Wall clock time and date at job start Sun Mar 29 2020 22:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99968 * 2 1 4 4 H 1.48496 * 109.47191 * 269.99996 * 3 2 1 5 5 H 1.48493 * 109.47118 * 30.00567 * 3 2 1 6 6 H 1.48502 * 109.46836 * 150.00158 * 3 2 1 7 7 C 1.37873 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00098 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99657 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46805 * 179.97438 * 9 7 2 11 11 C 1.34782 * 119.99931 * 179.97438 * 10 9 7 12 12 O 1.21597 * 120.00172 * 359.97438 * 11 10 9 13 13 C 1.47514 * 119.99872 * 179.97438 * 11 10 9 14 14 C 1.41041 * 119.39420 * 0.02562 * 13 11 10 15 15 C 1.35190 * 121.65224 * 179.74040 * 14 13 11 16 16 C 1.41382 * 119.93509 * 0.25795 * 15 14 13 17 17 N 1.31926 * 134.39783 * 180.02562 * 16 15 14 18 18 N 1.39920 * 109.06131 * 179.97438 * 17 16 15 19 19 H 0.97004 * 124.98085 * 179.97438 * 18 17 16 20 20 C 1.33813 * 110.02978 * 359.97438 * 18 17 16 21 21 C 1.38542 * 107.83811 * 0.02562 * 20 18 17 22 22 C 1.38223 * 119.39264 * 180.26403 * 13 11 10 23 23 H 0.97005 * 119.99563 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47266 * 60.00136 * 9 7 2 25 25 H 1.09004 * 109.46995 * 299.99317 * 9 7 2 26 26 H 0.97007 * 120.00295 * 359.97438 * 10 9 7 27 27 H 1.08002 * 119.17598 * 0.02562 * 14 13 11 28 28 H 1.07998 * 120.03277 * 180.27733 * 15 14 13 29 29 H 1.08001 * 126.08418 * 180.02562 * 20 18 17 30 30 H 1.08005 * 120.32607 * 359.97438 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 7 2.2029 -3.6126 -0.0027 11 6 1.7536 -4.8833 -0.0033 12 8 0.5581 -5.1056 -0.0026 13 6 2.7122 -6.0046 -0.0049 14 6 4.0961 -5.7322 -0.0052 15 6 5.0144 -6.7243 -0.0014 16 6 4.5945 -8.0743 -0.0025 17 7 5.2204 -9.2356 0.0007 18 7 4.2731 -10.2653 -0.0022 19 1 4.4815 -11.2127 -0.0011 20 6 3.0376 -9.7515 -0.0067 21 6 3.1522 -8.3708 -0.0074 22 6 2.2377 -7.3028 -0.0111 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5562 -0.8919 25 1 0.6240 -2.5574 0.8881 26 1 3.1566 -3.4354 -0.0029 27 1 4.4305 -4.7053 -0.0038 28 1 6.0677 -6.4859 0.0028 29 1 2.1151 -10.3131 -0.0093 30 1 1.1749 -7.4949 -0.0143 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336104507.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:40 Heat of formation + Delta-G solvation = 25.238848 kcal Electronic energy + Delta-G solvation = -16222.627055 eV Core-core repulsion = 13404.094098 eV Total energy + Delta-G solvation = -2818.532957 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.29505 -40.59350 -37.69934 -36.16479 -34.35895 -33.18967 -31.83973 -30.28134 -29.05024 -25.87017 -24.40502 -23.55027 -21.66731 -21.37247 -19.39433 -19.03257 -17.85462 -17.61039 -16.98597 -16.29435 -16.16279 -15.79450 -15.32046 -14.98220 -14.87554 -14.20323 -13.98618 -13.91263 -13.85264 -12.89606 -12.78197 -12.65289 -12.51722 -12.19853 -11.46694 -11.40281 -11.37575 -10.85726 -10.78003 -9.94249 -9.76308 -8.67751 -8.26546 -6.43005 -0.47888 0.40192 1.36911 1.45560 1.48157 1.59362 1.80749 2.03215 2.34517 2.59655 2.94049 3.08686 3.24658 3.67037 3.95244 4.11132 4.24284 4.41102 4.46033 4.55619 5.09149 5.11855 5.27097 5.33819 5.36753 5.45546 5.50943 5.67514 5.77674 5.87088 6.22827 6.52002 6.67235 6.92679 7.25458 7.48196 8.85841 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.052887 B = 0.004297 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.301027 B = 6514.921692 C = 7029.074144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.266 3.734 10 N -0.703 5.703 11 C 0.543 3.457 12 O -0.605 6.605 13 C -0.196 4.196 14 C -0.050 4.050 15 C -0.117 4.117 16 C 0.103 3.897 17 N -0.343 5.343 18 N -0.407 5.407 19 H 0.464 0.536 20 C 0.144 3.856 21 C -0.252 4.252 22 C 0.042 3.958 23 H 0.269 0.731 24 H -0.010 1.010 25 H -0.010 1.010 26 H 0.406 0.594 27 H 0.143 0.857 28 H 0.151 0.849 29 H 0.246 0.754 30 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.593 -20.216 -0.016 22.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.595 4.595 8 H 0.102 0.898 9 C 0.143 3.857 10 N -0.353 5.353 11 C 0.333 3.667 12 O -0.489 6.489 13 C -0.201 4.201 14 C -0.073 4.073 15 C -0.138 4.138 16 C -0.051 4.051 17 N -0.171 5.171 18 N -0.107 5.107 19 H 0.313 0.687 20 C -0.017 4.017 21 C -0.262 4.262 22 C 0.020 3.980 23 H 0.078 0.922 24 H 0.008 0.992 25 H 0.008 0.992 26 H 0.243 0.757 27 H 0.160 0.840 28 H 0.169 0.831 29 H 0.262 0.738 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 10.840 -20.832 -0.006 23.484 hybrid contribution -0.508 1.075 -0.016 1.188 sum 10.332 -19.758 -0.022 22.296 Atomic orbital electron populations 1.70142 1.08262 1.28554 1.49974 1.26059 0.95784 1.03858 0.93810 0.85149 0.78509 0.76914 0.78602 1.19588 1.20928 1.17897 1.21622 0.94347 0.90547 1.52947 0.89798 1.18591 0.88672 0.84126 0.94306 1.46125 1.11242 1.05395 1.72510 1.18849 0.88136 0.83869 0.75864 1.90677 1.18581 1.85665 1.53989 1.19441 0.93604 0.92756 1.14270 1.20790 0.90640 1.00366 0.95492 1.19897 1.00611 0.87458 1.05825 1.21306 0.92397 0.93990 0.97422 1.77586 1.12609 0.94560 1.32358 1.46385 1.03624 1.10713 1.50012 0.68707 1.23625 0.91701 0.92525 0.93805 1.19792 0.93571 0.93979 1.18873 1.20739 0.99398 0.89581 0.88234 0.92235 0.99212 0.99187 0.75662 0.83960 0.83120 0.73770 0.84322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.99 42.75 29.54 68.60 2.03 44.78 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 6 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 7 C -0.56 -30.89 9.28 25.60 0.24 -30.65 16 8 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 9 C 0.27 15.04 5.43 85.63 0.46 15.51 16 10 N -0.70 -31.78 5.49 -470.01 -2.58 -34.36 16 11 C 0.54 23.87 7.75 86.69 0.67 24.54 16 12 O -0.60 -31.42 16.26 -4.02 -0.07 -31.49 16 13 C -0.20 -6.57 5.86 -20.15 -0.12 -6.69 16 14 C -0.05 -1.39 9.39 22.25 0.21 -1.18 16 15 C -0.12 -2.91 10.05 22.34 0.22 -2.69 16 16 C 0.10 2.61 7.49 42.27 0.32 2.92 16 17 N -0.34 -7.70 12.69 -48.54 -0.62 -8.32 16 18 N -0.41 -4.99 7.17 -56.25 -0.40 -5.40 16 19 H 0.46 1.53 8.96 -213.43 -1.91 -0.39 16 20 C 0.14 1.72 12.09 84.46 1.02 2.75 16 21 C -0.25 -5.76 6.32 -20.26 -0.13 -5.89 16 22 C 0.04 1.21 9.64 22.84 0.22 1.43 16 23 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 24 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 25 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 26 H 0.41 15.34 6.25 -92.70 -0.58 14.76 16 27 H 0.14 3.47 6.27 -2.91 -0.02 3.45 16 28 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 29 H 0.25 0.19 8.06 -2.91 -0.02 0.17 16 30 H 0.14 3.87 7.58 -2.91 -0.02 3.85 16 Total: -1.00 -80.89 271.87 0.94 -79.95 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -1.29 Total: 10.51 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 3.58 Total: 0.76 kcal Atomic # 7 Polarization: -101.19 SS G_CDS: -3.32 Total: -104.51 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.07 Total: -31.49 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -80.89 0.94 -79.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336104507.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.193 kcal (2) G-P(sol) polarization free energy of solvation -80.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds