Wall clock time and date at job start Sun Mar 29 2020 22:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99968 * 2 1 4 4 H 1.48496 * 109.47191 * 269.99996 * 3 2 1 5 5 H 1.48493 * 109.47118 * 30.00567 * 3 2 1 6 6 H 1.48502 * 109.46836 * 150.00158 * 3 2 1 7 7 C 1.37873 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00098 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99657 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46805 * 179.97438 * 9 7 2 11 11 C 1.34782 * 119.99931 * 179.97438 * 10 9 7 12 12 O 1.21597 * 120.00172 * 359.97438 * 11 10 9 13 13 C 1.47514 * 119.99872 * 179.97438 * 11 10 9 14 14 C 1.41041 * 119.39420 * 0.02562 * 13 11 10 15 15 C 1.35190 * 121.65224 * 179.74040 * 14 13 11 16 16 C 1.41382 * 119.93509 * 0.25795 * 15 14 13 17 17 N 1.31926 * 134.39783 * 180.02562 * 16 15 14 18 18 N 1.39920 * 109.06131 * 179.97438 * 17 16 15 19 19 H 0.97004 * 124.98085 * 179.97438 * 18 17 16 20 20 C 1.33813 * 110.02978 * 359.97438 * 18 17 16 21 21 C 1.38542 * 107.83811 * 0.02562 * 20 18 17 22 22 C 1.38223 * 119.39264 * 180.26403 * 13 11 10 23 23 H 0.97005 * 119.99563 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47266 * 60.00136 * 9 7 2 25 25 H 1.09004 * 109.46995 * 299.99317 * 9 7 2 26 26 H 0.97007 * 120.00295 * 359.97438 * 10 9 7 27 27 H 1.08002 * 119.17598 * 0.02562 * 14 13 11 28 28 H 1.07998 * 120.03277 * 180.27733 * 15 14 13 29 29 H 1.08001 * 126.08418 * 180.02562 * 20 18 17 30 30 H 1.08005 * 120.32607 * 359.97438 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 7 2.2029 -3.6126 -0.0027 11 6 1.7536 -4.8833 -0.0033 12 8 0.5581 -5.1056 -0.0026 13 6 2.7122 -6.0046 -0.0049 14 6 4.0961 -5.7322 -0.0052 15 6 5.0144 -6.7243 -0.0014 16 6 4.5945 -8.0743 -0.0025 17 7 5.2204 -9.2356 0.0007 18 7 4.2731 -10.2653 -0.0022 19 1 4.4815 -11.2127 -0.0011 20 6 3.0376 -9.7515 -0.0067 21 6 3.1522 -8.3708 -0.0074 22 6 2.2377 -7.3028 -0.0111 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5562 -0.8919 25 1 0.6240 -2.5574 0.8881 26 1 3.1566 -3.4354 -0.0029 27 1 4.4305 -4.7053 -0.0038 28 1 6.0677 -6.4859 0.0028 29 1 2.1151 -10.3131 -0.0093 30 1 1.1749 -7.4949 -0.0143 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336104507.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:40 Heat of formation + Delta-G solvation = 51.988935 kcal Electronic energy + Delta-G solvation = -16221.467084 eV Core-core repulsion = 13404.094098 eV Total energy + Delta-G solvation = -2817.372986 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.39529 -39.00960 -36.53020 -34.21096 -32.36123 -32.20355 -30.79846 -29.10773 -27.21654 -24.54533 -22.97006 -22.02724 -20.74266 -19.80998 -18.29813 -17.68257 -16.68073 -15.88819 -15.25144 -15.08947 -14.56675 -14.21151 -14.17312 -13.84311 -13.55131 -13.01359 -12.54158 -12.06900 -11.96349 -11.52117 -11.50727 -10.95101 -10.86181 -10.44820 -10.39232 -10.28711 -9.36409 -9.11609 -8.91293 -8.70337 -7.91714 -7.61229 -6.13589 -4.20259 0.45149 1.52169 2.27408 2.47290 3.27128 3.33185 3.35658 3.37960 3.98950 4.23457 4.25533 4.42393 4.43669 4.95061 5.09015 5.22737 5.26724 5.37114 5.55040 5.60542 6.06085 6.34789 6.41867 6.54616 6.73300 6.82601 7.35699 7.40178 7.47262 7.56026 7.70644 8.00336 8.66581 8.81401 9.13258 9.46296 10.96682 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.052887 B = 0.004297 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.301027 B = 6514.921692 C = 7029.074144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.707 5.707 11 C 0.543 3.457 12 O -0.559 6.559 13 C -0.162 4.162 14 C -0.046 4.046 15 C -0.117 4.117 16 C 0.118 3.882 17 N -0.314 5.314 18 N -0.427 5.427 19 H 0.443 0.557 20 C 0.096 3.904 21 C -0.216 4.216 22 C 0.023 3.977 23 H 0.266 0.734 24 H 0.028 0.972 25 H 0.029 0.971 26 H 0.390 0.610 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.192 0.808 30 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.532 -18.455 -0.020 20.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.355 5.355 11 C 0.330 3.670 12 O -0.440 6.440 13 C -0.167 4.167 14 C -0.069 4.069 15 C -0.138 4.138 16 C -0.036 4.036 17 N -0.142 5.142 18 N -0.126 5.126 19 H 0.287 0.713 20 C -0.062 4.062 21 C -0.226 4.226 22 C 0.002 3.998 23 H 0.075 0.925 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.224 0.776 27 H 0.151 0.849 28 H 0.150 0.850 29 H 0.209 0.791 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.698 -19.012 -0.009 20.907 hybrid contribution 0.176 0.852 -0.013 0.870 sum 8.875 -18.161 -0.023 20.213 Atomic orbital electron populations 1.69978 1.06109 1.27266 1.48969 1.24945 0.94907 0.99429 0.94710 0.86415 0.79645 0.82652 0.78210 1.20472 1.21042 1.19710 1.21232 0.93297 0.90455 1.53149 0.91856 1.19137 0.88314 0.81847 0.97875 1.46410 1.11184 1.06004 1.71863 1.18134 0.87891 0.83278 0.77743 1.90723 1.16300 1.85007 1.51938 1.19825 0.93556 0.93955 1.09352 1.20824 0.91739 0.99473 0.94864 1.19710 0.99920 0.87574 1.06574 1.21069 0.91693 0.93465 0.97411 1.77624 1.11233 0.94233 1.31136 1.46290 1.04065 1.10044 1.52249 0.71283 1.22828 0.90253 0.93984 0.99166 1.19601 0.94321 0.92451 1.16178 1.20670 0.98994 0.89557 0.90617 0.92471 0.95374 0.95350 0.77602 0.84894 0.85035 0.79133 0.84264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.66 5.43 -5.19 -0.03 6.63 16 10 N -0.71 -15.27 5.49 -62.53 -0.34 -15.61 16 11 C 0.54 11.37 7.75 -12.48 -0.10 11.27 16 12 O -0.56 -13.68 16.26 5.28 0.09 -13.60 16 13 C -0.16 -2.67 5.86 -105.06 -0.62 -3.29 16 14 C -0.05 -0.64 9.39 -39.60 -0.37 -1.02 16 15 C -0.12 -1.52 10.05 -39.47 -0.40 -1.92 16 16 C 0.12 1.61 7.49 -82.97 -0.62 0.99 16 17 N -0.31 -3.97 12.69 33.31 0.42 -3.54 16 18 N -0.43 -3.54 7.17 30.87 0.22 -3.32 16 19 H 0.44 1.78 8.96 -182.73 -1.64 0.15 16 20 C 0.10 0.80 12.09 -16.58 -0.20 0.60 16 21 C -0.22 -2.72 6.32 -105.23 -0.66 -3.39 16 22 C 0.02 0.34 9.64 -38.69 -0.37 -0.03 16 23 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.39 7.19 6.25 -40.82 -0.26 6.94 16 27 H 0.13 1.63 6.27 -52.49 -0.33 1.30 16 28 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.19 0.72 8.06 -52.49 -0.42 0.29 16 30 H 0.14 1.96 7.58 -52.48 -0.40 1.56 16 LS Contribution 271.87 15.07 4.10 4.10 Total: -1.00 -35.21 271.87 -7.43 -42.64 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -3.84 Total: 2.46 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -3.79 Total: -3.58 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 1.04 Total: -47.88 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.09 Total: -13.60 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -35.21 -7.43 -42.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336104507.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.628 kcal (2) G-P(sol) polarization free energy of solvation -35.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds