.56 16 26 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 27 H 0.20 3.24 7.46 -52.48 -0.39 2.85 16 28 H 0.39 9.75 6.81 -40.82 -0.28 9.47 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.16 2.87 7.12 -52.49 -0.37 2.49 16 LS Contribution 271.63 15.07 4.09 4.09 Total: -1.00 -33.18 271.63 -5.46 -38.63 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -2.66 Total: 9.02 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -2.95 Total: -2.26 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 1.01 Total: -48.62 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: 0.08 Total: -16.85 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -33.18 -5.46 -38.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335938969.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.309 kcal (2) G-P(sol) polarization free energy of solvation -33.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds