Wall clock time and date at job start Sun Mar 29 2020 23:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00297 * 2 1 4 4 H 1.48501 * 109.46989 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47015 * 299.99556 * 3 2 1 6 6 H 1.48501 * 109.47360 * 59.99558 * 3 2 1 7 7 C 1.37881 * 119.99611 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99857 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00005 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47110 * 179.97438 * 9 7 2 11 11 C 1.38024 * 120.00056 * 179.97438 * 10 9 7 12 12 N 1.33075 * 120.85742 * 0.02562 * 11 10 9 13 13 C 1.31871 * 121.07960 * 180.02562 * 12 11 10 14 14 N 1.31760 * 122.70646 * 0.02562 * 13 12 11 15 15 C 1.33054 * 120.73777 * 359.97438 * 14 13 12 16 16 N 1.37336 * 121.12318 * 180.27742 * 15 14 13 17 17 H 0.97007 * 119.67593 * 359.93149 * 16 15 14 18 18 C 1.37652 * 120.65160 * 180.31405 * 16 15 14 19 19 N 1.31212 * 119.71646 * 179.72598 * 18 16 15 20 20 C 1.46200 * 120.56950 * 359.40456 * 18 16 15 21 21 C 1.35443 * 119.56152 * 0.29380 * 20 18 16 22 22 C 1.40618 * 118.69762 * 359.97438 * 15 14 13 23 23 H 0.97009 * 119.99922 * 0.02562 * 1 2 3 24 24 H 1.08991 * 109.47337 * 60.00055 * 9 7 2 25 25 H 1.08998 * 109.47239 * 299.99363 * 9 7 2 26 26 H 0.97005 * 119.99672 * 0.02562 * 10 9 7 27 27 H 1.08000 * 118.64577 * 179.97438 * 13 12 11 28 28 H 0.97007 * 119.99794 * 179.68579 * 19 18 16 29 29 H 1.07998 * 120.21662 * 180.27315 * 20 18 16 30 30 H 1.07996 * 120.53408 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2028 -3.6128 0.0005 11 6 1.7427 -4.9140 0.0011 12 7 0.4381 -5.1767 0.0011 13 6 -0.0064 -6.4182 0.0021 14 7 0.7975 -7.4622 0.0036 15 6 2.1185 -7.3033 0.0037 16 7 2.9637 -8.3858 -0.0003 17 1 2.5950 -9.2830 -0.0023 18 6 4.3290 -8.2102 0.0063 19 7 5.1195 -9.2574 0.0077 20 6 4.9059 -6.8668 0.0048 21 6 4.0870 -5.7879 0.0028 22 6 2.6416 -5.9980 0.0016 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 3.1565 -3.4355 0.0009 27 1 -1.0732 -6.5862 0.0025 28 1 6.0822 -9.1384 0.0078 29 1 5.9779 -6.7356 0.0055 30 1 4.4963 -4.7885 0.0020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336691938.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:44:00 Heat of formation + Delta-G solvation = 67.872306 kcal Electronic energy + Delta-G solvation = -16546.880487 eV Core-core repulsion = 13762.489007 eV Total energy + Delta-G solvation = -2784.391480 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.097 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.31291 -39.57333 -37.71073 -35.24088 -34.80036 -34.02903 -32.54046 -30.53367 -28.60910 -25.88587 -24.90071 -24.08542 -23.38227 -20.65504 -19.87638 -18.78050 -18.24961 -17.23065 -16.93247 -16.68250 -16.53974 -16.40054 -15.16874 -15.11991 -14.94063 -14.50388 -14.13781 -14.05694 -13.97834 -12.88759 -12.81067 -12.44808 -12.20450 -11.68730 -11.59896 -11.41901 -11.07054 -10.62577 -10.55629 -10.20587 -9.39529 -8.55594 -8.27754 -6.42716 -0.41262 0.19980 0.81904 1.44937 1.45461 1.50180 1.57990 2.09019 2.20528 2.44355 3.03661 3.08984 3.27692 3.36797 3.62677 3.64866 3.96567 4.09050 4.39423 4.81555 5.00443 5.10639 5.13363 5.28926 5.32900 5.52396 5.62439 5.77659 5.85911 6.11915 6.35541 6.62419 6.84393 7.23890 7.27840 7.41319 8.83692 Molecular weight = 245.10amu Principal moments of inertia in cm(-1) A = 0.035035 B = 0.005282 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.006381 B = 5299.920118 C = 6083.781746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.012 3.988 3 Si 0.976 3.024 4 H -0.256 1.256 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.560 4.560 8 H 0.079 0.921 9 C 0.276 3.724 10 N -0.670 5.670 11 C 0.473 3.527 12 N -0.626 5.626 13 C 0.385 3.615 14 N -0.613 5.613 15 C 0.449 3.551 16 N -0.593 5.593 17 H 0.426 0.574 18 C 0.433 3.567 19 N -0.785 5.785 20 C -0.213 4.213 21 C -0.011 4.011 22 C -0.310 4.310 23 H 0.268 0.732 24 H 0.001 0.999 25 H 0.001 0.999 26 H 0.415 0.585 27 H 0.231 0.769 28 H 0.362 0.638 29 H 0.177 0.823 30 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.836 -10.829 0.003 13.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.800 3.200 4 H -0.180 1.180 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.598 4.598 8 H 0.097 0.903 9 C 0.154 3.846 10 N -0.296 5.296 11 C 0.225 3.775 12 N -0.355 5.355 13 C 0.096 3.904 14 N -0.341 5.341 15 C 0.208 3.792 16 N -0.218 5.218 17 H 0.266 0.734 18 C 0.156 3.844 19 N -0.417 5.417 20 C -0.236 4.236 21 C -0.035 4.035 22 C -0.326 4.326 23 H 0.077 0.923 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.254 0.746 27 H 0.247 0.753 28 H 0.180 0.820 29 H 0.194 0.806 30 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.582 -11.638 0.001 13.371 hybrid contribution 1.448 1.532 0.007 2.109 sum 8.031 -10.106 0.008 12.908 Atomic orbital electron populations 1.70105 1.07909 1.28408 1.49754 1.25876 0.95695 1.03309 0.93958 0.85235 0.79119 0.78028 0.77606 1.18002 1.20609 1.20620 1.21631 0.94238 0.90867 1.53092 0.90275 1.18673 0.88043 0.82598 0.95321 1.45084 1.10655 1.01734 1.72152 1.18729 0.88660 0.85974 0.84166 1.68207 1.14512 1.25376 1.27432 1.25175 1.01108 0.80459 0.83678 1.68062 1.01429 1.36125 1.28504 1.18039 0.88431 0.85386 0.87317 1.41084 1.03060 1.08379 1.69306 0.73413 1.19867 0.83441 0.91130 0.89954 1.69401 1.11298 1.31343 1.29665 1.23098 1.01518 0.89493 1.09500 1.22093 0.89344 1.00612 0.91464 1.19179 0.95934 0.91790 1.25685 0.92258 0.98067 0.98063 0.74597 0.75302 0.81952 0.80567 0.82777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.36 13.29 21.45 0.28 -52.07 16 2 C 0.01 0.63 5.46 84.66 0.46 1.10 16 3 Si 0.98 40.40 29.54 68.60 2.03 42.42 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 5 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 6 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.56 -28.45 9.28 25.60 0.24 -28.21 16 8 H 0.08 3.67 7.60 -2.91 -0.02 3.65 16 9 C 0.28 13.64 5.48 85.63 0.47 14.11 16 10 N -0.67 -25.92 5.62 -347.64 -1.95 -27.87 16 11 C 0.47 17.31 7.53 133.61 1.01 18.32 16 12 N -0.63 -23.61 9.70 -196.92 -1.91 -25.52 16 13 C 0.39 11.67 12.24 180.87 2.21 13.89 16 14 N -0.61 -18.31 10.47 -197.64 -2.07 -20.38 16 15 C 0.45 13.41 7.70 133.79 1.03 14.44 16 16 N -0.59 -15.34 5.43 -186.20 -1.01 -16.35 16 17 H 0.43 10.07 8.92 -92.70 -0.83 9.24 16 18 C 0.43 10.60 7.92 135.72 1.07 11.68 16 19 N -0.79 -18.94 14.16 -52.00 -0.74 -19.67 16 20 C -0.21 -4.43 10.05 23.69 0.24 -4.19 16 21 C -0.01 -0.26 9.72 23.65 0.23 -0.03 16 22 C -0.31 -9.56 5.89 -20.04 -0.12 -9.67 16 23 H 0.27 14.27 8.31 -92.70 -0.77 13.50 16 24 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 25 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 26 H 0.42 13.59 6.53 -92.70 -0.61 12.98 16 27 H 0.23 5.01 8.06 -2.91 -0.02 4.99 16 28 H 0.36 7.14 8.75 -92.70 -0.81 6.33 16 29 H 0.18 2.44 8.06 -2.91 -0.02 2.42 16 30 H 0.15 3.00 6.64 -2.91 -0.02 2.98 16 Total: -1.00 -63.03 269.94 0.45 -62.58 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: -1.02 Total: 25.45 kcal Atomic # 6 Polarization: 24.58 SS G_CDS: 6.84 Total: 31.42 kcal Atomic # 7 Polarization: -154.48 SS G_CDS: -7.40 Total: -161.87 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.42 kcal Total: -63.03 0.45 -62.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336691938.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.448 kcal (2) G-P(sol) polarization free energy of solvation -63.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds