Wall clock time and date at job start Sun Mar 29 2020 23:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38583 * 119.54493 * 2 1 4 4 C 1.38633 * 119.36713 * 180.02562 * 3 2 1 5 5 C 1.38583 * 118.49235 * 0.28021 * 4 3 2 6 6 C 1.39373 * 119.06069 * 359.43957 * 5 4 3 7 7 C 1.48002 * 119.73173 * 180.27425 * 6 5 4 8 8 O 1.21562 * 120.00305 * 354.03508 * 7 6 5 9 9 N 1.34774 * 119.99663 * 174.04401 * 7 6 5 10 10 C 1.36782 * 120.00314 * 4.85114 * 9 7 6 11 11 H 1.08000 * 120.00390 * 312.16556 * 10 9 7 12 12 C 1.39106 * 120.00331 * 132.16452 * 10 9 7 13 13 N 1.31323 * 120.00049 * 3.11648 * 12 10 9 14 14 Si 1.86805 * 120.00267 * 183.11487 * 12 10 9 15 15 H 1.48492 * 109.47094 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46950 * 119.99915 * 14 12 10 17 17 H 1.48495 * 109.47206 * 239.99925 * 14 12 10 18 18 C 1.46498 * 120.00029 * 184.85392 * 9 7 6 19 19 C 1.47208 * 109.47124 * 84.40967 * 18 9 7 20 20 N 6.85322 * 118.90955 * 153.07448 * 2 1 3 21 21 N 1.31502 * 119.54030 * 179.97438 * 2 1 3 22 22 H 1.08992 * 109.47469 * 89.99176 * 1 2 3 23 23 H 1.09003 * 109.47240 * 209.99773 * 1 2 3 24 24 H 1.08998 * 109.46696 * 329.99164 * 1 2 3 25 25 H 1.07999 * 120.31966 * 359.97438 * 3 2 1 26 26 H 1.07997 * 120.74985 * 180.02562 * 4 3 2 27 27 H 1.08001 * 120.46957 * 179.71536 * 5 4 3 28 28 H 0.96996 * 120.00631 * 179.97438 * 13 12 10 29 29 H 1.08997 * 109.47624 * 204.40537 * 18 9 7 30 30 H 1.09003 * 109.47255 * 324.41134 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1904 1.2056 0.0000 4 6 3.5767 1.2013 -0.0005 5 6 4.2340 -0.0187 -0.0070 6 6 3.4827 -1.1925 -0.0008 7 6 4.1694 -2.5036 -0.0015 8 8 5.3784 -2.5565 -0.1167 9 7 3.4543 -3.6389 0.1256 10 6 2.0878 -3.5867 0.1553 11 1 1.5883 -2.8755 0.7964 12 6 1.3413 -4.4498 -0.6402 13 7 1.9465 -5.3556 -1.3736 14 14 -0.5221 -4.3204 -0.6655 15 1 -0.9546 -3.2267 0.2410 16 1 -0.9792 -4.0270 -2.0476 17 1 -1.1137 -5.6042 -0.2105 18 6 4.1405 -4.9288 0.2319 19 6 4.5246 -5.1662 1.6330 20 7 4.8201 -5.3489 2.7166 21 7 2.1554 -1.1441 0.0005 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5140 25 1 1.6482 2.1396 -0.0004 26 1 4.1318 2.1277 -0.0001 27 1 5.3133 -0.0593 -0.0123 28 1 1.4260 -5.9577 -1.9280 29 1 3.4736 -5.7238 -0.1016 30 1 5.0337 -4.9178 -0.3928 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355731009.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:51 Heat of formation + Delta-G solvation = 46.257805 kcal Electronic energy + Delta-G solvation = -17296.599487 eV Core-core repulsion = 14478.977980 eV Total energy + Delta-G solvation = -2817.621507 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.00328 -38.27362 -35.76601 -34.72974 -32.51644 -32.03234 -31.52999 -27.86450 -27.15621 -25.07514 -23.34840 -21.68925 -19.73991 -18.20474 -17.02535 -16.01668 -15.71488 -15.33907 -14.77309 -14.58110 -14.23391 -13.83126 -13.37930 -13.07225 -12.85202 -12.67296 -12.18905 -12.01019 -11.84494 -11.75140 -11.53061 -11.22480 -11.21093 -10.88812 -10.44936 -10.29148 -9.40950 -9.29492 -9.18488 -8.48979 -8.39042 -7.61600 -6.43069 -4.17123 1.24997 1.72263 3.12826 3.21335 3.25720 3.35836 3.59093 3.65099 4.12365 4.47065 4.53512 4.77667 4.90864 5.03685 5.30240 5.35281 5.52472 5.57950 5.84454 5.90287 6.00015 6.03278 6.34310 6.38084 6.51004 6.61414 6.91089 7.09253 7.57012 7.70642 8.35668 8.41700 8.53945 9.00039 9.21023 9.65302 10.61309 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.016363 B = 0.012095 C = 0.007768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.716786 B = 2314.497875 C = 3603.749540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.108 3.892 3 C -0.172 4.172 4 C -0.090 4.090 5 C -0.136 4.136 6 C 0.117 3.883 7 C 0.522 3.478 8 O -0.589 6.589 9 N -0.414 5.414 10 C -0.298 4.298 11 H 0.118 0.882 12 C 0.042 3.958 13 N -0.881 5.881 14 Si 0.925 3.075 15 H -0.262 1.262 16 H -0.280 1.280 17 H -0.284 1.284 18 C 0.189 3.811 19 C 0.218 3.782 20 N -0.476 5.476 21 N -0.406 5.406 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.067 0.933 25 H 0.127 0.873 26 H 0.131 0.869 27 H 0.139 0.861 28 H 0.273 0.727 29 H 0.160 0.840 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.787 9.202 -1.069 10.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.032 4.032 3 C -0.192 4.192 4 C -0.115 4.115 5 C -0.157 4.157 6 C -0.022 4.022 7 C 0.311 3.689 8 O -0.474 6.474 9 N -0.132 5.132 10 C -0.427 4.427 11 H 0.135 0.865 12 C -0.162 4.162 13 N -0.520 5.520 14 Si 0.752 3.248 15 H -0.186 1.186 16 H -0.206 1.206 17 H -0.210 1.210 18 C 0.063 3.937 19 C -0.100 4.100 20 N -0.156 5.156 21 N -0.117 5.117 22 H 0.093 0.907 23 H 0.098 0.902 24 H 0.086 0.914 25 H 0.145 0.855 26 H 0.149 0.851 27 H 0.157 0.843 28 H 0.083 0.917 29 H 0.177 0.823 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.266 7.915 0.346 8.570 hybrid contribution -0.586 0.923 -0.610 1.252 sum -3.852 8.838 -0.263 9.645 Atomic orbital electron populations 1.20707 0.89336 1.03134 1.02846 1.21613 0.97249 0.88686 0.95612 1.22035 0.94953 0.99043 1.03189 1.21414 0.94348 0.97810 0.97959 1.22072 1.01828 0.92099 0.99697 1.21235 0.89546 0.94038 0.97376 1.18179 0.86075 0.83941 0.80735 1.90655 1.13964 1.86995 1.55754 1.43226 1.06871 1.02504 1.60580 1.20120 0.78876 1.20257 1.23432 0.86514 1.25569 1.00733 0.95582 0.94359 1.69503 1.36546 1.18963 1.26953 0.85885 0.82316 0.78261 0.78342 1.18637 1.20629 1.21003 1.19413 1.00013 0.92068 0.82185 1.30690 0.91233 0.91954 0.96138 1.81052 1.11494 1.10200 1.12820 1.68667 1.08442 1.26381 1.08240 0.90734 0.90154 0.91402 0.85529 0.85140 0.84282 0.91672 0.82319 0.87990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.40 10.17 36.01 0.37 -1.03 16 2 C 0.11 1.81 6.78 -82.60 -0.56 1.25 16 3 C -0.17 -2.40 9.75 -39.31 -0.38 -2.79 16 4 C -0.09 -1.28 10.17 -39.31 -0.40 -1.68 16 5 C -0.14 -2.43 9.63 -39.03 -0.38 -2.80 16 6 C 0.12 2.50 6.66 -83.02 -0.55 1.95 16 7 C 0.52 12.61 7.55 -12.26 -0.09 12.51 16 8 O -0.59 -14.92 15.98 5.31 0.08 -14.83 16 9 N -0.41 -10.06 2.47 -118.96 -0.29 -10.35 16 10 C -0.30 -7.24 7.47 -15.02 -0.11 -7.35 16 11 H 0.12 2.85 5.97 -52.49 -0.31 2.54 16 12 C 0.04 0.99 5.35 -17.45 -0.09 0.90 16 13 N -0.88 -21.51 10.98 55.50 0.61 -20.91 16 14 Si 0.93 18.97 29.56 -169.99 -5.02 13.94 16 15 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 16 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 17 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 18 C 0.19 4.24 5.36 -6.83 -0.04 4.20 16 19 C 0.22 4.93 15.72 -20.69 -0.33 4.61 16 20 N -0.48 -11.19 18.55 42.23 0.78 -10.41 16 21 N -0.41 -8.37 6.28 -6.07 -0.04 -8.41 16 22 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 24 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 25 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 26 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 27 H 0.14 2.39 7.65 -52.49 -0.40 1.99 16 28 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 29 H 0.16 3.62 5.51 -51.93 -0.29 3.34 16 30 H 0.10 2.19 7.53 -51.93 -0.39 1.80 16 LS Contribution 275.18 15.07 4.15 4.15 Total: -1.00 -28.61 275.18 -4.93 -33.54 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -2.64 Total: 3.51 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: -2.57 Total: 9.76 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 1.06 Total: -50.07 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.08 Total: -14.83 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.61 -4.93 -33.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355731009.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.800 kcal (2) G-P(sol) polarization free energy of solvation -28.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds