Wall clock time and date at job start Sun Mar 29 2020 22:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47110 * 2 1 4 4 C 1.53232 * 109.47224 * 240.00901 * 2 1 3 5 5 H 1.09004 * 109.58306 * 57.44825 * 4 2 1 6 6 C 1.53003 * 109.58815 * 177.85737 * 4 2 1 7 7 S 1.81742 * 108.79902 * 297.65673 * 4 2 1 8 8 O 1.42094 * 109.47366 * 189.42290 * 7 4 2 9 9 C 1.81743 * 102.30362 * 305.45516 * 7 4 2 10 10 C 1.53246 * 108.79852 * 54.54181 * 9 7 4 11 11 N 1.46376 * 109.46707 * 119.99073 * 2 1 3 12 12 C 1.34772 * 119.65064 * 234.94076 * 11 2 1 13 13 O 1.21685 * 120.00161 * 354.78114 * 12 11 2 14 14 C 1.46377 * 120.00310 * 174.78320 * 12 11 2 15 15 H 1.08000 * 120.00077 * 5.29597 * 14 12 11 16 16 C 1.40053 * 120.00197 * 185.28919 * 14 12 11 17 17 N 1.30672 * 119.99665 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 119.99873 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46972 * 90.00411 * 18 16 14 20 20 H 1.48496 * 109.47207 * 210.00090 * 18 16 14 21 21 H 1.48500 * 109.47255 * 330.00477 * 18 16 14 22 22 H 1.08998 * 109.47550 * 300.01128 * 1 2 3 23 23 H 1.08992 * 109.47270 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46808 * 60.00573 * 1 2 3 25 25 H 1.08998 * 109.46666 * 59.99906 * 6 4 2 26 26 H 1.08997 * 109.47188 * 179.97438 * 6 4 2 27 27 H 1.08997 * 109.46992 * 300.00428 * 6 4 2 28 28 H 1.09004 * 109.58552 * 294.74612 * 9 7 4 29 29 H 1.08997 * 109.58543 * 174.33219 * 9 7 4 30 30 H 1.08991 * 109.46937 * 182.34214 * 10 9 7 31 31 H 1.08996 * 109.46678 * 62.34211 * 10 9 7 32 32 H 0.97001 * 119.99462 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0407 -0.7221 -1.2512 5 1 1.6416 -0.2367 -2.1418 6 6 3.5698 -0.6772 -1.2812 7 16 1.4831 -2.4511 -1.1983 8 8 2.1243 -3.1875 -2.2306 9 6 2.1018 -3.0083 0.4172 10 6 1.5848 -2.0547 1.4997 11 7 2.0178 -0.6898 1.1953 12 6 2.8743 -0.0616 2.0248 13 8 3.3122 1.0350 1.7307 14 6 3.2779 -0.6983 3.2795 15 1 2.9582 -1.7059 3.5011 16 6 4.0789 -0.0011 4.1926 17 7 4.4655 1.2180 3.9247 18 14 4.5933 -0.8135 5.7941 19 1 5.8781 -1.5311 5.5947 20 1 4.7634 0.2238 6.8430 21 1 3.5476 -1.7791 6.2176 22 1 -0.3634 0.5140 0.8898 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 -0.8901 25 1 3.9651 -1.1688 -0.3923 26 1 3.9311 -1.1917 -2.1715 27 1 3.9025 0.3606 -1.3006 28 1 3.1918 -3.0003 0.4135 29 1 1.7425 -4.0176 0.6177 30 1 1.9836 -2.3547 2.4686 31 1 0.4959 -2.0927 1.5273 32 1 5.0199 1.7010 4.5573 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356817669.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:35 Heat of formation + Delta-G solvation = -98.039228 kcal Electronic energy + Delta-G solvation = -16872.588845 eV Core-core repulsion = 14151.861349 eV Total energy + Delta-G solvation = -2720.727495 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.32767 -37.28183 -36.75550 -34.68285 -34.29575 -31.63283 -30.35424 -28.21164 -24.91882 -24.30140 -22.82319 -20.64310 -18.83062 -17.90932 -17.87162 -16.72619 -16.30548 -16.28788 -15.66377 -15.60834 -14.98454 -14.64843 -14.30457 -13.90726 -13.64995 -13.47526 -13.34282 -13.13471 -12.80848 -12.76453 -12.56018 -12.46674 -12.12993 -12.04163 -11.98711 -11.63898 -10.93627 -10.77005 -9.69678 -9.23359 -9.12328 -8.27877 -6.81799 0.70808 1.39131 1.39410 1.54502 1.56420 2.22572 2.47205 2.78814 2.82340 3.61263 3.71321 3.82361 4.17887 4.21733 4.22785 4.47793 4.55330 4.64234 4.68405 4.83568 4.94812 4.99478 5.14814 5.18740 5.24831 5.43709 5.56615 5.82691 6.19444 6.45132 6.90373 7.43512 8.50501 8.69638 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.034252 B = 0.008001 C = 0.007488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.284732 B = 3498.528339 C = 3738.641132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.163 3.837 3 H 0.057 0.943 4 C -0.412 4.412 5 H 0.145 0.855 6 C -0.131 4.131 7 S 1.312 4.688 8 O -0.918 6.918 9 C -0.453 4.453 10 C 0.132 3.868 11 N -0.642 5.642 12 C 0.544 3.456 13 O -0.629 6.629 14 C -0.571 4.571 15 H 0.099 0.901 16 C 0.029 3.971 17 N -0.824 5.824 18 Si 0.988 3.012 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.241 1.241 22 H 0.056 0.944 23 H 0.097 0.903 24 H 0.095 0.905 25 H 0.030 0.970 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.055 0.945 29 H 0.151 0.849 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.206 -7.871 -4.113 15.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.058 3.942 3 H 0.075 0.925 4 C -0.530 4.530 5 H 0.163 0.837 6 C -0.189 4.189 7 S 1.511 4.489 8 O -0.914 6.914 9 C -0.593 4.593 10 C 0.008 3.992 11 N -0.377 5.377 12 C 0.350 3.650 13 O -0.515 6.515 14 C -0.607 4.607 15 H 0.116 0.884 16 C -0.186 4.186 17 N -0.454 5.454 18 Si 0.808 3.192 19 H -0.196 1.196 20 H -0.201 1.201 21 H -0.163 1.163 22 H 0.075 0.925 23 H 0.116 0.884 24 H 0.113 0.887 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.169 0.831 30 H 0.109 0.891 31 H 0.135 0.865 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.398 -7.651 -4.953 15.388 hybrid contribution 3.389 0.390 0.758 3.494 sum -9.009 -7.261 -4.195 12.308 Atomic orbital electron populations 1.22235 0.91016 1.04814 1.03754 1.20471 0.96090 0.95825 0.81846 0.92506 1.27887 1.00365 1.19587 1.05198 0.83690 1.21550 0.95783 1.01706 0.99830 1.69329 1.15133 0.82590 0.81861 1.92925 1.79857 1.67032 1.51551 1.28039 1.06982 1.08628 1.15622 1.21310 1.01257 0.79189 0.97447 1.48007 1.49233 1.15659 1.24847 1.18571 0.77574 0.84476 0.84366 1.90552 1.59233 1.24603 1.77145 1.21605 1.33856 1.02695 1.02576 0.88364 1.26942 0.93732 0.94667 1.03266 1.70194 1.27464 1.11889 1.35808 0.85147 0.79423 0.78637 0.75946 1.19613 1.20061 1.16344 0.92512 0.88409 0.88671 0.95073 0.93063 0.93743 0.92604 0.83088 0.89092 0.86459 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 8.78 71.98 0.63 -2.77 16 2 C 0.16 5.53 2.55 45.09 0.12 5.65 16 3 H 0.06 2.45 6.91 -2.38 -0.02 2.44 16 4 C -0.41 -12.56 2.93 30.67 0.09 -12.47 16 5 H 0.15 3.51 8.14 -2.39 -0.02 3.49 16 6 C -0.13 -5.19 8.89 71.98 0.64 -4.55 16 7 S 1.31 32.92 11.82 -56.49 -0.67 32.26 16 8 O -0.92 -34.02 17.93 -148.98 -2.67 -36.69 16 9 C -0.45 -12.36 6.25 72.06 0.45 -11.91 16 10 C 0.13 3.91 5.72 86.48 0.49 4.40 16 11 N -0.64 -25.80 1.92 -802.59 -1.54 -27.34 16 12 C 0.54 29.89 7.49 86.36 0.65 30.54 16 13 O -0.63 -40.84 14.36 -4.30 -0.06 -40.90 16 14 C -0.57 -30.80 8.84 24.83 0.22 -30.58 16 15 H 0.10 4.64 5.56 -2.91 -0.02 4.62 16 16 C 0.03 1.57 5.50 85.31 0.47 2.04 16 17 N -0.82 -49.98 11.84 21.84 0.26 -49.72 16 18 Si 0.99 40.17 29.56 68.60 2.03 42.20 16 19 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 20 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 21 H -0.24 -8.79 7.11 99.48 0.71 -8.09 16 22 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.10 1.29 5.84 -2.39 -0.01 1.28 16 24 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.03 1.40 6.45 -2.39 -0.02 1.38 16 26 H 0.05 1.94 8.06 -2.39 -0.02 1.92 16 27 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.05 1.97 7.33 -2.39 -0.02 1.95 16 29 H 0.15 2.94 8.14 -2.39 -0.02 2.92 16 30 H 0.09 3.00 5.13 -2.39 -0.01 2.99 16 31 H 0.12 2.26 6.92 -2.39 -0.02 2.24 16 32 H 0.27 15.06 8.29 -92.71 -0.77 14.29 16 Total: -1.00 -86.33 266.89 2.23 -84.10 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 1.13 Total: 15.74 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: 3.76 Total: -19.65 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -1.28 Total: -77.06 kcal Atomic # 8 Polarization: -74.86 SS G_CDS: -2.73 Total: -77.59 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Atomic # 16 Polarization: 32.92 SS G_CDS: -0.67 Total: 32.26 kcal Total: -86.33 2.23 -84.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356817669.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.941 kcal (2) G-P(sol) polarization free energy of solvation -86.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds