Wall clock time and date at job start Sun Mar 29 2020 23:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36971 * 120.00122 * 2 1 4 4 H 1.07999 * 120.00443 * 169.49461 * 3 2 1 5 5 C 1.38971 * 119.99804 * 349.48867 * 3 2 1 6 6 N 1.31428 * 119.99959 * 5.74937 * 5 3 2 7 7 Si 1.86803 * 119.99995 * 185.74679 * 5 3 2 8 8 H 1.48491 * 109.46977 * 60.00137 * 7 5 3 9 9 H 1.48495 * 109.46878 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46841 * 300.00320 * 7 5 3 11 11 C 1.34782 * 119.99953 * 179.97438 * 2 1 3 12 12 O 1.21686 * 120.00042 * 4.45387 * 11 2 1 13 13 C 1.46854 * 119.99735 * 184.45617 * 11 2 1 14 14 C 1.36553 * 126.73097 * 315.99105 * 13 11 2 15 15 N 1.35382 * 109.75404 * 179.97438 * 14 13 11 16 16 H 0.96998 * 124.81775 * 179.97438 * 15 14 13 17 17 C 1.37864 * 110.35704 * 0.02562 * 15 14 13 18 18 C 1.39230 * 133.46461 * 180.02562 * 17 15 14 19 19 C 1.38340 * 118.29921 * 179.97438 * 18 17 15 20 20 C 1.38605 * 119.64256 * 359.97438 * 19 18 17 21 21 N 1.31627 * 121.19140 * 0.02562 * 20 19 18 22 22 C 1.32693 * 121.42520 * 359.97438 * 21 20 19 23 23 H 1.09001 * 109.47107 * 183.40459 * 1 2 3 24 24 H 1.09006 * 109.47490 * 303.40836 * 1 2 3 25 25 H 1.09005 * 109.47133 * 63.40682 * 1 2 3 26 26 H 0.96998 * 119.99929 * 179.97438 * 6 5 3 27 27 H 1.08005 * 125.11941 * 359.97438 * 14 13 11 28 28 H 1.08002 * 120.84956 * 359.94594 * 18 17 15 29 29 H 1.07998 * 120.17613 * 180.02562 * 19 18 17 30 30 H 1.07994 * 119.40093 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1498 1.1862 0.0000 4 1 3.2162 1.1941 0.1705 5 6 1.4724 2.3796 -0.2196 6 7 0.1616 2.3833 -0.3146 7 14 2.4251 3.9785 -0.3796 8 1 3.3638 3.8827 -1.5261 9 1 1.4772 5.0986 -0.6075 10 1 3.1913 4.2251 0.8684 11 6 2.1388 -1.1672 0.0005 12 8 1.5332 -2.2195 -0.0808 13 6 3.6041 -1.1691 0.0993 14 6 4.4690 -0.3543 -0.5736 15 7 5.7427 -0.6502 -0.2231 16 1 6.5307 -0.2042 -0.5710 17 6 5.7608 -1.6763 0.6975 18 6 6.7826 -2.3453 1.3661 19 6 6.4387 -3.3543 2.2477 20 6 5.1029 -3.6697 2.4414 21 7 4.1506 -3.0259 1.8002 22 6 4.4296 -2.0508 0.9446 23 1 -0.3633 -1.0259 0.0610 24 1 -0.3634 0.5659 0.8579 25 1 -0.3634 0.4601 -0.9190 26 1 -0.3112 3.2163 -0.4674 27 1 4.1803 0.4108 -1.2791 28 1 7.8172 -2.0835 1.2002 29 1 7.2068 -3.8929 2.7828 30 1 4.8389 -4.4578 3.1309 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336460473.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:11 Heat of formation + Delta-G solvation = 32.162274 kcal Electronic energy + Delta-G solvation = -17214.809472 eV Core-core repulsion = 14396.576738 eV Total energy + Delta-G solvation = -2818.232735 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.52173 -40.06162 -38.69111 -36.67694 -33.70567 -33.31255 -31.21226 -30.52838 -28.18414 -26.54281 -24.64485 -23.39796 -23.04259 -20.67858 -19.52552 -18.38385 -17.65158 -17.42519 -16.89842 -16.16341 -16.02465 -15.81523 -15.49152 -15.39664 -14.39719 -14.00639 -13.85434 -13.51317 -13.45589 -13.35932 -13.00661 -12.71341 -12.59609 -12.25105 -12.11826 -11.13962 -10.99861 -10.54899 -10.09605 -9.90339 -9.36768 -8.95219 -8.18740 -5.85472 0.08674 0.44665 1.25467 1.47988 1.53285 1.59936 2.08147 2.27729 2.33193 3.01013 3.08308 3.29235 3.48359 3.85122 4.09790 4.17204 4.23290 4.52954 4.61596 4.78023 4.81849 5.07715 5.14448 5.22748 5.39638 5.42290 5.45540 5.55286 5.79392 6.00605 6.46204 6.62147 7.13322 7.28973 7.63713 8.04511 8.76928 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.028172 B = 0.007814 C = 0.006510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.661084 B = 3582.470618 C = 4299.985842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.139 3.861 2 N -0.455 5.455 3 C -0.353 4.353 4 H 0.122 0.878 5 C -0.014 4.014 6 N -0.907 5.907 7 Si 0.999 3.001 8 H -0.249 1.249 9 H -0.287 1.287 10 H -0.269 1.269 11 C 0.508 3.492 12 O -0.648 6.648 13 C -0.228 4.228 14 C 0.135 3.865 15 N -0.554 5.554 16 H 0.442 0.558 17 C 0.030 3.970 18 C -0.069 4.069 19 C -0.153 4.153 20 C 0.076 3.924 21 N -0.504 5.504 22 C 0.083 3.917 23 H 0.025 0.975 24 H 0.046 0.954 25 H 0.065 0.935 26 H 0.269 0.731 27 H 0.209 0.791 28 H 0.180 0.820 29 H 0.185 0.815 30 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.668 -1.221 1.284 17.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 N -0.171 5.171 3 C -0.480 4.480 4 H 0.140 0.860 5 C -0.215 4.215 6 N -0.546 5.546 7 Si 0.821 3.179 8 H -0.173 1.173 9 H -0.212 1.212 10 H -0.194 1.194 11 C 0.299 3.701 12 O -0.538 6.538 13 C -0.238 4.238 14 C 0.001 3.999 15 N -0.159 5.159 16 H 0.285 0.715 17 C -0.079 4.079 18 C -0.098 4.098 19 C -0.174 4.174 20 C -0.090 4.090 21 N -0.213 5.213 22 C -0.049 4.049 23 H 0.043 0.957 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.226 0.774 28 H 0.197 0.803 29 H 0.203 0.797 30 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 16.361 -1.655 1.260 16.493 hybrid contribution 0.347 1.095 -0.239 1.173 sum 16.708 -0.560 1.021 16.749 Atomic orbital electron populations 1.21325 0.80364 0.96430 1.02346 1.43853 1.06125 1.05482 1.61675 1.20409 0.95309 0.83179 1.49105 0.86050 1.26381 0.96636 1.02963 0.95500 1.70348 1.08042 1.28489 1.47755 0.84904 0.77768 0.75614 0.79592 1.17255 1.21202 1.19378 1.17546 0.87095 0.83008 0.82444 1.90563 1.70837 1.33015 1.59425 1.19938 0.92527 1.03712 1.07659 1.22480 0.82029 0.97193 0.98238 1.41216 1.07954 1.30351 1.36382 0.71542 1.19278 0.95954 0.94961 0.97682 1.21027 0.98625 0.94932 0.95174 1.22288 0.97540 0.98259 0.99272 1.23253 0.89485 0.98570 0.97667 1.66951 1.40099 1.06980 1.07291 1.19862 0.91537 0.95840 0.97704 0.95677 0.93511 0.91682 0.92092 0.77439 0.80303 0.79737 0.80696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 7.76 8.87 127.77 1.13 8.89 16 2 N -0.45 -25.57 3.02 -663.23 -2.00 -27.57 16 3 C -0.35 -18.11 8.59 84.07 0.72 -17.39 16 4 H 0.12 5.58 4.77 -2.91 -0.01 5.57 16 5 C -0.01 -0.71 5.46 84.93 0.46 -0.25 16 6 N -0.91 -48.20 9.51 21.67 0.21 -48.00 16 7 Si 1.00 37.60 29.56 68.60 2.03 39.63 16 8 H -0.25 -8.37 7.11 99.48 0.71 -7.66 16 9 H -0.29 -10.94 7.11 99.48 0.71 -10.23 16 10 H -0.27 -9.85 7.11 99.48 0.71 -9.15 16 11 C 0.51 28.98 7.54 86.50 0.65 29.63 16 12 O -0.65 -41.56 16.45 -4.30 -0.07 -41.63 16 13 C -0.23 -10.70 5.51 -19.00 -0.10 -10.81 16 14 C 0.13 4.68 9.47 83.75 0.79 5.47 16 15 N -0.55 -14.18 5.98 -186.93 -1.12 -15.29 16 16 H 0.44 6.48 8.96 -92.71 -0.83 5.65 16 17 C 0.03 0.92 7.27 38.98 0.28 1.20 16 18 C -0.07 -1.46 10.19 22.53 0.23 -1.23 16 19 C -0.15 -3.17 10.09 22.38 0.23 -2.95 16 20 C 0.08 2.29 11.16 84.81 0.95 3.24 16 21 N -0.50 -21.94 10.41 -184.60 -1.92 -23.86 16 22 C 0.08 3.60 7.51 41.98 0.32 3.92 16 23 H 0.02 1.40 6.92 -2.39 -0.02 1.38 16 24 H 0.05 2.65 7.34 -2.38 -0.02 2.63 16 25 H 0.06 3.66 6.78 -2.38 -0.02 3.64 16 26 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 27 H 0.21 6.41 7.06 -2.91 -0.02 6.39 16 28 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 29 H 0.19 1.95 8.06 -2.91 -0.02 1.92 16 30 H 0.18 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -81.31 262.25 3.14 -78.17 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.36 Total: 18.83 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: 5.66 Total: 19.72 kcal Atomic # 7 Polarization: -109.88 SS G_CDS: -4.84 Total: -114.72 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -0.07 Total: -41.63 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal Total: -81.31 3.14 -78.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336460473.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.330 kcal (2) G-P(sol) polarization free energy of solvation -81.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds