Wall clock time and date at job start Sun Mar 29 2020 23:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00297 * 2 1 4 4 H 1.48501 * 109.46989 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47015 * 299.99556 * 3 2 1 6 6 H 1.48501 * 109.47360 * 59.99558 * 3 2 1 7 7 C 1.37881 * 119.99611 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99857 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00005 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47110 * 179.97438 * 9 7 2 11 11 C 1.38024 * 120.00056 * 179.97438 * 10 9 7 12 12 N 1.33075 * 120.85742 * 0.02562 * 11 10 9 13 13 C 1.31871 * 121.07960 * 180.02562 * 12 11 10 14 14 N 1.31760 * 122.70646 * 0.02562 * 13 12 11 15 15 C 1.33054 * 120.73777 * 359.97438 * 14 13 12 16 16 N 1.37336 * 121.12318 * 180.27742 * 15 14 13 17 17 H 0.97007 * 119.67593 * 359.93149 * 16 15 14 18 18 C 1.37652 * 120.65160 * 180.31405 * 16 15 14 19 19 N 1.31212 * 119.71646 * 179.72598 * 18 16 15 20 20 C 1.46200 * 120.56950 * 359.40456 * 18 16 15 21 21 C 1.35443 * 119.56152 * 0.29380 * 20 18 16 22 22 C 1.40618 * 118.69762 * 359.97438 * 15 14 13 23 23 H 0.97009 * 119.99922 * 0.02562 * 1 2 3 24 24 H 1.08991 * 109.47337 * 60.00055 * 9 7 2 25 25 H 1.08998 * 109.47239 * 299.99363 * 9 7 2 26 26 H 0.97005 * 119.99672 * 0.02562 * 10 9 7 27 27 H 1.08000 * 118.64577 * 179.97438 * 13 12 11 28 28 H 0.97007 * 119.99794 * 179.68579 * 19 18 16 29 29 H 1.07998 * 120.21662 * 180.27315 * 20 18 16 30 30 H 1.07996 * 120.53408 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2028 -3.6128 0.0005 11 6 1.7427 -4.9140 0.0011 12 7 0.4381 -5.1767 0.0011 13 6 -0.0064 -6.4182 0.0021 14 7 0.7975 -7.4622 0.0036 15 6 2.1185 -7.3033 0.0037 16 7 2.9637 -8.3858 -0.0003 17 1 2.5950 -9.2830 -0.0023 18 6 4.3290 -8.2102 0.0063 19 7 5.1195 -9.2574 0.0077 20 6 4.9059 -6.8668 0.0048 21 6 4.0870 -5.7879 0.0028 22 6 2.6416 -5.9980 0.0016 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 3.1565 -3.4355 0.0009 27 1 -1.0732 -6.5862 0.0025 28 1 6.0822 -9.1384 0.0078 29 1 5.9779 -6.7356 0.0055 30 1 4.4963 -4.7885 0.0020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336691938.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:44:01 Heat of formation + Delta-G solvation = 86.089303 kcal Electronic energy + Delta-G solvation = -16546.090539 eV Core-core repulsion = 13762.489007 eV Total energy + Delta-G solvation = -2783.601532 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.097 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.09059 -38.40029 -36.28751 -33.73399 -33.56602 -32.55904 -31.20128 -29.20404 -26.92086 -24.64751 -23.37814 -22.86930 -21.93981 -19.43450 -18.62398 -17.29316 -16.80981 -15.80604 -15.71976 -15.42944 -15.28585 -14.74992 -13.96636 -13.69506 -13.50690 -13.28971 -12.93073 -12.65335 -12.19881 -11.30244 -11.02774 -10.94226 -10.50051 -10.41816 -10.36701 -9.79118 -9.55179 -9.48502 -8.90244 -8.74085 -8.06990 -7.29367 -6.30881 -4.38858 0.72578 1.42283 2.01130 2.61458 3.15276 3.17861 3.22982 3.25209 3.63652 4.22282 4.28311 4.38832 4.52416 4.69839 4.78965 5.06331 5.17276 5.23571 5.40036 5.88002 6.05600 6.15980 6.36678 6.79002 6.85444 7.07887 7.31869 7.38237 7.41322 7.77429 7.82178 8.18794 8.24029 8.57879 8.75789 9.27808 10.78897 Molecular weight = 245.10amu Principal moments of inertia in cm(-1) A = 0.035035 B = 0.005282 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.006381 B = 5299.920118 C = 6083.781746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.068 3.932 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.551 4.551 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.665 5.665 11 C 0.489 3.511 12 N -0.591 5.591 13 C 0.390 3.610 14 N -0.617 5.617 15 C 0.460 3.540 16 N -0.596 5.596 17 H 0.422 0.578 18 C 0.446 3.554 19 N -0.782 5.782 20 C -0.236 4.236 21 C 0.006 3.994 22 C -0.313 4.313 23 H 0.267 0.733 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.404 0.596 27 H 0.198 0.802 28 H 0.351 0.649 29 H 0.143 0.857 30 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.607 -10.304 0.002 11.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.137 4.137 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.590 4.590 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.287 5.287 11 C 0.238 3.762 12 N -0.320 5.320 13 C 0.099 3.901 14 N -0.347 5.347 15 C 0.220 3.780 16 N -0.221 5.221 17 H 0.261 0.739 18 C 0.169 3.831 19 N -0.413 5.413 20 C -0.260 4.260 21 C -0.019 4.019 22 C -0.329 4.329 23 H 0.077 0.923 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.241 0.759 27 H 0.215 0.785 28 H 0.167 0.833 29 H 0.160 0.840 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.312 -11.026 0.000 11.839 hybrid contribution 2.102 1.622 0.007 2.655 sum 6.414 -9.404 0.007 11.384 Atomic orbital electron populations 1.69966 1.06072 1.27450 1.48330 1.24907 0.94928 0.99444 0.94396 0.86349 0.79822 0.82805 0.77889 1.19628 1.20677 1.20682 1.21211 0.93331 0.90344 1.54068 0.91843 1.19347 0.87945 0.81059 0.98572 1.45585 1.11016 1.02338 1.69764 1.18554 0.88112 0.85927 0.83599 1.68221 1.13700 1.23590 1.26447 1.24541 0.99687 0.81418 0.84458 1.67984 1.01231 1.36265 1.29171 1.17879 0.88184 0.84918 0.87058 1.41091 1.02876 1.08620 1.69517 0.73940 1.19583 0.83608 0.90285 0.89623 1.69433 1.10360 1.30995 1.30524 1.22719 0.99998 0.90796 1.12454 1.21930 0.90789 0.99088 0.90069 1.19044 0.94643 0.92527 1.26679 0.92314 0.94629 0.94624 0.75916 0.78534 0.83290 0.83961 0.84832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.35 13.29 55.43 0.74 -23.62 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 19.82 29.54 -169.99 -5.02 14.80 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.55 -13.90 9.28 -34.44 -0.32 -14.22 16 8 H 0.06 1.51 7.60 -52.49 -0.40 1.11 16 9 C 0.25 5.97 5.48 -5.19 -0.03 5.94 16 10 N -0.67 -12.68 5.62 -61.23 -0.34 -13.02 16 11 C 0.49 8.85 7.53 -154.74 -1.17 7.69 16 12 N -0.59 -10.90 9.70 -13.59 -0.13 -11.03 16 13 C 0.39 5.94 12.24 -92.12 -1.13 4.82 16 14 N -0.62 -9.47 10.47 -13.82 -0.14 -9.62 16 15 C 0.46 7.12 7.70 -155.50 -1.20 5.93 16 16 N -0.60 -8.24 5.43 -10.21 -0.06 -8.29 16 17 H 0.42 5.31 8.92 -40.82 -0.36 4.95 16 18 C 0.45 6.05 7.92 -154.47 -1.22 4.83 16 19 N -0.78 -10.55 14.16 32.21 0.46 -10.09 16 20 C -0.24 -2.85 10.05 -37.38 -0.38 -3.22 16 21 C 0.01 0.07 9.72 -37.45 -0.36 -0.29 16 22 C -0.31 -4.97 5.89 -104.89 -0.62 -5.59 16 23 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 24 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.40 6.71 6.53 -40.82 -0.27 6.45 16 27 H 0.20 2.22 8.06 -52.49 -0.42 1.80 16 28 H 0.35 4.03 8.75 -40.82 -0.36 3.67 16 29 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.13 1.47 6.64 -52.49 -0.35 1.12 16 LS Contribution 269.94 15.07 4.07 4.07 Total: -1.00 -29.00 269.94 -9.51 -38.52 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -2.56 Total: 10.73 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: -6.52 Total: 7.55 kcal Atomic # 7 Polarization: -76.19 SS G_CDS: 0.52 Total: -75.67 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.00 -9.51 -38.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336691938.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.607 kcal (2) G-P(sol) polarization free energy of solvation -29.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds