Wall clock time and date at job start Sun Mar 29 2020 22:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86795 * 119.99942 * 2 1 4 4 H 1.48502 * 109.47317 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47081 * 299.99822 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.00194 * 3 2 1 7 7 C 1.38955 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99776 * 179.97438 * 7 2 1 9 9 N 1.37090 * 119.99996 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99722 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00107 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99961 * 179.97438 * 10 9 7 13 13 C 1.50697 * 109.47266 * 180.02562 * 12 10 9 14 14 C 1.34229 * 126.56158 * 264.68527 * 13 12 10 15 15 N 1.36923 * 109.90912 * 179.89035 * 14 13 12 16 16 H 0.96999 * 124.99032 * 180.14072 * 15 14 13 17 17 C 1.37420 * 110.02334 * 0.38567 * 15 14 13 18 18 N 1.32661 * 133.19421 * 179.74639 * 17 15 14 19 19 C 1.31586 * 121.67216 * 180.02562 * 18 17 15 20 20 C 1.38669 * 121.58260 * 0.02562 * 19 18 17 21 21 C 1.38192 * 119.41103 * 359.97438 * 20 19 18 22 22 C 1.39691 * 118.03911 * 0.02562 * 21 20 19 23 23 H 0.97000 * 120.00310 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00208 * 0.26881 * 9 7 2 25 25 H 1.09004 * 109.46932 * 300.00223 * 12 10 9 26 26 H 1.08997 * 109.47392 * 59.99562 * 12 10 9 27 27 H 1.07997 * 125.04970 * 0.03121 * 14 13 12 28 28 H 1.07999 * 119.20993 * 180.02562 * 19 18 17 29 29 H 1.07999 * 120.29064 * 179.97438 * 20 19 18 30 30 H 1.08000 * 120.97990 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0001 12 6 1.2438 -4.8630 0.0011 13 6 2.2231 -6.0084 0.0016 14 6 2.6668 -6.6815 -1.0716 15 7 3.5487 -7.6532 -0.6807 16 1 4.0025 -8.2663 -1.2800 17 6 3.6925 -7.6360 0.6859 18 7 4.4104 -8.3623 1.5326 19 6 4.3757 -8.1460 2.8301 20 6 3.5857 -7.1472 3.3789 21 6 2.8152 -6.3573 2.5470 22 6 2.8675 -6.6045 1.1731 23 1 -0.4850 0.8400 -0.0004 24 1 0.3534 -2.3906 -0.0038 25 1 0.6175 -4.9205 0.8914 26 1 0.6168 -4.9209 -0.8885 27 1 2.3736 -6.4844 -2.0921 28 1 4.9769 -8.7611 3.4832 29 1 3.5728 -6.9881 4.4471 30 1 2.1911 -5.5720 2.9473 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339926509.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:19 Heat of formation + Delta-G solvation = 29.503399 kcal Electronic energy + Delta-G solvation = -16617.441890 eV Core-core repulsion = 13799.093858 eV Total energy + Delta-G solvation = -2818.348032 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.27734 -38.14596 -37.45372 -33.98406 -33.02453 -31.32252 -30.81101 -29.37561 -27.11400 -24.48721 -23.44794 -22.32075 -20.07996 -18.70919 -18.06131 -17.58458 -16.53115 -15.84489 -15.78669 -14.74815 -14.48127 -14.37116 -13.92840 -13.86822 -13.04069 -12.69305 -12.50971 -12.28956 -12.00182 -11.89829 -11.47521 -11.20060 -10.93503 -10.33042 -10.20543 -10.04809 -9.49160 -9.19736 -8.39345 -8.20485 -7.93526 -7.62569 -6.39292 -3.79830 1.25257 1.60986 2.90374 3.01990 3.17590 3.28079 3.35691 3.96045 4.12427 4.22122 4.70199 4.93368 4.99105 5.15025 5.26618 5.27611 5.39320 5.57377 5.72855 5.82162 5.95868 6.08446 6.30399 6.39388 6.52895 6.68839 6.83843 7.20804 7.51348 7.57737 8.09397 8.21407 8.64855 9.21188 9.58411 10.10677 10.78510 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.037281 B = 0.005175 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.874911 B = 5409.309778 C = 5681.199554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.927 3.073 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.102 0.898 9 N -0.566 5.566 10 C 0.443 3.557 11 O -0.586 6.586 12 C -0.064 4.064 13 C -0.116 4.116 14 C 0.058 3.942 15 N -0.583 5.583 16 H 0.416 0.584 17 C 0.283 3.717 18 N -0.506 5.506 19 C 0.129 3.871 20 C -0.210 4.210 21 C -0.020 4.020 22 C -0.131 4.131 23 H 0.270 0.730 24 H 0.392 0.608 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.175 0.825 28 H 0.156 0.844 29 H 0.133 0.867 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.110 -13.565 1.800 13.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.755 3.245 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.120 0.880 9 N -0.203 5.203 10 C 0.229 3.771 11 O -0.470 6.470 12 C -0.105 4.105 13 C -0.124 4.124 14 C -0.067 4.067 15 N -0.189 5.189 16 H 0.253 0.747 17 C 0.050 3.950 18 N -0.220 5.220 19 C -0.036 4.036 20 C -0.231 4.231 21 C -0.046 4.046 22 C -0.138 4.138 23 H 0.080 0.920 24 H 0.226 0.774 25 H 0.104 0.896 26 H 0.106 0.894 27 H 0.193 0.807 28 H 0.173 0.827 29 H 0.151 0.849 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.352 -14.106 1.288 14.358 hybrid contribution -0.460 1.354 0.025 1.430 sum 1.892 -12.752 1.313 12.958 Atomic orbital electron populations 1.69617 1.05893 1.27967 1.50930 1.25237 0.95609 0.99626 0.97471 0.85832 0.79716 0.81295 0.77695 1.19299 1.20783 1.20769 1.19749 0.93355 0.82339 1.47304 0.88012 1.41904 1.09179 1.04588 1.64600 1.19901 0.88344 0.84665 0.84195 1.90539 1.13945 1.87247 1.55294 1.19918 0.96190 0.90951 1.03412 1.19680 1.03010 0.98948 0.90726 1.21558 0.94341 0.91496 0.99265 1.41386 1.40764 1.32594 1.04206 0.74706 1.18347 0.96459 0.94985 0.85210 1.66419 1.22884 1.28899 1.03771 1.22313 0.96415 0.95782 0.89117 1.21771 1.01283 0.99311 1.00781 1.20995 0.95929 0.96513 0.91151 1.19713 1.01315 0.98729 0.94060 0.91980 0.77424 0.89618 0.89433 0.80749 0.82730 0.84898 0.84969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.47 13.05 55.50 0.72 -23.75 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.57 -14.25 5.29 -10.96 -0.06 -14.31 16 10 C 0.44 10.41 7.78 -10.98 -0.09 10.33 16 11 O -0.59 -16.13 15.61 5.55 0.09 -16.05 16 12 C -0.06 -1.11 6.23 -29.04 -0.18 -1.29 16 13 C -0.12 -2.01 4.81 -102.76 -0.49 -2.50 16 14 C 0.06 0.85 11.74 -16.69 -0.20 0.65 16 15 N -0.58 -8.21 6.05 -12.14 -0.07 -8.29 16 16 H 0.42 4.45 8.96 -40.82 -0.37 4.08 16 17 C 0.28 4.76 8.43 -155.69 -1.31 3.45 16 18 N -0.51 -8.10 10.39 -12.27 -0.13 -8.23 16 19 C 0.13 1.74 11.15 -17.50 -0.20 1.55 16 20 C -0.21 -2.81 10.10 -39.44 -0.40 -3.20 16 21 C -0.02 -0.31 10.22 -39.06 -0.40 -0.71 16 22 C -0.13 -2.32 6.37 -105.11 -0.67 -2.99 16 23 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 24 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 25 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.18 1.93 8.06 -52.49 -0.42 1.51 16 28 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 274.10 15.07 4.13 4.13 Total: -1.00 -34.21 274.10 -7.25 -41.46 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -2.74 Total: 11.64 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -4.17 Total: -2.68 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.47 Total: -54.57 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: 0.09 Total: -16.05 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -34.21 -7.25 -41.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339926509.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.960 kcal (2) G-P(sol) polarization free energy of solvation -34.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds