Wall clock time and date at job start Sun Mar 29 2020 22:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47110 * 2 1 4 4 C 1.53232 * 109.47224 * 240.00901 * 2 1 3 5 5 H 1.09004 * 109.58306 * 57.44825 * 4 2 1 6 6 C 1.53003 * 109.58815 * 177.85737 * 4 2 1 7 7 S 1.81742 * 108.79902 * 297.65673 * 4 2 1 8 8 O 1.42094 * 109.47366 * 189.42290 * 7 4 2 9 9 C 1.81743 * 102.30362 * 305.45516 * 7 4 2 10 10 C 1.53246 * 108.79852 * 54.54181 * 9 7 4 11 11 N 1.46376 * 109.46707 * 119.99073 * 2 1 3 12 12 C 1.34772 * 119.65064 * 234.94076 * 11 2 1 13 13 O 1.21685 * 120.00161 * 354.78114 * 12 11 2 14 14 C 1.46377 * 120.00310 * 174.78320 * 12 11 2 15 15 H 1.08000 * 120.00077 * 5.29597 * 14 12 11 16 16 C 1.40053 * 120.00197 * 185.28919 * 14 12 11 17 17 N 1.30672 * 119.99665 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 119.99873 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46972 * 90.00411 * 18 16 14 20 20 H 1.48496 * 109.47207 * 210.00090 * 18 16 14 21 21 H 1.48500 * 109.47255 * 330.00477 * 18 16 14 22 22 H 1.08998 * 109.47550 * 300.01128 * 1 2 3 23 23 H 1.08992 * 109.47270 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46808 * 60.00573 * 1 2 3 25 25 H 1.08998 * 109.46666 * 59.99906 * 6 4 2 26 26 H 1.08997 * 109.47188 * 179.97438 * 6 4 2 27 27 H 1.08997 * 109.46992 * 300.00428 * 6 4 2 28 28 H 1.09004 * 109.58552 * 294.74612 * 9 7 4 29 29 H 1.08997 * 109.58543 * 174.33219 * 9 7 4 30 30 H 1.08991 * 109.46937 * 182.34214 * 10 9 7 31 31 H 1.08996 * 109.46678 * 62.34211 * 10 9 7 32 32 H 0.97001 * 119.99462 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0407 -0.7221 -1.2512 5 1 1.6416 -0.2367 -2.1418 6 6 3.5698 -0.6772 -1.2812 7 16 1.4831 -2.4511 -1.1983 8 8 2.1243 -3.1875 -2.2306 9 6 2.1018 -3.0083 0.4172 10 6 1.5848 -2.0547 1.4997 11 7 2.0178 -0.6898 1.1953 12 6 2.8743 -0.0616 2.0248 13 8 3.3122 1.0350 1.7307 14 6 3.2779 -0.6983 3.2795 15 1 2.9582 -1.7059 3.5011 16 6 4.0789 -0.0011 4.1926 17 7 4.4655 1.2180 3.9247 18 14 4.5933 -0.8135 5.7941 19 1 5.8781 -1.5311 5.5947 20 1 4.7634 0.2238 6.8430 21 1 3.5476 -1.7791 6.2176 22 1 -0.3634 0.5140 0.8898 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 -0.8901 25 1 3.9651 -1.1688 -0.3923 26 1 3.9311 -1.1917 -2.1715 27 1 3.9025 0.3606 -1.3006 28 1 3.1918 -3.0003 0.4135 29 1 1.7425 -4.0176 0.6177 30 1 1.9836 -2.3547 2.4686 31 1 0.4959 -2.0927 1.5273 32 1 5.0199 1.7010 4.5573 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356817669.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:36 Heat of formation + Delta-G solvation = -69.736014 kcal Electronic energy + Delta-G solvation = -16871.361525 eV Core-core repulsion = 14151.861349 eV Total energy + Delta-G solvation = -2719.500176 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.68364 -35.53403 -35.18815 -32.95900 -32.52310 -30.25012 -28.85593 -26.30632 -23.54676 -22.91265 -21.11920 -19.14064 -17.14339 -16.54126 -15.97356 -15.14730 -14.87074 -14.79056 -14.21130 -14.06421 -13.51189 -13.10141 -12.66677 -12.21466 -12.18467 -12.05714 -11.83517 -11.48748 -11.45721 -11.14472 -11.03731 -10.97221 -10.69048 -10.40625 -10.32695 -10.14696 -9.32508 -8.93556 -7.89589 -7.64803 -7.44509 -6.28106 -4.74011 1.93271 2.82197 3.08188 3.15738 3.17973 3.99283 4.07100 4.34565 4.47768 5.08725 5.20818 5.38441 5.44865 5.59226 5.73309 5.75981 5.78851 5.94494 6.01565 6.20079 6.26907 6.35867 6.38347 6.52582 6.63630 6.69006 7.38102 7.53204 8.03730 8.20961 8.93915 9.28968 10.47945 10.66339 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.034252 B = 0.008001 C = 0.007488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.284732 B = 3498.528339 C = 3738.641132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.167 3.833 3 H 0.102 0.898 4 C -0.404 4.404 5 H 0.113 0.887 6 C -0.134 4.134 7 S 1.218 4.782 8 O -0.870 6.870 9 C -0.449 4.449 10 C 0.140 3.860 11 N -0.642 5.642 12 C 0.559 3.441 13 O -0.572 6.572 14 C -0.546 4.546 15 H 0.075 0.925 16 C 0.088 3.912 17 N -0.766 5.766 18 Si 0.905 3.095 19 H -0.273 1.273 20 H -0.279 1.279 21 H -0.264 1.264 22 H 0.066 0.934 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.063 0.937 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.695 -5.485 -4.286 11.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.061 3.939 3 H 0.120 0.880 4 C -0.524 4.524 5 H 0.131 0.869 6 C -0.192 4.192 7 S 1.418 4.582 8 O -0.865 6.865 9 C -0.589 4.589 10 C 0.014 3.986 11 N -0.379 5.379 12 C 0.365 3.635 13 O -0.454 6.454 14 C -0.583 4.583 15 H 0.093 0.907 16 C -0.132 4.132 17 N -0.394 5.394 18 Si 0.730 3.270 19 H -0.198 1.198 20 H -0.204 1.204 21 H -0.188 1.188 22 H 0.085 0.915 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.109 0.891 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.081 0.919 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.838 -5.222 -5.095 12.248 hybrid contribution 2.613 -0.333 0.893 2.782 sum -7.225 -5.555 -4.202 10.036 Atomic orbital electron populations 1.22228 0.95746 1.01924 1.02532 1.20315 0.92617 0.98355 0.82627 0.88003 1.27723 1.03134 1.17111 1.04394 0.86901 1.21621 0.92764 1.03427 1.01345 1.69984 1.18097 0.85843 0.84297 1.93030 1.78916 1.65737 1.48866 1.27966 1.09102 1.06495 1.15303 1.21010 0.98182 0.81576 0.97835 1.48191 1.50632 1.14171 1.24954 1.18252 0.77061 0.84889 0.83291 1.90599 1.57015 1.22129 1.75660 1.21013 1.33619 1.01521 1.02115 0.90722 1.25727 0.94190 0.94309 0.99005 1.70005 1.25940 1.09583 1.33909 0.86405 0.79552 0.79573 0.81479 1.19818 1.20402 1.18772 0.91493 0.92262 0.91905 0.91917 0.93396 0.91741 0.89117 0.87095 0.87643 0.91894 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 8.78 37.15 0.33 -1.73 16 2 C 0.17 2.89 2.55 -67.88 -0.17 2.72 16 3 H 0.10 2.10 6.91 -51.93 -0.36 1.74 16 4 C -0.40 -6.44 2.93 -26.61 -0.08 -6.52 16 5 H 0.11 1.53 8.14 -51.93 -0.42 1.10 16 6 C -0.13 -2.57 8.89 37.16 0.33 -2.24 16 7 S 1.22 17.34 11.82 -107.50 -1.27 16.07 16 8 O -0.87 -17.28 17.93 -35.23 -0.63 -17.91 16 9 C -0.45 -6.74 6.25 37.28 0.23 -6.51 16 10 C 0.14 2.26 5.72 -3.98 -0.02 2.23 16 11 N -0.64 -12.97 1.92 -167.66 -0.32 -13.29 16 12 C 0.56 14.80 7.49 -12.99 -0.10 14.70 16 13 O -0.57 -17.47 14.36 5.20 0.07 -17.40 16 14 C -0.55 -14.48 8.84 -35.63 -0.32 -14.79 16 15 H 0.07 1.78 5.56 -52.49 -0.29 1.49 16 16 C 0.09 2.35 5.50 -17.36 -0.10 2.26 16 17 N -0.77 -22.21 11.84 55.55 0.66 -21.55 16 18 Si 0.91 19.46 29.56 -169.99 -5.02 14.43 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 22 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.06 0.56 5.84 -51.93 -0.30 0.26 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.06 1.35 6.45 -51.93 -0.33 1.02 16 26 H 0.05 0.89 8.06 -51.93 -0.42 0.47 16 27 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.09 1.63 7.33 -51.93 -0.38 1.25 16 29 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.11 1.85 5.13 -51.93 -0.27 1.59 16 31 H 0.06 0.78 6.92 -51.93 -0.36 0.42 16 32 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 LS Contribution 266.89 15.07 4.02 4.02 Total: -1.00 -36.53 266.89 -6.35 -42.88 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -3.96 Total: 2.64 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 0.11 Total: -9.89 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.34 Total: -34.84 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.56 Total: -35.31 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.43 kcal Atomic # 16 Polarization: 17.34 SS G_CDS: -1.27 Total: 16.07 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -36.53 -6.35 -42.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356817669.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.854 kcal (2) G-P(sol) polarization free energy of solvation -36.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds