Wall clock time and date at job start Sun Mar 29 2020 22:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.64111 * 2 1 4 4 C 1.54333 * 110.84774 * 236.83362 * 2 1 3 5 5 N 1.47028 * 107.26096 * 219.66834 * 4 2 1 6 6 C 1.34777 * 125.64354 * 178.84617 * 5 4 2 7 7 O 1.21283 * 120.00463 * 359.72563 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.44686 * 6 5 4 9 9 S 1.80997 * 109.47151 * 180.27780 * 8 6 5 10 10 C 1.76196 * 100.00314 * 179.97438 * 9 8 6 11 11 H 1.08005 * 120.00018 * 0.02562 * 10 9 8 12 12 C 1.38799 * 120.00626 * 179.97438 * 10 9 8 13 13 N 1.31633 * 119.99674 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00584 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47012 * 89.99727 * 14 12 10 16 16 H 1.48501 * 109.47302 * 209.99797 * 14 12 10 17 17 H 1.48501 * 109.46788 * 330.00118 * 14 12 10 18 18 C 1.47419 * 108.70447 * 358.59140 * 5 4 2 19 19 C 1.54911 * 104.83630 * 24.34992 * 18 5 4 20 20 H 1.08997 * 111.00060 * 81.10347 * 19 18 5 21 21 O 1.42893 * 111.00625 * 204.92115 * 19 18 5 22 22 H 1.09004 * 109.47140 * 296.86039 * 1 2 3 23 23 H 1.08998 * 109.46950 * 56.85774 * 1 2 3 24 24 H 1.08995 * 109.47291 * 176.86245 * 1 2 3 25 25 H 1.09007 * 109.99123 * 100.20184 * 4 2 1 26 26 H 1.08992 * 109.78067 * 339.02532 * 4 2 1 27 27 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 28 28 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 29 29 H 0.97003 * 120.00297 * 179.97438 * 13 12 10 30 30 H 1.08998 * 110.36747 * 143.19119 * 18 5 4 31 31 H 1.08998 * 110.36429 * 265.40111 * 18 5 4 32 32 H 0.96705 * 113.99638 * 298.54461 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0793 -0.7890 -1.2073 5 7 3.2445 -1.5519 -0.7363 6 6 3.9923 -2.3861 -1.4856 7 8 3.7193 -2.5609 -2.6544 8 6 5.1714 -3.0969 -0.8729 9 16 5.9708 -4.1300 -2.1257 10 6 7.2755 -4.8220 -1.1648 11 1 7.3778 -4.5570 -0.1228 12 6 8.1712 -5.7084 -1.7465 13 7 8.0457 -6.0326 -3.0161 14 14 9.5540 -6.4426 -0.7276 15 1 9.0909 -7.7078 -0.1033 16 1 10.7205 -6.7208 -1.6035 17 1 9.9499 -5.4826 0.3341 18 6 3.4632 -1.2486 0.6897 19 6 2.0789 -0.7933 1.2152 20 1 1.4454 -1.6510 1.4410 21 8 2.2179 0.0525 2.3585 22 1 -0.3634 0.4643 0.9168 23 1 -0.3633 0.5618 -0.8605 24 1 -0.3633 -1.0261 -0.0562 25 1 2.3814 -0.1003 -1.9964 26 1 1.3156 -1.4714 -1.5803 27 1 5.8845 -2.3620 -0.4990 28 1 4.8300 -3.7236 -0.0491 29 1 8.6718 -6.6518 -3.4229 30 1 3.7960 -2.1405 1.2206 31 1 4.1946 -0.4478 0.7993 32 1 2.6475 -0.3735 3.1130 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352766599.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:39 Heat of formation + Delta-G solvation = -88.426058 kcal Electronic energy + Delta-G solvation = -15496.305965 eV Core-core repulsion = 12775.995328 eV Total energy + Delta-G solvation = -2720.310637 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.06036 -37.97963 -35.63433 -32.95485 -32.44512 -29.48136 -28.75516 -26.13951 -25.41978 -23.08324 -20.60582 -19.45428 -17.89858 -17.60829 -16.65462 -15.87580 -15.28100 -14.82051 -14.72630 -14.35001 -13.92502 -13.50233 -13.35543 -13.24682 -12.62261 -12.37392 -12.35194 -12.01422 -11.63298 -11.31421 -11.07696 -11.04044 -10.78302 -10.69057 -10.44895 -9.83362 -9.43832 -9.08245 -8.56202 -8.25698 -6.52502 -6.23202 -3.94290 2.82619 3.01827 3.21134 3.23628 3.28923 3.53179 3.89058 4.16502 4.20843 4.33217 4.67812 4.96897 5.01690 5.07106 5.11949 5.18432 5.41749 5.46008 5.56021 5.62815 5.63865 5.77654 5.83945 5.87487 6.03908 6.09616 6.35438 7.28411 7.57398 7.60315 8.33378 8.50901 9.21930 10.84274 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.043452 B = 0.004844 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.231794 B = 5779.234717 C = 6342.768822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 H 0.093 0.907 4 C 0.113 3.887 5 N -0.624 5.624 6 C 0.548 3.452 7 O -0.513 6.513 8 C -0.147 4.147 9 S -0.060 6.060 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.070 3.930 19 C 0.094 3.906 20 H 0.077 0.923 21 O -0.556 6.556 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.269 0.731 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.042 10.906 10.609 19.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 H 0.111 0.889 4 C -0.010 4.010 5 N -0.363 5.363 6 C 0.337 3.663 7 O -0.386 6.386 8 C -0.297 4.297 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.202 1.202 16 H -0.207 1.207 17 H -0.197 1.197 18 C -0.054 4.054 19 C 0.034 3.966 20 H 0.094 0.906 21 O -0.361 6.361 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -12.618 10.907 8.256 18.610 hybrid contribution 1.577 -0.685 2.404 2.956 sum -11.041 10.221 10.660 18.440 Atomic orbital electron populations 1.21751 0.93303 1.02336 1.02445 1.22228 0.96737 1.00146 0.92379 0.88868 1.21990 0.88162 0.94615 0.96218 1.48348 1.31160 1.45996 1.10787 1.20061 0.82703 0.77695 0.85863 1.90715 1.69785 1.62221 1.15919 1.23514 0.97706 1.02911 1.05610 1.85413 1.33175 1.52564 1.12178 1.22854 1.15090 1.31718 0.98753 0.90940 1.24992 0.97655 0.95637 0.95246 1.70019 1.36557 1.32725 1.10953 0.86160 0.80455 0.79283 0.79561 1.20250 1.20714 1.19685 1.23000 0.98237 1.01611 0.82587 1.23053 0.94700 0.92787 0.86090 0.90557 1.86507 1.83183 1.42021 1.24399 0.91760 0.91967 0.92262 0.91090 0.91042 0.89267 0.89335 0.92147 0.90083 0.90539 0.77027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.16 37.16 0.34 -0.77 16 2 C -0.10 -0.92 3.27 -88.78 -0.29 -1.21 16 3 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 4 C 0.11 1.40 6.48 -3.06 -0.02 1.38 16 5 N -0.62 -9.27 3.33 -170.51 -0.57 -9.83 16 6 C 0.55 10.80 7.87 -10.98 -0.09 10.71 16 7 O -0.51 -12.10 16.19 5.55 0.09 -12.01 16 8 C -0.15 -3.04 5.16 36.01 0.19 -2.85 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 10 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 11 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 12 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 13 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16 14 Si 0.92 21.33 29.55 -169.99 -5.02 16.30 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 C 0.07 0.77 6.42 -2.53 -0.02 0.75 16 19 C 0.09 0.86 3.88 -24.58 -0.10 0.76 16 20 H 0.08 0.66 8.05 -51.93 -0.42 0.24 16 21 O -0.56 -4.70 13.47 -35.23 -0.47 -5.18 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.46 8.07 -51.93 -0.42 0.04 16 25 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 26 H 0.07 0.90 7.77 -51.93 -0.40 0.49 16 27 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 28 H 0.09 1.68 7.85 -51.92 -0.41 1.27 16 29 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.08 0.83 7.49 -51.93 -0.39 0.44 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.38 1.67 9.11 45.56 0.42 2.09 16 LS Contribution 288.20 15.07 4.34 4.34 Total: -1.00 -34.87 288.20 -6.60 -41.46 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -3.70 Total: -1.60 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 0.22 Total: -4.19 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.17 Total: -35.28 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.38 Total: -17.19 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -34.87 -6.60 -41.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352766599.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.964 kcal (2) G-P(sol) polarization free energy of solvation -34.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds