Wall clock time and date at job start Sun Mar 29 2020 22:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46404 * 2 1 4 4 C 1.53237 * 109.47288 * 240.00847 * 2 1 3 5 5 H 1.08997 * 109.58230 * 302.13103 * 4 2 1 6 6 C 1.53005 * 109.58314 * 62.53915 * 4 2 1 7 7 S 1.81738 * 108.80039 * 182.33631 * 4 2 1 8 8 O 1.42099 * 109.47057 * 170.58397 * 7 4 2 9 9 C 1.81737 * 102.30502 * 54.53999 * 7 4 2 10 10 C 1.53237 * 108.80203 * 305.45891 * 9 7 4 11 11 N 1.46378 * 109.46840 * 119.98849 * 2 1 3 12 12 C 1.34778 * 119.64497 * 5.12180 * 11 2 1 13 13 O 1.21684 * 120.00187 * 5.97135 * 12 11 2 14 14 C 1.46375 * 119.99667 * 185.97137 * 12 11 2 15 15 H 1.08003 * 120.00324 * 5.18865 * 14 12 11 16 16 C 1.40051 * 119.99969 * 185.19564 * 14 12 11 17 17 N 1.30672 * 119.99532 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00196 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46806 * 59.99995 * 18 16 14 20 20 H 1.48502 * 109.47150 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47117 * 300.00010 * 18 16 14 22 22 H 1.08995 * 109.47305 * 294.42174 * 1 2 3 23 23 H 1.09001 * 109.46270 * 174.42254 * 1 2 3 24 24 H 1.08999 * 109.46942 * 54.42751 * 1 2 3 25 25 H 1.09001 * 109.46288 * 60.00411 * 6 4 2 26 26 H 1.08993 * 109.46792 * 179.97438 * 6 4 2 27 27 H 1.08999 * 109.47255 * 300.00655 * 6 4 2 28 28 H 1.09000 * 109.58369 * 185.66006 * 9 7 4 29 29 H 1.09006 * 109.69146 * 65.32545 * 9 7 4 30 30 H 1.08996 * 109.46930 * 297.65029 * 10 9 7 31 31 H 1.08996 * 109.46373 * 177.65234 * 10 9 7 32 32 H 0.97002 * 119.99580 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0409 -0.7222 -1.2513 5 1 1.6477 -1.7386 -1.2726 6 6 1.5851 0.0332 -2.5014 7 16 3.8568 -0.7725 -1.1982 8 8 4.3375 -1.6223 -2.2306 9 6 4.1758 -1.5415 0.4173 10 6 3.4490 -0.7364 1.4997 11 7 2.0179 -0.6898 1.1953 12 6 1.1401 -1.2889 2.0242 13 8 -0.0374 -1.3491 1.7231 14 6 1.6032 -1.8671 3.2867 15 1 2.6310 -1.7408 3.5937 16 6 0.7136 -2.5841 4.0966 17 7 -0.5300 -2.7365 3.7253 18 14 1.3047 -3.3226 5.7073 19 1 1.8047 -2.2410 6.5936 20 1 0.1784 -4.0259 6.3723 21 1 2.4007 -4.2872 5.4369 22 1 -0.3634 0.4249 0.9357 23 1 -0.3632 -1.0229 -0.0999 24 1 -0.3633 0.5978 -0.8359 25 1 1.9853 1.0469 -2.4793 26 1 1.9498 -0.4817 -3.3901 27 1 0.4961 0.0729 -2.5250 28 1 5.2472 -1.5392 0.6178 29 1 3.8069 -2.5672 0.4151 30 1 3.8477 0.2776 1.5275 31 1 3.5989 -1.2125 2.4687 32 1 -1.1462 -3.2328 4.2864 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356817666.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:32 Heat of formation + Delta-G solvation = -53.172452 kcal Electronic energy + Delta-G solvation = -16753.655892 eV Core-core repulsion = 14034.873966 eV Total energy + Delta-G solvation = -2718.781926 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.77448 -35.45370 -35.05473 -33.69225 -32.60318 -29.74289 -28.46150 -26.05372 -24.36613 -22.58431 -21.02243 -19.17597 -17.25185 -16.42879 -15.76471 -15.33643 -15.16913 -14.58232 -14.23282 -14.15462 -13.80005 -12.78915 -12.59442 -12.36685 -12.15109 -11.86321 -11.61572 -11.47465 -11.25366 -11.20264 -10.98008 -10.94597 -10.72331 -10.44276 -10.31522 -10.16510 -9.26814 -8.92930 -7.93984 -7.40508 -7.19792 -6.21720 -4.74692 1.88103 2.84271 3.08986 3.14969 3.15815 3.97952 4.06284 4.32099 4.45850 5.07109 5.29585 5.37303 5.42954 5.55000 5.70728 5.77977 5.80578 5.95914 6.14111 6.22889 6.31550 6.34048 6.43875 6.55245 7.01700 7.36149 7.37391 7.55410 8.04447 8.19477 8.93136 9.27477 10.47056 10.65409 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.033242 B = 0.008105 C = 0.006918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.095073 B = 3453.792598 C = 4046.395360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.179 3.821 3 H 0.066 0.934 4 C -0.410 4.410 5 H 0.091 0.909 6 C -0.123 4.123 7 S 1.216 4.784 8 O -0.870 6.870 9 C -0.449 4.449 10 C 0.142 3.858 11 N -0.648 5.648 12 C 0.555 3.445 13 O -0.561 6.561 14 C -0.547 4.547 15 H 0.073 0.927 16 C 0.088 3.912 17 N -0.766 5.766 18 Si 0.905 3.095 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.269 1.269 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.017 0.983 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.488 7.802 -4.413 11.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.073 3.927 3 H 0.084 0.916 4 C -0.530 4.530 5 H 0.109 0.891 6 C -0.182 4.182 7 S 1.417 4.583 8 O -0.865 6.865 9 C -0.589 4.589 10 C 0.016 3.984 11 N -0.386 5.386 12 C 0.362 3.638 13 O -0.444 6.444 14 C -0.583 4.583 15 H 0.091 0.909 16 C -0.132 4.132 17 N -0.394 5.394 18 Si 0.730 3.270 19 H -0.191 1.191 20 H -0.205 1.205 21 H -0.194 1.194 22 H 0.088 0.912 23 H 0.097 0.903 24 H 0.036 0.964 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.130 0.870 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.124 0.876 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.318 7.976 -5.241 12.027 hybrid contribution -0.433 -2.711 0.948 2.905 sum 6.885 5.265 -4.293 9.673 Atomic orbital electron populations 1.22177 0.92322 1.03367 0.99696 1.20467 0.96706 0.93385 0.82100 0.91623 1.27824 1.17989 1.05616 1.01616 0.89053 1.21422 1.02748 0.99436 0.94553 1.69891 0.88299 1.15984 0.84098 1.93042 1.73130 1.71602 1.48716 1.27968 1.06221 1.09361 1.15360 1.21011 0.81262 0.98188 0.97937 1.48250 1.05935 1.59513 1.24939 1.18215 0.84657 0.77312 0.83649 1.90644 1.17271 1.60929 1.75516 1.21021 0.97351 1.36018 1.03937 0.90861 1.25715 0.94292 0.94631 0.98559 1.69984 1.03631 1.30449 1.35376 0.86464 0.78951 0.79621 0.81961 1.19120 1.20536 1.19359 0.91173 0.90285 0.96410 0.91659 0.92807 0.91059 0.87016 0.89287 0.91940 0.87568 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 7.12 37.16 0.26 -2.10 16 2 C 0.18 3.15 2.82 -67.87 -0.19 2.96 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.41 -6.67 2.80 -26.61 -0.07 -6.74 16 5 H 0.09 1.81 8.14 -51.93 -0.42 1.38 16 6 C -0.12 -1.63 8.93 37.16 0.33 -1.30 16 7 S 1.22 17.50 13.08 -107.50 -1.41 16.09 16 8 O -0.87 -17.48 18.14 -35.23 -0.64 -18.12 16 9 C -0.45 -6.84 6.65 37.28 0.25 -6.59 16 10 C 0.14 2.31 6.14 -3.98 -0.02 2.28 16 11 N -0.65 -13.30 2.79 -167.66 -0.47 -13.77 16 12 C 0.56 14.61 7.40 -12.99 -0.10 14.51 16 13 O -0.56 -16.48 10.33 5.20 0.05 -16.43 16 14 C -0.55 -14.45 8.81 -35.63 -0.31 -14.76 16 15 H 0.07 1.74 5.62 -52.48 -0.30 1.45 16 16 C 0.09 2.35 5.50 -17.37 -0.10 2.26 16 17 N -0.77 -22.02 11.84 55.55 0.66 -21.37 16 18 Si 0.91 19.43 29.56 -169.99 -5.02 14.40 16 19 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 H 0.07 1.59 6.81 -51.93 -0.35 1.24 16 23 H 0.08 1.87 6.52 -51.93 -0.34 1.54 16 24 H 0.02 0.29 6.80 -51.93 -0.35 -0.06 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.95 6.64 -51.93 -0.34 0.60 16 28 H 0.11 1.37 8.14 -51.93 -0.42 0.94 16 29 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.11 1.87 5.15 -51.93 -0.27 1.60 16 32 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 LS Contribution 266.05 15.07 4.01 4.01 Total: -1.00 -35.71 266.05 -6.81 -42.53 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -4.05 Total: 2.13 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 0.05 Total: -9.48 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.19 Total: -35.14 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -0.59 Total: -34.54 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.40 kcal Atomic # 16 Polarization: 17.50 SS G_CDS: -1.41 Total: 16.09 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -35.71 -6.81 -42.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356817666.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.645 kcal (2) G-P(sol) polarization free energy of solvation -35.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds