Wall clock time and date at job start Sun Mar 29 2020 22:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.91372 * 2 1 4 4 C 1.54905 * 111.00352 * 236.09203 * 2 1 3 5 5 N 1.47426 * 104.83216 * 204.91528 * 4 2 1 6 6 C 1.34779 * 125.65040 * 204.09128 * 5 4 2 7 7 O 1.21281 * 119.99517 * 0.02562 * 6 5 4 8 8 C 1.50693 * 120.00222 * 179.97438 * 6 5 4 9 9 S 1.81002 * 109.47406 * 180.02562 * 8 6 5 10 10 C 1.76199 * 100.00182 * 180.02562 * 9 8 6 11 11 H 1.07999 * 119.99976 * 0.02562 * 10 9 8 12 12 C 1.38803 * 119.99949 * 179.97438 * 10 9 8 13 13 N 1.31625 * 119.99820 * 0.27912 * 12 10 9 14 14 Si 1.86800 * 119.99759 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47364 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46883 * 120.00278 * 14 12 10 17 17 H 1.48497 * 109.46870 * 240.00088 * 14 12 10 18 18 C 1.47025 * 108.70282 * 24.36043 * 5 4 2 19 19 C 1.54335 * 107.26572 * 358.58148 * 18 5 4 20 20 H 1.08996 * 111.00374 * 219.60656 * 19 18 5 21 21 O 1.42900 * 110.51375 * 96.45098 * 19 18 5 22 22 H 1.08999 * 109.47074 * 182.45453 * 1 2 3 23 23 H 1.09005 * 109.47338 * 302.45090 * 1 2 3 24 24 H 1.08999 * 109.47311 * 62.45126 * 1 2 3 25 25 H 1.09000 * 110.36546 * 86.07639 * 4 2 1 26 26 H 1.08999 * 110.46027 * 323.80341 * 4 2 1 27 27 H 1.09005 * 109.46836 * 60.00415 * 8 6 5 28 28 H 1.08996 * 109.47837 * 300.00838 * 8 6 5 29 29 H 0.97001 * 120.00425 * 359.71679 * 13 12 10 30 30 H 1.08995 * 109.88369 * 118.12710 * 18 5 4 31 31 H 1.09002 * 109.87699 * 239.29615 * 18 5 4 32 32 H 0.96698 * 113.99696 * 66.50474 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8067 -1.2002 5 7 3.4271 -1.2431 -0.7732 6 6 4.4477 -1.5618 -1.5938 7 8 4.3008 -1.5002 -2.7961 8 6 5.7715 -1.9934 -1.0175 9 16 6.9283 -2.3492 -2.3634 10 6 8.3483 -2.8167 -1.4309 11 1 8.3093 -2.8175 -0.3516 12 6 9.5167 -3.1850 -2.0834 13 7 9.5656 -3.1797 -3.3987 14 14 11.0223 -3.6799 -1.0946 15 1 10.7118 -3.5969 0.3552 16 1 11.4050 -5.0728 -1.4395 17 1 12.1469 -2.7642 -1.4137 18 6 3.4658 -1.2794 0.6961 19 6 2.0862 -0.8078 1.2024 20 1 2.1892 -0.1705 2.0805 21 8 1.2479 -1.9291 1.4891 22 1 -0.3633 -1.0267 0.0440 23 1 -0.3634 0.5514 0.8672 24 1 -0.3634 0.4753 -0.9111 25 1 2.1559 -0.1722 -2.0836 26 1 1.4524 -1.6705 -1.4041 27 1 5.6298 -2.8896 -0.4134 28 1 6.1742 -1.1951 -0.3943 29 1 8.7839 -2.9224 -3.9121 30 1 3.6601 -2.2963 1.0368 31 1 4.2424 -0.6084 1.0631 32 1 1.5518 -2.4672 2.2329 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352766601.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:45 Heat of formation + Delta-G solvation = -92.666223 kcal Electronic energy + Delta-G solvation = -15596.208060 eV Core-core repulsion = 12875.713555 eV Total energy + Delta-G solvation = -2720.494504 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.13380 -38.06192 -35.37628 -32.91183 -32.53676 -29.56639 -28.99678 -26.11040 -24.80373 -23.15323 -20.48515 -19.52385 -18.36174 -17.74323 -16.74328 -15.74358 -15.34126 -14.83313 -14.62010 -14.35483 -13.87948 -13.74909 -13.38892 -12.74676 -12.60474 -12.42013 -12.39265 -11.97553 -11.86987 -11.54955 -11.25462 -10.90886 -10.75985 -10.47851 -10.21738 -9.59399 -9.49247 -9.02008 -8.57484 -8.22738 -6.68355 -6.63242 -4.01231 2.79383 2.96024 3.32261 3.39709 3.44105 3.53922 3.78776 4.19196 4.25334 4.26956 4.60151 4.90719 5.01716 5.15132 5.19638 5.21516 5.34435 5.39123 5.42790 5.56351 5.66989 5.77117 5.81564 5.86879 5.99102 6.13635 6.34332 7.30269 7.58141 7.91749 8.45407 8.49316 9.26293 10.80869 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.048442 B = 0.004811 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.867399 B = 5818.349116 C = 6259.756541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.098 4.098 3 H 0.094 0.906 4 C 0.114 3.886 5 N -0.623 5.623 6 C 0.546 3.454 7 O -0.516 6.516 8 C -0.124 4.124 9 S -0.117 6.117 10 C -0.607 4.607 11 H 0.066 0.934 12 C 0.035 3.965 13 N -0.885 5.885 14 Si 1.091 2.909 15 H -0.288 1.288 16 H -0.283 1.283 17 H -0.282 1.282 18 C 0.071 3.929 19 C 0.095 3.905 20 H 0.079 0.921 21 O -0.554 6.554 22 H 0.069 0.931 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.279 0.721 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.878 5.594 12.745 21.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.117 4.117 3 H 0.113 0.887 4 C -0.009 4.009 5 N -0.360 5.360 6 C 0.335 3.665 7 O -0.390 6.390 8 C -0.275 4.275 9 S 0.109 5.891 10 C -0.755 4.755 11 H 0.084 0.916 12 C -0.175 4.175 13 N -0.519 5.519 14 Si 0.917 3.083 15 H -0.214 1.214 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.053 4.053 19 C 0.036 3.964 20 H 0.096 0.904 21 O -0.360 6.360 22 H 0.088 0.912 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -14.791 5.403 10.230 18.778 hybrid contribution -0.912 0.169 2.296 2.476 sum -15.703 5.572 12.526 20.845 Atomic orbital electron populations 1.21514 0.92958 1.03102 1.01536 1.22464 0.97387 0.98550 0.93346 0.88741 1.22237 0.83122 0.98316 0.97219 1.48393 1.12339 1.69049 1.06230 1.19996 0.84099 0.76303 0.86136 1.90709 1.82378 1.51637 1.14285 1.23283 0.95479 1.03989 1.04710 1.84836 1.07421 1.88012 1.08785 1.23755 0.99088 1.56898 0.95806 0.91564 1.26064 1.00718 0.93855 0.96876 1.70731 1.33284 1.42254 1.05636 0.83242 0.74104 0.77017 0.73948 1.21425 1.20863 1.20854 1.22796 0.98547 1.02191 0.81722 1.22798 0.88273 0.87925 0.97433 0.90351 1.86513 1.52251 1.41432 1.55832 0.91176 0.92405 0.92478 0.90392 0.91218 0.89135 0.89110 0.90897 0.90768 0.90608 0.77204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 9.02 37.16 0.34 -0.76 16 2 C -0.10 -0.92 3.57 -88.47 -0.32 -1.24 16 3 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 4 C 0.11 1.48 6.36 -2.53 -0.02 1.46 16 5 N -0.62 -9.45 3.33 -170.52 -0.57 -10.02 16 6 C 0.55 10.96 7.87 -10.99 -0.09 10.88 16 7 O -0.52 -12.36 16.12 5.56 0.09 -12.27 16 8 C -0.12 -2.61 5.35 36.00 0.19 -2.42 16 9 S -0.12 -3.22 19.60 -107.50 -2.11 -5.33 16 10 C -0.61 -17.69 9.50 30.94 0.29 -17.39 16 11 H 0.07 1.85 7.80 -52.49 -0.41 1.44 16 12 C 0.04 1.04 5.49 -17.43 -0.10 0.94 16 13 N -0.88 -27.74 13.67 55.49 0.76 -26.98 16 14 Si 1.09 25.12 29.92 -169.99 -5.09 20.04 16 15 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 C 0.07 0.78 6.25 -3.06 -0.02 0.76 16 19 C 0.10 0.80 4.09 -24.89 -0.10 0.70 16 20 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 21 O -0.55 -4.70 11.97 -35.23 -0.42 -5.12 16 22 H 0.07 0.65 7.25 -51.93 -0.38 0.28 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 26 H 0.07 0.94 8.04 -51.93 -0.42 0.52 16 27 H 0.09 1.79 8.14 -51.91 -0.42 1.37 16 28 H 0.09 1.78 8.14 -51.92 -0.42 1.35 16 29 H 0.28 8.94 7.13 -40.82 -0.29 8.65 16 30 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.38 1.72 9.12 45.56 0.42 2.13 16 LS Contribution 285.85 15.07 4.31 4.31 Total: -1.00 -36.09 285.85 -6.51 -42.60 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -3.67 Total: -0.16 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 0.19 Total: -7.06 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.19 Total: -37.00 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.33 Total: -17.39 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.09 Total: 20.04 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -2.11 Total: -5.33 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -36.09 -6.51 -42.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352766601.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.071 kcal (2) G-P(sol) polarization free energy of solvation -36.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds