Wall clock time and date at job start Sun Mar 29 2020 23:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39679 * 120.99010 * 80.55542 * 3 2 1 5 5 C 1.38209 * 119.12890 * 179.97438 * 4 3 2 6 6 N 1.31922 * 121.20124 * 0.02719 * 5 4 3 7 7 C 1.31689 * 122.20161 * 359.97111 * 6 5 4 8 8 C 1.39392 * 120.70808 * 359.74252 * 7 6 5 9 9 C 1.47790 * 120.63302 * 180.26333 * 8 7 6 10 10 O 1.21555 * 120.00236 * 180.26595 * 9 8 7 11 11 N 1.34776 * 119.99540 * 0.27311 * 9 8 7 12 12 C 1.46505 * 119.99712 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.46998 * 179.97438 * 12 11 9 14 14 C 1.50704 * 109.47250 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99262 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00267 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00209 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00100 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47119 * 89.99600 * 18 16 14 20 20 H 1.48500 * 109.47393 * 209.99947 * 18 16 14 21 21 H 1.48505 * 109.47061 * 330.00207 * 18 16 14 22 22 H 1.08011 * 120.43327 * 359.95356 * 4 3 2 23 23 H 1.07999 * 119.39710 * 179.97438 * 5 4 3 24 24 H 1.08001 * 119.64104 * 180.02562 * 7 6 5 25 25 H 0.97002 * 120.00718 * 0.02562 * 11 9 8 26 26 H 1.08998 * 109.47054 * 300.00275 * 12 11 9 27 27 H 1.09002 * 109.46757 * 59.99828 * 12 11 9 28 28 H 1.08998 * 109.47458 * 300.00047 * 13 12 11 29 29 H 1.09002 * 109.47491 * 60.00297 * 13 12 11 30 30 H 0.97000 * 120.00342 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2873 -0.1955 -1.1812 5 6 4.6686 -0.1870 -1.1370 6 7 5.3149 0.0020 -0.0026 7 6 4.6873 0.1917 1.1395 8 6 3.2945 0.2054 1.1926 9 6 2.5919 0.4243 2.4742 10 8 1.3768 0.4292 2.5082 11 7 3.2984 0.6185 3.6054 12 6 2.6019 0.8360 4.8758 13 6 3.6286 1.0275 5.9939 14 6 2.9122 1.2506 7.3009 15 1 1.8326 1.2549 7.3309 16 6 3.6349 1.4492 8.4581 17 7 4.9495 1.4445 8.4213 18 14 2.7469 1.7265 10.0779 19 1 2.5121 0.4199 10.7436 20 1 3.5780 2.5877 10.9570 21 1 1.4445 2.3921 9.8209 22 1 2.7707 -0.3521 -2.1167 23 1 5.2291 -0.3387 -2.0476 24 1 5.2580 0.3428 2.0439 25 1 4.2681 0.6151 3.5783 26 1 1.9768 1.7256 4.7997 27 1 1.9775 -0.0288 5.1005 28 1 4.2534 0.1376 6.0698 29 1 4.2533 1.8921 5.7695 30 1 5.4581 1.5838 9.2355 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345366458.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:04 Heat of formation + Delta-G solvation = 24.119809 kcal Electronic energy + Delta-G solvation = -16104.142598 eV Core-core repulsion = 13285.561116 eV Total energy + Delta-G solvation = -2818.581482 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.96503 -38.94542 -36.69979 -35.06773 -33.08963 -33.01346 -31.97727 -29.59441 -25.89726 -24.71042 -24.21965 -21.31151 -20.68204 -19.64937 -17.71129 -16.93837 -16.39432 -15.56580 -15.40906 -15.15213 -14.89550 -14.49624 -14.39173 -13.50405 -13.33044 -13.15169 -13.10083 -13.04666 -12.36682 -12.32052 -11.27656 -11.08710 -10.70314 -10.43630 -10.38731 -10.15953 -9.84178 -9.65930 -9.58715 -9.30368 -8.70119 -8.44361 -6.13857 -4.17004 0.06764 0.45643 2.60751 2.70488 3.03050 3.23837 3.27324 3.33974 3.38859 3.51078 3.67999 3.91807 4.34089 4.37522 4.44779 4.63928 4.94318 5.15376 5.19640 5.23606 5.55991 6.00514 6.21072 6.23512 6.59737 6.68869 7.39615 7.40231 7.42761 7.53205 7.73128 7.83841 8.18831 8.34593 8.88535 9.48373 10.97656 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.037066 B = 0.004416 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.236620 B = 6339.319401 C = 7074.106451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C 0.249 3.751 3 C 0.078 3.922 4 C -0.136 4.136 5 C 0.123 3.877 6 N -0.469 5.469 7 C 0.141 3.859 8 C -0.141 4.141 9 C 0.545 3.455 10 O -0.531 6.531 11 N -0.707 5.707 12 C 0.121 3.879 13 C 0.012 3.988 14 C -0.523 4.523 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.893 5.893 18 Si 0.897 3.103 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.272 1.272 22 H 0.153 0.847 23 H 0.172 0.828 24 H 0.173 0.827 25 H 0.399 0.601 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.064 -3.186 -18.657 19.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.051 5.051 2 C -0.067 4.067 3 C 0.066 3.934 4 C -0.159 4.159 5 C -0.034 4.034 6 N -0.178 5.178 7 C -0.017 4.017 8 C -0.148 4.148 9 C 0.329 3.671 10 O -0.409 6.409 11 N -0.357 5.357 12 C -0.001 4.001 13 C -0.026 4.026 14 C -0.562 4.562 15 H 0.078 0.922 16 C -0.141 4.141 17 N -0.532 5.532 18 Si 0.724 3.276 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.197 1.197 22 H 0.170 0.830 23 H 0.189 0.811 24 H 0.190 0.810 25 H 0.234 0.766 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.499 -3.147 -18.462 18.788 hybrid contribution -0.337 0.165 1.032 1.098 sum 1.162 -2.981 -17.430 17.721 Atomic orbital electron populations 1.81149 1.11709 1.05098 1.07155 1.24940 0.92054 0.95695 0.94032 1.16170 0.85715 0.97941 0.93540 1.22260 0.95674 1.00203 0.97738 1.23007 0.90963 0.92727 0.96695 1.67666 1.41033 1.10440 0.98616 1.23120 0.89767 0.91900 0.96881 1.21344 0.95497 1.03761 0.94240 1.17967 0.87296 0.78417 0.83445 1.90831 1.13061 1.51071 1.85918 1.46269 1.10478 1.70583 1.08381 1.21854 0.96786 1.00662 0.80809 1.19345 0.93852 0.97851 0.91509 1.21021 0.93274 1.49886 0.92028 0.92230 1.24977 0.94860 0.95000 0.99313 1.69944 1.05185 1.49584 1.28477 0.86512 0.79663 0.78244 0.83149 1.20530 1.21120 1.19725 0.82978 0.81099 0.81021 0.76631 0.92087 0.92091 0.95747 0.95735 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -6.27 18.49 41.83 0.77 -5.50 16 2 C 0.25 3.55 12.93 -22.47 -0.29 3.26 16 3 C 0.08 0.87 5.79 -106.33 -0.62 0.26 16 4 C -0.14 -0.96 9.85 -39.05 -0.38 -1.34 16 5 C 0.12 0.81 11.16 -17.52 -0.20 0.61 16 6 N -0.47 -4.31 10.32 -12.98 -0.13 -4.44 16 7 C 0.14 1.39 10.71 -17.18 -0.18 1.20 16 8 C -0.14 -1.70 5.92 -104.46 -0.62 -2.32 16 9 C 0.54 8.78 7.76 -12.35 -0.10 8.68 16 10 O -0.53 -10.68 14.51 5.32 0.08 -10.60 16 11 N -0.71 -11.33 5.51 -61.27 -0.34 -11.67 16 12 C 0.12 2.43 5.61 -4.04 -0.02 2.41 16 13 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 14 C -0.52 -14.16 9.11 -34.44 -0.31 -14.47 16 15 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 18 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H 0.15 0.61 8.06 -52.48 -0.42 0.19 16 23 H 0.17 0.50 8.06 -52.49 -0.42 0.08 16 24 H 0.17 1.38 6.42 -52.49 -0.34 1.04 16 25 H 0.40 5.21 6.54 -40.82 -0.27 4.94 16 26 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 280.07 15.07 4.22 4.22 Total: -1.00 -33.36 280.07 -5.33 -38.69 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: -2.68 Total: -1.99 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -2.96 Total: -0.01 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 1.04 Total: -46.36 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.36 -5.33 -38.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345366458.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.805 kcal (2) G-P(sol) polarization free energy of solvation -33.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds