Wall clock time and date at job start Sun Mar 29 2020 22:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86803 * 119.99645 * 2 1 4 4 H 1.48494 * 109.47221 * 274.98530 * 3 2 1 5 5 H 1.48495 * 109.46948 * 34.98612 * 3 2 1 6 6 H 1.48500 * 109.47032 * 154.98272 * 3 2 1 7 7 C 1.40042 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00142 * 186.15280 * 7 2 1 9 9 C 1.46373 * 120.00502 * 6.14868 * 7 2 1 10 10 O 1.21692 * 119.99460 * 353.93729 * 9 7 2 11 11 N 1.34775 * 120.00414 * 173.94135 * 9 7 2 12 12 C 1.46498 * 120.00015 * 179.97438 * 11 9 7 13 13 C 1.50700 * 109.47032 * 180.02562 * 12 11 9 14 14 C 1.38546 * 126.21503 * 260.00173 * 13 12 11 15 15 N 1.31481 * 109.00913 * 179.97438 * 14 13 12 16 16 N 1.40046 * 108.91266 * 0.02562 * 15 14 13 17 17 C 1.36540 * 132.42970 * 179.97438 * 16 15 14 18 18 C 1.34935 * 120.65735 * 179.97438 * 17 16 15 19 19 C 1.40467 * 120.43053 * 0.02562 * 18 17 16 20 20 C 1.36062 * 119.59329 * 0.02562 * 19 18 17 21 21 C 1.37127 * 107.44407 * 359.97438 * 16 15 14 22 22 H 0.96997 * 120.00446 * 359.97438 * 1 2 3 23 23 H 0.96993 * 119.99736 * 0.02562 * 11 9 7 24 24 H 1.08996 * 109.47019 * 60.00333 * 12 11 9 25 25 H 1.08992 * 109.47474 * 300.00067 * 12 11 9 26 26 H 1.08003 * 125.49994 * 359.97438 * 14 13 12 27 27 H 1.07994 * 119.67213 * 0.02562 * 17 16 15 28 28 H 1.08003 * 119.78272 * 179.74545 * 18 17 16 29 29 H 1.08006 * 120.20655 * 179.97438 * 19 18 17 30 30 H 1.08002 * 120.38702 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3828 2.1073 -1.3947 5 1 1.4947 2.6199 0.8028 6 1 3.5869 1.4122 0.5921 7 6 2.0070 -1.2128 -0.0005 8 1 3.0824 -1.2155 0.0997 9 6 1.2815 -2.4768 -0.1369 10 8 0.0646 -2.4827 -0.1388 11 7 1.9613 -3.6340 -0.2602 12 6 1.2351 -4.8991 -0.3961 13 6 2.2202 -6.0333 -0.5161 14 6 2.6095 -6.6586 -1.6895 15 7 3.4816 -7.6002 -1.4040 16 7 3.6911 -7.6202 -0.0195 17 6 4.4835 -8.3917 0.7813 18 6 4.5027 -8.2030 2.1172 19 6 3.7056 -7.2080 2.7068 20 6 2.9099 -6.4319 1.9220 21 6 2.9029 -6.6416 0.5297 22 1 -0.4850 0.8400 0.0004 23 1 2.9312 -3.6293 -0.2583 24 1 0.6095 -4.8649 -1.2879 25 1 0.6082 -5.0543 0.4818 26 1 2.2541 -6.4123 -2.6792 27 1 5.1017 -9.1600 0.3410 28 1 5.1318 -8.8241 2.7378 29 1 3.7235 -7.0603 3.7766 30 1 2.2922 -5.6628 2.3617 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336558183.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:36 Heat of formation + Delta-G solvation = 65.301672 kcal Electronic energy + Delta-G solvation = -16561.358686 eV Core-core repulsion = 13744.562983 eV Total energy + Delta-G solvation = -2816.795702 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.92756 -37.45887 -36.94113 -33.92334 -32.53315 -31.90826 -30.63254 -29.03175 -26.48536 -24.50464 -23.74421 -22.41744 -20.52668 -19.53988 -17.45202 -16.92265 -16.58228 -15.86375 -15.55338 -15.22742 -14.69074 -14.28179 -13.89917 -13.57369 -13.13293 -12.69197 -12.22416 -12.10165 -11.81478 -11.48349 -11.28934 -11.12743 -10.89170 -10.55845 -10.36638 -10.34962 -10.17153 -9.30298 -8.80731 -7.74011 -7.41153 -7.30738 -6.14267 -4.58546 0.77398 1.10912 2.30810 2.77670 3.16617 3.23796 3.27238 3.39362 4.15749 4.25414 4.63661 4.65787 4.69670 4.87194 5.08811 5.21867 5.42123 5.53481 5.58737 5.70039 5.86239 6.00996 6.17618 6.38683 6.45423 6.64959 6.72305 6.91932 7.48116 7.63248 8.00527 8.17667 8.40172 9.07383 9.61759 10.64857 10.84071 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.034268 B = 0.005116 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.896689 B = 5472.112365 C = 5743.268672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.089 3.911 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.066 0.934 9 C 0.555 3.445 10 O -0.582 6.582 11 N -0.763 5.763 12 C 0.213 3.787 13 C -0.246 4.246 14 C 0.090 3.910 15 N -0.327 5.327 16 N -0.278 5.278 17 C 0.104 3.896 18 C -0.165 4.165 19 C -0.096 4.096 20 C -0.097 4.097 21 C 0.110 3.890 22 H 0.267 0.733 23 H 0.379 0.621 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.192 0.808 27 H 0.163 0.837 28 H 0.151 0.849 29 H 0.139 0.861 30 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.151 -14.260 3.721 17.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.359 3.641 10 O -0.466 6.466 11 N -0.419 5.419 12 C 0.088 3.912 13 C -0.257 4.257 14 C -0.086 4.086 15 N -0.151 5.151 16 N -0.045 5.045 17 C -0.021 4.021 18 C -0.187 4.187 19 C -0.118 4.118 20 C -0.116 4.116 21 C -0.009 4.009 22 H 0.078 0.922 23 H 0.210 0.790 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.209 0.791 27 H 0.181 0.819 28 H 0.168 0.832 29 H 0.157 0.843 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 8.777 -15.092 3.074 17.727 hybrid contribution 0.523 1.354 0.271 1.476 sum 9.299 -13.738 3.344 16.923 Atomic orbital electron populations 1.70028 1.07039 1.27152 1.35537 1.25686 0.94560 1.00192 0.92635 0.86393 0.80237 0.81651 0.78660 1.19832 1.20488 1.18960 1.20893 0.94054 0.89662 1.53728 0.91527 1.18219 0.87123 0.82387 0.76390 1.90597 1.14085 1.86472 1.55406 1.46260 1.08582 1.05379 1.81654 1.18999 0.90801 0.80701 1.00745 1.20308 1.09006 1.05906 0.90493 1.23760 0.93104 0.91956 0.99803 1.77839 1.24825 1.25894 0.86526 1.46197 1.28270 1.23329 1.06688 1.21395 0.94739 0.95882 0.90061 1.20794 1.03346 1.01649 0.92877 1.21126 0.95297 0.94648 1.00775 1.20782 1.00384 1.00752 0.89707 1.19421 0.95176 0.92104 0.94224 0.92187 0.78963 0.92401 0.92936 0.79113 0.81920 0.83173 0.84318 0.83233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.21 11.85 55.55 0.66 -22.55 16 2 C 0.09 2.50 5.49 -17.37 -0.10 2.40 16 3 Si 0.91 20.30 29.56 -169.99 -5.03 15.28 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.55 -15.60 9.53 -35.63 -0.34 -15.94 16 8 H 0.07 1.76 7.86 -52.48 -0.41 1.35 16 9 C 0.56 15.93 7.74 -12.99 -0.10 15.83 16 10 O -0.58 -18.97 15.05 5.20 0.08 -18.89 16 11 N -0.76 -17.45 5.54 -62.91 -0.35 -17.80 16 12 C 0.21 4.24 6.16 -5.20 -0.03 4.21 16 13 C -0.25 -4.13 5.55 -104.25 -0.58 -4.71 16 14 C 0.09 1.39 11.87 -17.59 -0.21 1.18 16 15 N -0.33 -5.16 12.66 30.46 0.39 -4.78 16 16 N -0.28 -4.05 3.90 -10.71 -0.04 -4.09 16 17 C 0.10 1.11 11.19 -16.63 -0.19 0.92 16 18 C -0.16 -1.43 9.98 -39.92 -0.40 -1.83 16 19 C -0.10 -0.95 10.07 -39.52 -0.40 -1.35 16 20 C -0.10 -1.28 10.09 -39.40 -0.40 -1.68 16 21 C 0.11 1.70 6.76 -84.27 -0.57 1.13 16 22 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 23 H 0.38 7.99 8.44 -40.82 -0.34 7.64 16 24 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 25 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.19 2.42 8.06 -52.48 -0.42 2.00 16 27 H 0.16 1.25 8.06 -52.49 -0.42 0.82 16 28 H 0.15 0.76 8.06 -52.48 -0.42 0.33 16 29 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 30 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 275.48 15.07 4.15 4.15 Total: -1.00 -36.19 275.48 -6.30 -42.48 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -2.85 Total: 6.02 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -3.30 Total: 0.18 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: 0.65 Total: -49.22 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.08 Total: -18.89 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.28 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -36.19 -6.30 -42.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336558183.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.786 kcal (2) G-P(sol) polarization free energy of solvation -36.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds