Wall clock time and date at job start Sun Mar 29 2020 23:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38583 * 119.54493 * 2 1 4 4 C 1.38633 * 119.36713 * 180.02562 * 3 2 1 5 5 C 1.38583 * 118.49235 * 0.28021 * 4 3 2 6 6 C 1.39373 * 119.06069 * 359.43957 * 5 4 3 7 7 C 1.48002 * 119.73173 * 180.27425 * 6 5 4 8 8 O 1.21562 * 120.00305 * 354.03508 * 7 6 5 9 9 N 1.34774 * 119.99663 * 174.04401 * 7 6 5 10 10 C 1.36782 * 120.00314 * 4.85114 * 9 7 6 11 11 H 1.08000 * 120.00390 * 312.16556 * 10 9 7 12 12 C 1.39106 * 120.00331 * 132.16452 * 10 9 7 13 13 N 1.31323 * 120.00049 * 3.11648 * 12 10 9 14 14 Si 1.86805 * 120.00267 * 183.11487 * 12 10 9 15 15 H 1.48492 * 109.47094 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46950 * 119.99915 * 14 12 10 17 17 H 1.48495 * 109.47206 * 239.99925 * 14 12 10 18 18 C 1.46498 * 120.00029 * 184.85392 * 9 7 6 19 19 C 1.47208 * 109.47124 * 84.40967 * 18 9 7 20 20 N 6.85322 * 118.90955 * 153.07448 * 2 1 3 21 21 N 1.31502 * 119.54030 * 179.97438 * 2 1 3 22 22 H 1.08992 * 109.47469 * 89.99176 * 1 2 3 23 23 H 1.09003 * 109.47240 * 209.99773 * 1 2 3 24 24 H 1.08998 * 109.46696 * 329.99164 * 1 2 3 25 25 H 1.07999 * 120.31966 * 359.97438 * 3 2 1 26 26 H 1.07997 * 120.74985 * 180.02562 * 4 3 2 27 27 H 1.08001 * 120.46957 * 179.71536 * 5 4 3 28 28 H 0.96996 * 120.00631 * 179.97438 * 13 12 10 29 29 H 1.08997 * 109.47624 * 204.40537 * 18 9 7 30 30 H 1.09003 * 109.47255 * 324.41134 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1904 1.2056 0.0000 4 6 3.5767 1.2013 -0.0005 5 6 4.2340 -0.0187 -0.0070 6 6 3.4827 -1.1925 -0.0008 7 6 4.1694 -2.5036 -0.0015 8 8 5.3784 -2.5565 -0.1167 9 7 3.4543 -3.6389 0.1256 10 6 2.0878 -3.5867 0.1553 11 1 1.5883 -2.8755 0.7964 12 6 1.3413 -4.4498 -0.6402 13 7 1.9465 -5.3556 -1.3736 14 14 -0.5221 -4.3204 -0.6655 15 1 -0.9546 -3.2267 0.2410 16 1 -0.9792 -4.0270 -2.0476 17 1 -1.1137 -5.6042 -0.2105 18 6 4.1405 -4.9288 0.2319 19 6 4.5246 -5.1662 1.6330 20 7 4.8201 -5.3489 2.7166 21 7 2.1554 -1.1441 0.0005 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5140 25 1 1.6482 2.1396 -0.0004 26 1 4.1318 2.1277 -0.0001 27 1 5.3133 -0.0593 -0.0123 28 1 1.4260 -5.9577 -1.9280 29 1 3.4736 -5.7238 -0.1016 30 1 5.0337 -4.9178 -0.3928 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355731009.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:50 Heat of formation + Delta-G solvation = 29.674589 kcal Electronic energy + Delta-G solvation = -17297.318589 eV Core-core repulsion = 14478.977980 eV Total energy + Delta-G solvation = -2818.340609 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.47184 -39.92379 -37.62666 -36.57377 -33.76649 -33.57109 -33.14766 -29.57924 -28.41868 -26.83139 -24.83368 -22.94668 -21.43222 -19.93659 -18.73415 -17.60023 -17.05882 -16.98985 -16.36872 -16.21905 -15.79983 -15.37895 -14.86347 -14.71723 -14.48934 -13.99036 -13.83285 -13.67478 -13.21395 -13.05086 -12.95692 -12.86856 -12.82215 -12.53003 -12.24105 -11.88076 -11.06338 -10.92987 -10.67271 -10.01585 -9.79128 -9.36784 -8.23241 -6.03211 -0.11512 0.49119 1.48090 1.50782 1.56252 1.67604 1.78395 1.97266 2.41545 2.86507 3.00938 3.06201 3.46710 3.53916 3.96139 4.13831 4.24853 4.29017 4.55577 4.73014 4.78285 4.86568 4.90413 5.07843 5.27061 5.28900 5.35197 5.70822 5.87878 5.91702 6.51784 6.59253 7.05322 7.23920 7.43531 7.83121 8.81641 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.016363 B = 0.012095 C = 0.007768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.716786 B = 2314.497875 C = 3603.749540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.089 3.911 3 C -0.147 4.147 4 C -0.078 4.078 5 C -0.143 4.143 6 C 0.074 3.926 7 C 0.510 3.490 8 O -0.615 6.615 9 N -0.428 5.428 10 C -0.306 4.306 11 H 0.113 0.887 12 C 0.004 3.996 13 N -0.906 5.906 14 Si 0.979 3.021 15 H -0.250 1.250 16 H -0.281 1.281 17 H -0.284 1.284 18 C 0.194 3.806 19 C 0.228 3.772 20 N -0.490 5.490 21 N -0.440 5.440 22 H 0.083 0.917 23 H 0.059 0.941 24 H 0.106 0.894 25 H 0.177 0.823 26 H 0.177 0.823 27 H 0.136 0.864 28 H 0.274 0.726 29 H 0.157 0.843 30 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.325 12.055 -1.080 13.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.051 4.051 3 C -0.167 4.167 4 C -0.103 4.103 5 C -0.164 4.164 6 C -0.063 4.063 7 C 0.301 3.699 8 O -0.501 6.501 9 N -0.146 5.146 10 C -0.434 4.434 11 H 0.130 0.870 12 C -0.197 4.197 13 N -0.545 5.545 14 Si 0.803 3.197 15 H -0.173 1.173 16 H -0.207 1.207 17 H -0.210 1.210 18 C 0.068 3.932 19 C -0.090 4.090 20 N -0.170 5.170 21 N -0.152 5.152 22 H 0.102 0.898 23 H 0.078 0.922 24 H 0.125 0.875 25 H 0.194 0.806 26 H 0.194 0.806 27 H 0.154 0.846 28 H 0.085 0.915 29 H 0.174 0.826 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.803 10.768 0.344 11.796 hybrid contribution -0.094 0.193 -0.611 0.648 sum -4.897 10.961 -0.267 12.009 Atomic orbital electron populations 1.20809 0.87233 1.04063 1.03716 1.22239 0.98762 0.88748 0.95388 1.22556 0.94939 0.99865 0.99318 1.21916 0.94875 0.97854 0.95657 1.22199 1.01780 0.92645 0.99813 1.20971 0.90510 0.93472 1.01353 1.18826 0.86088 0.85254 0.79770 1.90600 1.14963 1.87736 1.56818 1.43426 1.07175 1.02930 1.61020 1.20178 0.78967 1.20399 1.23882 0.86951 1.26237 1.04259 0.95197 0.93971 1.69576 1.37772 1.19547 1.27631 0.85073 0.77899 0.78423 0.78314 1.17318 1.20694 1.21034 1.19375 0.99991 0.91842 0.81972 1.30741 0.90746 0.91422 0.96067 1.81038 1.12059 1.10789 1.13129 1.68429 1.08243 1.29116 1.09439 0.89801 0.92200 0.87506 0.80583 0.80580 0.84589 0.91538 0.82617 0.87579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.41 10.17 71.24 0.72 -1.68 16 2 C 0.09 2.73 6.78 42.69 0.29 3.02 16 3 C -0.15 -3.39 9.75 22.45 0.22 -3.17 16 4 C -0.08 -1.90 10.17 22.45 0.23 -1.67 16 5 C -0.14 -4.95 9.63 22.63 0.22 -4.73 16 6 C 0.07 3.20 6.66 41.86 0.28 3.48 16 7 C 0.51 25.47 7.55 86.83 0.66 26.13 16 8 O -0.61 -32.25 15.98 -3.91 -0.06 -32.31 16 9 N -0.43 -21.44 2.47 -648.56 -1.60 -23.04 16 10 C -0.31 -15.17 7.47 84.13 0.63 -14.54 16 11 H 0.11 5.61 5.97 -2.91 -0.02 5.59 16 12 C 0.00 0.21 5.35 84.98 0.45 0.67 16 13 N -0.91 -45.06 10.98 21.69 0.24 -44.82 16 14 Si 0.98 38.73 29.56 68.60 2.03 40.76 16 15 H -0.25 -9.26 7.11 99.48 0.71 -8.56 16 16 H -0.28 -11.07 7.11 99.48 0.71 -10.37 16 17 H -0.28 -11.18 7.11 99.48 0.71 -10.48 16 18 C 0.19 9.00 5.36 84.58 0.45 9.46 16 19 C 0.23 10.58 15.72 89.42 1.41 11.99 16 20 N -0.49 -23.38 18.55 20.03 0.37 -23.01 16 21 N -0.44 -17.96 6.28 -173.12 -1.09 -19.05 16 22 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.11 1.67 8.08 -2.39 -0.02 1.65 16 25 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 26 H 0.18 2.70 8.06 -2.91 -0.02 2.68 16 27 H 0.14 4.66 7.65 -2.91 -0.02 4.63 16 28 H 0.27 12.90 8.31 -92.71 -0.77 12.13 16 29 H 0.16 7.37 5.51 -2.39 -0.01 7.36 16 30 H 0.11 4.76 7.53 -2.39 -0.02 4.74 16 Total: -1.00 -63.94 275.18 6.61 -57.33 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 1.17 Total: 15.20 kcal Atomic # 6 Polarization: 23.39 SS G_CDS: 5.55 Total: 28.94 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -2.08 Total: -109.92 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.06 Total: -32.31 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Total: -63.94 6.61 -57.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355731009.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.004 kcal (2) G-P(sol) polarization free energy of solvation -63.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds