Wall clock time and date at job start Sun Mar 29 2020 22:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86800 * 119.99868 * 2 1 4 4 H 1.48499 * 109.47208 * 270.00162 * 3 2 1 5 5 H 1.48500 * 109.47342 * 30.00708 * 3 2 1 6 6 H 1.48501 * 109.47243 * 150.00486 * 3 2 1 7 7 C 1.40049 * 120.00411 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00334 * 179.97438 * 7 2 1 9 9 C 1.46377 * 119.99460 * 359.97438 * 7 2 1 10 10 O 1.21684 * 120.00431 * 0.02562 * 9 7 2 11 11 N 1.34782 * 119.99401 * 180.02562 * 9 7 2 12 12 C 1.46505 * 119.99437 * 180.02562 * 11 9 7 13 13 C 1.50698 * 109.46720 * 180.02562 * 12 11 9 14 14 N 1.30112 * 124.94930 * 274.96756 * 13 12 11 15 15 C 1.35785 * 109.64631 * 180.02562 * 14 13 12 16 16 C 1.39735 * 133.60204 * 179.97438 * 15 14 13 17 17 C 1.36605 * 119.88505 * 180.02562 * 16 15 14 18 18 C 1.38772 * 120.67413 * 359.97438 * 17 16 15 19 19 C 1.37857 * 120.44773 * 359.97248 * 18 17 16 20 20 C 1.38836 * 119.69151 * 0.06034 * 19 18 17 21 21 N 1.36038 * 124.95255 * 94.99902 * 13 12 11 22 22 H 0.96999 * 126.35202 * 359.97261 * 21 13 12 23 23 H 0.97004 * 120.00087 * 359.97438 * 1 2 3 24 24 H 0.96994 * 120.00127 * 359.97438 * 11 9 7 25 25 H 1.08990 * 109.47828 * 59.99701 * 12 11 9 26 26 H 1.09003 * 109.46476 * 299.99529 * 12 11 9 27 27 H 1.08000 * 120.05646 * 359.97438 * 16 15 14 28 28 H 1.07999 * 119.66329 * 179.72373 * 17 16 15 29 29 H 1.07998 * 119.77865 * 180.02562 * 18 17 16 30 30 H 1.07997 * 120.15633 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4881 2.0465 -1.4001 5 1 1.4382 2.6527 0.7002 6 1 3.5383 1.4402 0.6999 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9491 -3.6476 -0.0005 12 6 1.2166 -4.9164 -0.0011 13 6 2.1959 -6.0618 -0.0004 14 7 2.7513 -6.5683 -1.0624 15 6 3.5782 -7.5842 -0.7048 16 6 4.4033 -8.4535 -1.4232 17 6 5.1347 -9.3994 -0.7625 18 6 5.0685 -9.5077 0.6194 19 6 4.2622 -8.6602 1.3488 20 6 3.5110 -7.6932 0.6945 21 7 2.6277 -6.7173 1.1107 22 1 2.3644 -6.5327 2.0259 23 1 -0.4850 0.8401 0.0004 24 1 2.9191 -3.6476 -0.0009 25 1 0.5902 -4.9740 -0.8912 26 1 0.5897 -4.9743 0.8887 27 1 4.4620 -8.3783 -2.4989 28 1 5.7678 -10.0723 -1.3217 29 1 5.6533 -10.2605 1.1270 30 1 4.2146 -8.7484 2.4241 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336023551.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:47 Heat of formation + Delta-G solvation = 28.322304 kcal Electronic energy + Delta-G solvation = -16278.280773 eV Core-core repulsion = 13459.881525 eV Total energy + Delta-G solvation = -2818.399248 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.08471 -37.70046 -37.02144 -33.47247 -33.10168 -32.33642 -30.01791 -29.63232 -27.19600 -25.32467 -22.42800 -22.05128 -20.83600 -19.78510 -17.99441 -17.34816 -17.08686 -15.52581 -15.45655 -15.07326 -14.36972 -14.24805 -14.02257 -13.97490 -13.49982 -12.67908 -12.18480 -12.12192 -11.77801 -11.58531 -11.50883 -11.19171 -10.96199 -10.69398 -10.51415 -10.26518 -9.89250 -8.89600 -8.43779 -8.19005 -7.68763 -7.68102 -6.24094 -4.69764 0.90924 1.48470 2.76274 2.91607 3.12903 3.19888 3.23144 3.85112 4.08018 4.19036 4.52641 4.58629 4.91355 4.94932 5.05892 5.28442 5.35859 5.41290 5.62789 5.71415 5.97086 6.01720 6.19599 6.37481 6.44653 6.51288 6.84809 7.34118 7.39324 7.78212 7.93151 7.97661 8.25551 8.97395 9.39782 10.51865 10.69875 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.046336 B = 0.004288 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.130718 B = 6528.723013 C = 6717.508490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.910 3.090 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.556 3.444 10 O -0.578 6.578 11 N -0.761 5.761 12 C 0.207 3.793 13 C 0.291 3.709 14 N -0.482 5.482 15 C 0.047 3.953 16 C -0.064 4.064 17 C -0.132 4.132 18 C -0.108 4.108 19 C -0.111 4.111 20 C 0.044 3.956 21 N -0.593 5.593 22 H 0.424 0.576 23 H 0.269 0.731 24 H 0.384 0.616 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.212 -15.379 2.953 18.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.734 3.266 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.087 0.913 9 C 0.361 3.639 10 O -0.461 6.461 11 N -0.419 5.419 12 C 0.081 3.919 13 C 0.024 3.976 14 N -0.202 5.202 15 C -0.072 4.072 16 C -0.083 4.083 17 C -0.153 4.153 18 C -0.128 4.128 19 C -0.132 4.132 20 C -0.067 4.067 21 N -0.204 5.204 22 H 0.263 0.737 23 H 0.080 0.920 24 H 0.216 0.784 25 H 0.106 0.894 26 H 0.089 0.911 27 H 0.146 0.854 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.984 -15.018 2.066 17.133 hybrid contribution 0.946 0.557 1.314 1.712 sum 8.930 -14.461 3.380 17.329 Atomic orbital electron populations 1.70012 1.07065 1.27432 1.34997 1.25707 0.94650 1.00331 0.92549 0.86337 0.80088 0.81198 0.78941 1.19631 1.20420 1.18918 1.20845 0.93660 0.89070 1.54303 0.91305 1.18258 0.87208 0.82037 0.76389 1.90613 1.13950 1.86480 1.55029 1.46215 1.08849 1.03592 1.83234 1.19375 0.89902 0.79310 1.03326 1.24040 0.97063 0.95740 0.80764 1.70534 1.11762 1.10341 1.27578 1.19213 1.00016 0.97472 0.90491 1.20039 0.94799 0.93599 0.99868 1.20607 1.00892 0.99384 0.94416 1.20834 0.98888 0.98975 0.94069 1.19949 0.98351 0.95475 0.99381 1.18945 0.97208 0.94850 0.95702 1.43187 1.37789 1.28872 1.10594 0.73694 0.91987 0.78435 0.89361 0.91093 0.85389 0.85542 0.85495 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.68 11.83 55.55 0.66 -22.02 16 2 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 3 Si 0.91 19.97 29.56 -169.99 -5.02 14.95 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.54 -15.16 9.54 -35.63 -0.34 -15.50 16 8 H 0.07 1.78 7.85 -52.49 -0.41 1.36 16 9 C 0.56 15.57 7.75 -12.98 -0.10 15.47 16 10 O -0.58 -18.28 15.02 5.20 0.08 -18.20 16 11 N -0.76 -16.92 5.54 -62.90 -0.35 -17.26 16 12 C 0.21 3.93 6.30 -5.19 -0.03 3.90 16 13 C 0.29 4.89 7.45 -154.82 -1.15 3.73 16 14 N -0.48 -8.74 11.27 -8.23 -0.09 -8.83 16 15 C 0.05 0.75 7.23 -84.70 -0.61 0.13 16 16 C -0.06 -0.82 10.05 -39.61 -0.40 -1.22 16 17 C -0.13 -1.35 9.96 -39.97 -0.40 -1.75 16 18 C -0.11 -1.04 10.03 -39.52 -0.40 -1.44 16 19 C -0.11 -1.22 10.07 -39.50 -0.40 -1.61 16 20 C 0.04 0.61 7.31 -83.98 -0.61 -0.01 16 21 N -0.59 -8.12 6.23 -8.00 -0.05 -8.17 16 22 H 0.42 4.53 8.96 -40.82 -0.37 4.17 16 23 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 24 H 0.38 7.91 8.44 -40.82 -0.34 7.56 16 25 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 26 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 27 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 28 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 29 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 30 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 274.01 15.07 4.13 4.13 Total: -1.00 -34.86 274.01 -7.98 -42.85 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -2.79 Total: 8.54 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -4.54 Total: 4.03 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.17 Total: -56.29 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: 0.08 Total: -18.20 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -34.86 -7.98 -42.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336023551.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.169 kcal (2) G-P(sol) polarization free energy of solvation -34.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds