Wall clock time and date at job start Sun Mar 29 2020 22:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.91372 * 2 1 4 4 C 1.54905 * 111.00352 * 236.09203 * 2 1 3 5 5 N 1.47426 * 104.83216 * 204.91528 * 4 2 1 6 6 C 1.34779 * 125.65040 * 204.09128 * 5 4 2 7 7 O 1.21281 * 119.99517 * 0.02562 * 6 5 4 8 8 C 1.50693 * 120.00222 * 179.97438 * 6 5 4 9 9 S 1.81002 * 109.47406 * 180.02562 * 8 6 5 10 10 C 1.76199 * 100.00182 * 180.02562 * 9 8 6 11 11 H 1.07999 * 119.99976 * 0.02562 * 10 9 8 12 12 C 1.38803 * 119.99949 * 179.97438 * 10 9 8 13 13 N 1.31625 * 119.99820 * 0.27912 * 12 10 9 14 14 Si 1.86800 * 119.99759 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47364 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46883 * 120.00278 * 14 12 10 17 17 H 1.48497 * 109.46870 * 240.00088 * 14 12 10 18 18 C 1.47025 * 108.70282 * 24.36043 * 5 4 2 19 19 C 1.54335 * 107.26572 * 358.58148 * 18 5 4 20 20 H 1.08996 * 111.00374 * 219.60656 * 19 18 5 21 21 O 1.42900 * 110.51375 * 96.45098 * 19 18 5 22 22 H 1.08999 * 109.47074 * 182.45453 * 1 2 3 23 23 H 1.09005 * 109.47338 * 302.45090 * 1 2 3 24 24 H 1.08999 * 109.47311 * 62.45126 * 1 2 3 25 25 H 1.09000 * 110.36546 * 86.07639 * 4 2 1 26 26 H 1.08999 * 110.46027 * 323.80341 * 4 2 1 27 27 H 1.09005 * 109.46836 * 60.00415 * 8 6 5 28 28 H 1.08996 * 109.47837 * 300.00838 * 8 6 5 29 29 H 0.97001 * 120.00425 * 359.71679 * 13 12 10 30 30 H 1.08995 * 109.88369 * 118.12710 * 18 5 4 31 31 H 1.09002 * 109.87699 * 239.29615 * 18 5 4 32 32 H 0.96698 * 113.99696 * 66.50474 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8067 -1.2002 5 7 3.4271 -1.2431 -0.7732 6 6 4.4477 -1.5618 -1.5938 7 8 4.3008 -1.5002 -2.7961 8 6 5.7715 -1.9934 -1.0175 9 16 6.9283 -2.3492 -2.3634 10 6 8.3483 -2.8167 -1.4309 11 1 8.3093 -2.8175 -0.3516 12 6 9.5167 -3.1850 -2.0834 13 7 9.5656 -3.1797 -3.3987 14 14 11.0223 -3.6799 -1.0946 15 1 10.7118 -3.5969 0.3552 16 1 11.4050 -5.0728 -1.4395 17 1 12.1469 -2.7642 -1.4137 18 6 3.4658 -1.2794 0.6961 19 6 2.0862 -0.8078 1.2024 20 1 2.1892 -0.1705 2.0805 21 8 1.2479 -1.9291 1.4891 22 1 -0.3633 -1.0267 0.0440 23 1 -0.3634 0.5514 0.8672 24 1 -0.3634 0.4753 -0.9111 25 1 2.1559 -0.1722 -2.0836 26 1 1.4524 -1.6705 -1.4041 27 1 5.6298 -2.8896 -0.4134 28 1 6.1742 -1.1951 -0.3943 29 1 8.7839 -2.9224 -3.9121 30 1 3.6601 -2.2963 1.0368 31 1 4.2424 -0.6084 1.0631 32 1 1.5518 -2.4672 2.2329 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352766601.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:45 Heat of formation + Delta-G solvation = -120.536161 kcal Electronic energy + Delta-G solvation = -15597.416591 eV Core-core repulsion = 12875.713555 eV Total energy + Delta-G solvation = -2721.703035 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.29645 -39.28213 -36.28654 -34.77007 -33.91966 -31.09419 -29.89119 -27.37864 -26.80820 -24.11537 -21.27442 -20.98014 -20.21672 -18.68137 -18.14443 -17.03338 -16.95249 -16.06807 -15.72345 -15.62679 -15.50926 -14.92135 -14.67195 -14.40714 -14.03156 -13.80345 -13.52293 -13.31116 -13.16389 -12.76860 -12.42823 -11.99665 -11.92933 -11.59738 -11.47198 -11.31474 -11.13314 -10.90745 -10.35711 -9.83037 -8.95022 -8.91784 -6.31154 1.10302 1.39961 1.50713 1.61804 1.77866 1.94832 2.31747 3.00783 3.03473 3.17360 3.38350 3.50653 3.75985 3.87754 4.05564 4.19761 4.25498 4.43886 4.48855 4.56939 4.61415 4.75972 4.82993 5.06422 5.13762 5.19529 5.49285 5.62205 6.12250 6.25146 6.89522 6.95261 7.04306 8.48537 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.048442 B = 0.004811 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.867399 B = 5818.349116 C = 6259.756541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.092 4.092 3 H 0.109 0.891 4 C 0.106 3.894 5 N -0.614 5.614 6 C 0.542 3.458 7 O -0.569 6.569 8 C -0.098 4.098 9 S -0.198 6.198 10 C -0.613 4.613 11 H 0.076 0.924 12 C -0.018 4.018 13 N -0.913 5.913 14 Si 1.143 2.857 15 H -0.262 1.262 16 H -0.274 1.274 17 H -0.274 1.274 18 C 0.058 3.942 19 C 0.107 3.893 20 H 0.116 0.884 21 O -0.569 6.569 22 H 0.057 0.943 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.260 0.740 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.401 6.104 16.125 23.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.111 4.111 3 H 0.127 0.873 4 C -0.016 4.016 5 N -0.348 5.348 6 C 0.330 3.670 7 O -0.448 6.448 8 C -0.249 4.249 9 S 0.029 5.971 10 C -0.760 4.760 11 H 0.094 0.906 12 C -0.221 4.221 13 N -0.549 5.549 14 Si 0.961 3.039 15 H -0.186 1.186 16 H -0.200 1.200 17 H -0.199 1.199 18 C -0.064 4.064 19 C 0.048 3.952 20 H 0.134 0.866 21 O -0.378 6.378 22 H 0.076 0.924 23 H 0.095 0.905 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.125 0.875 28 H 0.129 0.871 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -15.374 5.921 13.679 21.413 hybrid contribution -0.918 0.032 1.310 1.600 sum -16.292 5.953 14.989 22.924 Atomic orbital electron populations 1.21476 0.91908 1.02629 1.02564 1.22501 0.98089 0.98717 0.91788 0.87337 1.22437 0.81962 0.98420 0.98805 1.48387 1.11757 1.66601 1.08092 1.19798 0.84778 0.76593 0.85831 1.90685 1.83286 1.54377 1.16475 1.23133 0.94404 1.05362 1.01989 1.85107 1.09890 1.88481 1.13619 1.24070 0.99410 1.56299 0.96244 0.90594 1.27885 1.04332 0.92951 0.96973 1.70857 1.32640 1.44428 1.06928 0.82636 0.70386 0.77100 0.73780 1.18573 1.19978 1.19925 1.23253 1.01125 1.03425 0.78628 1.22810 0.86244 0.88144 0.98024 0.86632 1.86489 1.52385 1.41881 1.57040 0.92439 0.90546 0.92236 0.91955 0.91994 0.87469 0.87118 0.92855 0.89956 0.88961 0.75123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 9.02 71.98 0.65 -1.11 16 2 C -0.09 -1.46 3.57 -9.40 -0.03 -1.50 16 3 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 4 C 0.11 2.68 6.36 86.85 0.55 3.23 16 5 N -0.61 -17.87 3.33 -811.78 -2.70 -20.57 16 6 C 0.54 21.80 7.87 87.65 0.69 22.49 16 7 O -0.57 -28.31 16.12 -3.03 -0.05 -28.36 16 8 C -0.10 -4.06 5.35 71.23 0.38 -3.67 16 9 S -0.20 -11.18 19.60 -56.49 -1.11 -12.29 16 10 C -0.61 -35.66 9.50 67.96 0.65 -35.02 16 11 H 0.08 4.14 7.80 -2.91 -0.02 4.11 16 12 C -0.02 -1.07 5.49 84.86 0.47 -0.60 16 13 N -0.91 -58.48 13.67 21.65 0.30 -58.19 16 14 Si 1.14 49.38 29.92 68.60 2.05 51.44 16 15 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 16 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 17 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 18 C 0.06 1.07 6.25 86.73 0.54 1.62 16 19 C 0.11 1.38 4.09 31.79 0.13 1.51 16 20 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 21 O -0.57 -7.68 11.97 -148.98 -1.78 -9.47 16 22 H 0.06 0.95 7.25 -2.39 -0.02 0.93 16 23 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 1.76 8.04 -2.39 -0.02 1.74 16 26 H 0.06 1.66 8.04 -2.39 -0.02 1.64 16 27 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 28 H 0.11 4.14 8.14 -2.40 -0.02 4.12 16 29 H 0.26 17.42 7.13 -92.71 -0.66 16.76 16 30 H 0.08 1.43 8.07 -2.39 -0.02 1.41 16 31 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.40 2.12 9.12 -74.06 -0.68 1.44 16 Total: -1.00 -81.10 285.85 1.28 -79.82 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.55 Total: 10.67 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 4.02 Total: -13.06 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -2.40 Total: -78.76 kcal Atomic # 8 Polarization: -35.99 SS G_CDS: -1.83 Total: -37.82 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 2.05 Total: 51.44 kcal Atomic # 16 Polarization: -11.18 SS G_CDS: -1.11 Total: -12.29 kcal Total: -81.10 1.28 -79.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352766601.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.714 kcal (2) G-P(sol) polarization free energy of solvation -81.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds